Wall clock time and date at job start Tue Mar 31 2020 11:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38715 * 119.98115 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.01893 * 179.97438 * 4 3 2 6 6 C 1.38888 * 119.97716 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.01672 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47378 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99761 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.37091 * 119.99864 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99960 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00136 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00461 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99761 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46925 * 90.00136 * 16 14 12 18 18 H 1.48499 * 109.47025 * 210.00466 * 16 14 12 19 19 H 1.48505 * 109.47220 * 330.00334 * 16 14 12 20 20 C 1.38841 * 119.96195 * 359.97438 * 6 5 4 21 21 C 1.50696 * 120.00453 * 180.02562 * 20 6 5 22 22 F 1.39902 * 109.46745 * 179.97438 * 21 20 6 23 23 F 1.39893 * 109.47700 * 299.99821 * 21 20 6 24 24 F 1.39900 * 109.47221 * 60.00549 * 21 20 6 25 25 C 1.38127 * 119.97967 * 359.74390 * 20 6 5 26 26 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47352 * 299.99796 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 29 29 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 30 30 H 1.07992 * 120.01142 * 180.02562 * 5 4 3 31 31 H 0.96997 * 120.00158 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.46962 * 299.99935 * 8 7 6 33 33 H 1.09001 * 109.47172 * 59.99620 * 8 7 6 34 34 H 0.97001 * 119.99768 * 359.97438 * 11 9 8 35 35 H 0.96996 * 120.00219 * 179.97438 * 15 14 12 36 36 H 1.08003 * 119.99012 * 180.25576 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9165 3.6058 0.0011 6 6 3.3035 3.6789 0.0005 7 7 3.9387 4.9258 0.0016 8 6 3.1408 6.1545 0.0039 9 6 4.0587 7.3496 0.0053 10 8 5.2612 7.1907 0.0050 11 7 3.5435 8.5951 0.0069 12 6 4.3786 9.6823 0.0077 13 1 5.4493 9.5408 0.0074 14 6 3.8476 10.9663 0.0099 15 7 4.6480 12.0084 0.0112 16 14 1.9956 11.2110 0.0112 17 1 1.5056 11.2737 1.4116 18 1 1.6634 12.4789 -0.6869 19 1 1.3457 10.0748 -0.6903 20 6 4.0592 2.5143 0.0000 21 6 5.5642 2.5925 0.0000 22 9 6.0983 1.2994 0.0000 23 9 5.9957 3.2757 -1.1419 24 9 5.9957 3.2747 1.1426 25 6 3.4313 1.2840 0.0053 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2120 2.3179 0.0005 30 1 1.3279 4.5112 0.0019 31 1 4.9073 4.9766 0.0016 32 1 2.5112 6.1805 -0.8856 33 1 2.5127 6.1782 0.8944 34 1 2.5819 8.7221 0.0068 35 1 4.2772 12.9047 0.0123 36 1 4.0191 0.3779 0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749879104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:10 Heat of formation + Delta-G solvation = -211.555530 kcal Electronic energy + Delta-G solvation = -26526.227602 eV Core-core repulsion = 21981.185306 eV Total energy + Delta-G solvation = -4545.042297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.24737 -48.75480 -48.70288 -41.27696 -40.45016 -38.96429 -36.34829 -35.61776 -33.84690 -32.95046 -30.94259 -28.91000 -27.53562 -26.81403 -26.04890 -23.33725 -22.54032 -21.41375 -20.52124 -19.86476 -19.59878 -19.54328 -18.51896 -17.62310 -17.34307 -17.06624 -16.73924 -16.58813 -16.39865 -16.06867 -15.62152 -15.61036 -15.22682 -15.13655 -14.97088 -14.86596 -14.80543 -14.58579 -14.53250 -14.15009 -13.97310 -13.81454 -13.50862 -13.46143 -12.97042 -12.66992 -12.44382 -12.19691 -11.98775 -11.81433 -11.57421 -10.65911 -10.62633 -10.32511 -10.29166 -8.45063 -8.29324 -6.08391 -0.06452 0.49592 1.30896 1.35970 1.46310 1.61339 1.81291 2.09673 2.22488 2.40186 2.52625 2.79930 2.90865 3.05836 3.10996 3.36925 3.74285 3.95393 4.00879 4.16659 4.30702 4.34400 4.45509 4.52144 4.53795 4.73308 4.78739 4.89835 5.06175 5.27857 5.41419 5.48654 5.85430 6.05184 6.40646 6.51563 6.53673 6.79403 7.28920 7.81862 8.72072 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003468 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.965136 B = 8072.101415 C = 9592.968479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.060 3.940 4 C -0.110 4.110 5 C -0.159 4.159 6 C 0.226 3.774 7 N -0.739 5.739 8 C 0.120 3.880 9 C 0.437 3.563 10 O -0.624 6.624 11 N -0.575 5.575 12 C -0.335 4.335 13 H 0.054 0.946 14 C -0.013 4.013 15 N -0.931 5.931 16 Si 0.967 3.033 17 H -0.255 1.255 18 H -0.276 1.276 19 H -0.223 1.223 20 C -0.244 4.244 21 C 0.509 3.491 22 F -0.175 7.175 23 F -0.186 7.186 24 F -0.186 7.186 25 C -0.068 4.068 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.171 0.829 30 H 0.165 0.835 31 H 0.398 0.602 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.395 0.605 35 H 0.281 0.719 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.501 -23.087 -0.049 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.014 3.986 4 C -0.129 4.129 5 C -0.181 4.181 6 C 0.120 3.880 7 N -0.370 5.370 8 C -0.007 4.007 9 C 0.225 3.775 10 O -0.510 6.510 11 N -0.215 5.215 12 C -0.464 4.464 13 H 0.072 0.928 14 C -0.212 4.212 15 N -0.570 5.570 16 Si 0.786 3.214 17 H -0.179 1.179 18 H -0.201 1.201 19 H -0.146 1.146 20 C -0.251 4.251 21 C 0.455 3.545 22 F -0.156 7.156 23 F -0.168 7.168 24 F -0.168 7.168 25 C -0.087 4.087 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.189 0.811 30 H 0.182 0.818 31 H 0.235 0.765 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.231 0.769 35 H 0.091 0.909 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.670 -22.956 -0.050 27.794 hybrid contribution 0.584 1.005 0.004 1.162 sum -15.086 -21.951 -0.046 26.635 Atomic orbital electron populations 1.23351 0.76412 1.05518 1.02441 1.86058 1.23338 1.25896 1.89700 1.18571 0.91231 0.85472 1.03352 1.21569 1.01821 0.90383 0.99103 1.20826 0.90322 0.99994 1.06960 1.17646 0.93132 0.83300 0.93910 1.44803 1.09358 1.02147 1.80690 1.21119 0.92653 0.81075 1.05828 1.20802 0.89355 0.85148 0.82205 1.90565 1.18124 1.85921 1.56358 1.41856 1.08595 1.04682 1.66377 1.18999 0.91334 0.85051 1.51028 0.92766 1.26202 1.05791 0.93707 0.95521 1.69803 1.38499 0.99435 1.49306 0.85348 0.75852 0.80075 0.80152 1.17923 1.20147 1.14614 1.19059 0.89262 0.94975 1.21779 1.18377 0.89474 0.73390 0.73305 1.93139 1.88277 1.37951 1.96222 1.93212 1.91673 1.80239 1.51644 1.93214 1.91676 1.80300 1.51592 1.19903 0.93055 0.96003 0.99728 0.86729 0.91445 0.91454 0.81137 0.81785 0.76460 0.86336 0.86267 0.76850 0.90936 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.68 10.50 -93.60 -0.98 -6.66 16 3 C 0.06 1.14 6.69 22.49 0.15 1.29 16 4 C -0.11 -1.63 9.03 22.35 0.20 -1.43 16 5 C -0.16 -2.86 9.31 22.39 0.21 -2.65 16 6 C 0.23 5.80 6.55 38.15 0.25 6.05 16 7 N -0.74 -22.98 5.46 -342.97 -1.87 -24.85 16 8 C 0.12 3.38 5.39 85.63 0.46 3.84 16 9 C 0.44 18.85 7.85 87.66 0.69 19.54 16 10 O -0.62 -34.03 15.24 -3.06 -0.05 -34.08 16 11 N -0.57 -25.54 5.09 -306.99 -1.56 -27.10 16 12 C -0.34 -19.06 10.16 84.04 0.85 -18.21 16 13 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 14 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 15 N -0.93 -54.96 13.96 21.66 0.30 -54.65 16 16 Si 0.97 36.41 27.74 68.60 1.90 38.31 16 17 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 18 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.22 -6.74 6.52 99.48 0.65 -6.09 16 20 C -0.24 -6.46 5.38 -19.75 -0.11 -6.57 16 21 C 0.51 15.21 2.80 71.23 0.20 15.41 16 22 F -0.17 -4.75 15.97 44.97 0.72 -4.04 16 23 F -0.19 -6.19 16.24 44.97 0.73 -5.46 16 24 F -0.19 -6.20 16.24 44.97 0.73 -5.47 16 25 C -0.07 -1.53 9.36 22.35 0.21 -1.32 16 26 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 28 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 29 H 0.17 1.27 6.29 -2.91 -0.02 1.25 16 30 H 0.16 2.03 6.73 -2.91 -0.02 2.01 16 31 H 0.40 15.04 4.86 -92.71 -0.45 14.58 16 32 H 0.12 2.50 7.95 -2.38 -0.02 2.48 16 33 H 0.12 2.50 7.95 -2.39 -0.02 2.48 16 34 H 0.39 13.87 5.76 -92.71 -0.53 13.33 16 35 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.15 3.06 7.15 -2.91 -0.02 3.04 16 Total: -1.00 -77.63 320.86 4.75 -72.88 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.13 Total: 34.15 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 4.70 Total: 16.97 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.13 Total: -106.61 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.03 Total: -40.74 kcal Atomic # 9 Polarization: -17.14 SS G_CDS: 2.18 Total: -14.97 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 1.90 Total: 38.31 kcal Total: -77.63 4.75 -72.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749879104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.676 kcal (2) G-P(sol) polarization free energy of solvation -77.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds