Wall clock time and date at job start Tue Mar 31 2020 11:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35963 * 117.00124 * 2 1 4 4 C 1.38683 * 119.93592 * 359.97438 * 3 2 1 5 5 C 1.37969 * 120.13737 * 180.02562 * 4 3 2 6 6 C 1.39514 * 120.00599 * 359.71564 * 5 4 3 7 7 C 1.47987 * 120.05897 * 180.30117 * 6 5 4 8 8 C 1.36681 * 126.58922 * 0.25750 * 7 6 5 9 9 C 1.41255 * 105.43650 * 179.97438 * 8 7 6 10 10 C 1.47570 * 126.33831 * 179.97438 * 9 8 7 11 11 O 1.21522 * 119.99915 * 359.97438 * 10 9 8 12 12 O 1.34750 * 120.00101 * 179.97438 * 10 9 8 13 13 C 1.34868 * 116.99903 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00137 * 359.97438 * 13 12 10 15 15 C 1.38793 * 119.99739 * 179.97438 * 13 12 10 16 16 N 1.31425 * 119.99653 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00125 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46847 * 90.00016 * 17 15 13 19 19 H 1.48502 * 109.47001 * 209.99818 * 17 15 13 20 20 H 1.48500 * 109.47133 * 329.99749 * 17 15 13 21 21 N 1.31907 * 107.32362 * 359.97438 * 9 8 7 22 22 N 1.28459 * 110.41840 * 359.75837 * 21 9 8 23 23 H 0.96997 * 125.00024 * 180.27547 * 22 21 9 24 24 C 1.39499 * 119.87721 * 0.56266 * 6 5 4 25 25 C 1.38301 * 119.85844 * 359.43623 * 24 6 5 26 26 O 1.36001 * 120.00158 * 180.25917 * 25 24 6 27 27 C 1.42892 * 117.00463 * 0.02562 * 26 25 24 28 28 H 1.09009 * 109.47240 * 299.99594 * 1 2 3 29 29 H 1.08995 * 109.47215 * 59.99846 * 1 2 3 30 30 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.93381 * 0.04000 * 4 3 2 32 32 H 1.07994 * 119.99545 * 180.02562 * 5 4 3 33 33 H 1.07998 * 127.27831 * 359.96709 * 8 7 6 34 34 H 0.97002 * 119.99643 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.07307 * 179.72191 * 24 6 5 36 36 H 1.09003 * 109.47376 * 300.00653 * 27 26 25 37 37 H 1.08999 * 109.47296 * 60.00027 * 27 26 25 38 38 H 1.08995 * 109.47771 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2896 2.3737 -0.0005 5 6 1.9117 3.6052 -0.0011 6 6 3.3047 3.6832 0.0049 7 6 3.9731 5.0035 0.0111 8 6 3.3619 6.2261 0.0166 9 6 4.4117 7.1712 0.0217 10 6 4.2663 8.6397 0.0281 11 8 3.1591 9.1405 0.0290 12 8 5.3611 9.4252 0.0331 13 6 5.1581 10.7585 0.0383 14 1 4.1521 11.1515 0.0380 15 6 6.2419 11.6254 0.0441 16 7 6.0440 12.9247 0.0497 17 14 7.9818 10.9456 0.0440 18 1 8.4452 10.7718 -1.3561 19 1 8.8829 11.8916 0.7499 20 1 8.0004 9.6329 0.7382 21 7 5.5462 6.4981 0.0197 22 7 5.3173 5.2341 0.0189 23 1 6.0000 4.5451 0.0213 24 6 4.0662 2.5144 -0.0004 25 6 3.4371 1.2828 0.0001 26 8 4.1767 0.1414 0.0003 27 6 5.5979 0.2893 0.0004 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2113 2.3147 -0.0003 32 1 1.3203 4.5088 -0.0011 33 1 2.3008 6.4269 0.0169 34 1 6.8015 13.5306 0.0534 35 1 5.1447 2.5712 -0.0003 36 1 5.9062 0.8380 -0.8896 37 1 5.9061 0.8380 0.8903 38 1 6.0657 -0.6952 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751764468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:29 Heat of formation + Delta-G solvation = -42.063156 kcal Electronic energy + Delta-G solvation = -25119.000138 eV Core-core repulsion = 21123.164323 eV Total energy + Delta-G solvation = -3995.835815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44025 -40.82742 -38.90595 -38.82046 -37.30440 -35.31711 -32.41800 -32.18677 -31.81650 -30.65853 -29.30720 -27.63240 -27.23227 -25.98526 -23.52865 -23.28221 -22.32959 -20.94521 -19.53707 -19.14455 -18.06959 -17.88962 -17.21250 -16.89271 -16.45835 -16.44149 -15.63073 -15.58818 -15.17539 -15.03043 -14.88455 -14.33657 -14.15753 -13.86701 -13.80552 -13.38883 -13.10399 -12.71544 -12.47991 -12.34595 -12.06619 -11.71649 -11.63312 -11.57347 -11.48938 -11.28091 -10.67230 -10.50562 -10.35510 -9.68467 -9.61367 -9.36631 -9.18740 -8.89986 -8.66034 -7.84678 -6.37461 -4.09675 0.59175 0.96989 1.95019 2.34728 2.81982 2.86253 2.88337 3.25611 3.29102 3.46294 3.47067 3.92838 3.99994 4.28831 4.30262 4.40278 4.56675 4.66613 4.74079 4.77591 4.80564 4.88372 4.89347 4.98442 5.11240 5.12345 5.15413 5.15707 5.54804 5.56276 5.75525 5.92748 6.17853 6.19214 6.24445 6.60196 6.64410 7.02412 7.17455 7.71157 7.97794 8.06993 8.61747 9.00624 9.70645 10.70067 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.002597 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.668265 B =10778.709945 C =11830.917554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.100 3.900 4 C -0.164 4.164 5 C -0.090 4.090 6 C -0.007 4.007 7 C 0.043 3.957 8 C -0.154 4.154 9 C 0.037 3.963 10 C 0.487 3.513 11 O -0.529 6.529 12 O -0.232 6.232 13 C -0.376 4.376 14 H 0.113 0.887 15 C 0.068 3.932 16 N -0.869 5.869 17 Si 0.903 3.097 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.255 1.255 21 N -0.233 5.233 22 N -0.386 5.386 23 H 0.441 0.559 24 C -0.171 4.171 25 C 0.106 3.894 26 O -0.305 6.305 27 C 0.024 3.976 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.280 0.720 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.617 -29.062 -0.087 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.054 3.946 4 C -0.183 4.183 5 C -0.109 4.109 6 C -0.009 4.009 7 C -0.081 4.081 8 C -0.181 4.181 9 C -0.121 4.121 10 C 0.332 3.668 11 O -0.423 6.423 12 O -0.138 6.138 13 C -0.452 4.452 14 H 0.130 0.870 15 C -0.137 4.137 16 N -0.507 5.507 17 Si 0.728 3.272 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.179 1.179 21 N -0.069 5.069 22 N -0.102 5.102 23 H 0.285 0.715 24 C -0.191 4.191 25 C 0.061 3.939 26 O -0.219 6.219 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.634 -28.866 -0.078 29.236 hybrid contribution 0.352 -0.229 -0.024 0.420 sum -4.283 -29.095 -0.101 29.408 Atomic orbital electron populations 1.23104 0.78358 1.04099 1.01470 1.86160 1.21184 1.25818 1.88836 1.18323 0.89039 0.85368 1.01831 1.21020 1.00265 0.90969 1.06062 1.20905 0.92756 0.97852 0.99402 1.17537 0.92770 0.88486 1.02103 1.19698 0.84310 0.93977 1.10119 1.21654 1.00516 0.88805 1.07161 1.21096 0.89396 0.93028 1.08576 1.18969 0.83497 0.84296 0.80019 1.90699 1.26702 1.74284 1.50574 1.83618 1.34182 1.20074 1.75926 1.20739 0.97431 0.75755 1.51261 0.86991 1.24551 0.99573 0.94220 0.95349 1.69602 1.32882 1.01420 1.46845 0.86223 0.82043 0.79802 0.79102 1.19803 1.20786 1.17868 1.73809 1.25987 0.89525 1.17590 1.43580 1.06140 1.05827 1.54624 0.71480 1.20902 0.99822 0.90584 1.07807 1.17981 0.88306 0.85701 1.01924 1.86183 1.18769 1.27909 1.89020 1.23108 0.78567 1.04135 1.01335 0.92491 0.92498 0.88163 0.84051 0.84276 0.81558 0.90924 0.85095 0.92599 0.92595 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.02 10.27 -34.30 -0.35 -3.37 16 3 C 0.10 1.02 6.70 -39.03 -0.26 0.76 16 4 C -0.16 -1.43 9.02 -39.52 -0.36 -1.79 16 5 C -0.09 -0.87 9.57 -39.20 -0.38 -1.25 16 6 C -0.01 -0.07 5.87 -104.96 -0.62 -0.69 16 7 C 0.04 0.57 6.98 -82.41 -0.58 -0.01 16 8 C -0.15 -2.51 10.15 -39.00 -0.40 -2.90 16 9 C 0.04 0.77 7.14 -82.88 -0.59 0.18 16 10 C 0.49 12.45 7.91 34.54 0.27 12.72 16 11 O -0.53 -14.52 16.16 -19.28 -0.31 -14.83 16 12 O -0.23 -6.50 8.58 -21.73 -0.19 -6.68 16 13 C -0.38 -11.44 10.11 30.94 0.31 -11.13 16 14 H 0.11 3.69 7.09 -52.49 -0.37 3.31 16 15 C 0.07 1.98 5.49 -17.52 -0.10 1.88 16 16 N -0.87 -25.90 13.96 55.49 0.77 -25.13 16 17 Si 0.90 22.11 28.62 -169.99 -4.86 17.24 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.25 -6.25 7.11 56.52 0.40 -5.85 16 21 N -0.23 -4.32 12.22 33.35 0.41 -3.92 16 22 N -0.39 -5.20 6.80 33.31 0.23 -4.98 16 23 H 0.44 4.02 8.07 -190.45 -1.54 2.48 16 24 C -0.17 -1.64 8.69 -39.09 -0.34 -1.98 16 25 C 0.11 1.11 6.69 -39.18 -0.26 0.85 16 26 O -0.31 -3.09 10.27 -34.42 -0.35 -3.44 16 27 C 0.02 0.14 9.81 101.05 0.99 1.13 16 28 H 0.06 0.25 7.66 -51.92 -0.40 -0.15 16 29 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 0.85 6.28 -52.49 -0.33 0.52 16 32 H 0.14 1.19 7.08 -52.49 -0.37 0.82 16 33 H 0.17 2.39 7.38 -52.49 -0.39 2.01 16 34 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.13 0.93 5.42 -52.49 -0.28 0.64 16 36 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 37 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -37.03 338.69 -5.71 -42.74 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.85 Total: -1.65 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.30 Total: -1.09 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 1.41 Total: -34.02 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.20 Total: -28.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.03 -5.71 -42.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751764468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.680 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds