Wall clock time and date at job start Tue Mar 31 2020 11:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35963 * 117.00124 * 2 1 4 4 C 1.38683 * 119.93592 * 359.97438 * 3 2 1 5 5 C 1.37969 * 120.13737 * 180.02562 * 4 3 2 6 6 C 1.39514 * 120.00599 * 359.71564 * 5 4 3 7 7 C 1.47987 * 120.05897 * 180.30117 * 6 5 4 8 8 C 1.36681 * 126.58922 * 0.25750 * 7 6 5 9 9 C 1.41255 * 105.43650 * 179.97438 * 8 7 6 10 10 C 1.47570 * 126.33831 * 179.97438 * 9 8 7 11 11 O 1.21522 * 119.99915 * 359.97438 * 10 9 8 12 12 O 1.34750 * 120.00101 * 179.97438 * 10 9 8 13 13 C 1.34868 * 116.99903 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00137 * 359.97438 * 13 12 10 15 15 C 1.38793 * 119.99739 * 179.97438 * 13 12 10 16 16 N 1.31425 * 119.99653 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00125 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46847 * 90.00016 * 17 15 13 19 19 H 1.48502 * 109.47001 * 209.99818 * 17 15 13 20 20 H 1.48500 * 109.47133 * 329.99749 * 17 15 13 21 21 N 1.31907 * 107.32362 * 359.97438 * 9 8 7 22 22 N 1.28459 * 110.41840 * 359.75837 * 21 9 8 23 23 H 0.96997 * 125.00024 * 180.27547 * 22 21 9 24 24 C 1.39499 * 119.87721 * 0.56266 * 6 5 4 25 25 C 1.38301 * 119.85844 * 359.43623 * 24 6 5 26 26 O 1.36001 * 120.00158 * 180.25917 * 25 24 6 27 27 C 1.42892 * 117.00463 * 0.02562 * 26 25 24 28 28 H 1.09009 * 109.47240 * 299.99594 * 1 2 3 29 29 H 1.08995 * 109.47215 * 59.99846 * 1 2 3 30 30 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.93381 * 0.04000 * 4 3 2 32 32 H 1.07994 * 119.99545 * 180.02562 * 5 4 3 33 33 H 1.07998 * 127.27831 * 359.96709 * 8 7 6 34 34 H 0.97002 * 119.99643 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.07307 * 179.72191 * 24 6 5 36 36 H 1.09003 * 109.47376 * 300.00653 * 27 26 25 37 37 H 1.08999 * 109.47296 * 60.00027 * 27 26 25 38 38 H 1.08995 * 109.47771 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2896 2.3737 -0.0005 5 6 1.9117 3.6052 -0.0011 6 6 3.3047 3.6832 0.0049 7 6 3.9731 5.0035 0.0111 8 6 3.3619 6.2261 0.0166 9 6 4.4117 7.1712 0.0217 10 6 4.2663 8.6397 0.0281 11 8 3.1591 9.1405 0.0290 12 8 5.3611 9.4252 0.0331 13 6 5.1581 10.7585 0.0383 14 1 4.1521 11.1515 0.0380 15 6 6.2419 11.6254 0.0441 16 7 6.0440 12.9247 0.0497 17 14 7.9818 10.9456 0.0440 18 1 8.4452 10.7718 -1.3561 19 1 8.8829 11.8916 0.7499 20 1 8.0004 9.6329 0.7382 21 7 5.5462 6.4981 0.0197 22 7 5.3173 5.2341 0.0189 23 1 6.0000 4.5451 0.0213 24 6 4.0662 2.5144 -0.0004 25 6 3.4371 1.2828 0.0001 26 8 4.1767 0.1414 0.0003 27 6 5.5979 0.2893 0.0004 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2113 2.3147 -0.0003 32 1 1.3203 4.5088 -0.0011 33 1 2.3008 6.4269 0.0169 34 1 6.8015 13.5306 0.0534 35 1 5.1447 2.5712 -0.0003 36 1 5.9062 0.8380 -0.8896 37 1 5.9061 0.8380 0.8903 38 1 6.0657 -0.6952 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751764468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:29 Heat of formation + Delta-G solvation = -68.235654 kcal Electronic energy + Delta-G solvation = -25120.135063 eV Core-core repulsion = 21123.164323 eV Total energy + Delta-G solvation = -3996.970740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.73978 -41.52804 -40.97929 -39.45426 -38.04225 -37.44971 -34.55222 -33.36814 -33.05939 -31.39595 -30.17765 -28.10512 -28.05880 -27.90162 -25.23555 -24.19277 -23.13734 -22.02949 -21.22385 -20.20795 -19.99090 -18.85760 -18.65790 -17.80895 -17.44243 -17.19950 -17.03028 -16.97259 -16.16934 -16.13333 -15.92844 -15.80411 -15.45660 -15.23543 -14.89792 -14.51617 -14.17695 -14.06625 -13.72997 -13.35737 -13.34680 -13.01276 -12.47125 -12.36678 -12.34888 -12.29373 -12.08925 -12.07866 -12.01674 -11.86041 -11.45610 -10.86510 -10.65431 -10.49675 -9.69557 -8.68360 -8.58355 -6.42817 -0.26999 0.25998 0.35352 1.25320 1.31229 1.37893 1.53973 1.66232 2.13272 2.24580 2.28731 2.31028 2.35350 2.69682 2.92261 3.35241 3.38386 3.71117 3.94122 3.99174 4.18401 4.27005 4.33703 4.39559 4.42509 4.45786 4.47822 4.54919 4.62881 4.74470 4.79796 4.93192 5.15263 5.18493 5.36214 5.43390 5.50321 5.82977 5.95810 6.05782 6.39301 6.54242 6.70512 6.77896 7.53436 8.53840 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.002597 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.668265 B =10778.709945 C =11830.917554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.095 3.905 4 C -0.162 4.162 5 C -0.089 4.089 6 C -0.029 4.029 7 C 0.079 3.921 8 C -0.166 4.166 9 C -0.001 4.001 10 C 0.492 3.508 11 O -0.558 6.558 12 O -0.242 6.242 13 C -0.408 4.408 14 H 0.066 0.934 15 C 0.022 3.978 16 N -0.907 5.907 17 Si 0.978 3.022 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.257 1.257 21 N -0.248 5.248 22 N -0.357 5.357 23 H 0.462 0.538 24 C -0.161 4.161 25 C 0.089 3.911 26 O -0.326 6.326 27 C 0.013 3.987 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.179 0.821 34 H 0.292 0.708 35 H 0.154 0.846 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -32.421 -0.114 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.049 3.951 4 C -0.180 4.180 5 C -0.108 4.108 6 C -0.031 4.031 7 C -0.046 4.046 8 C -0.192 4.192 9 C -0.157 4.157 10 C 0.339 3.661 11 O -0.452 6.452 12 O -0.150 6.150 13 C -0.484 4.484 14 H 0.084 0.916 15 C -0.179 4.179 16 N -0.547 5.547 17 Si 0.798 3.202 18 H -0.184 1.184 19 H -0.184 1.184 20 H -0.181 1.181 21 N -0.087 5.087 22 N -0.077 5.077 23 H 0.311 0.689 24 C -0.181 4.181 25 C 0.044 3.956 26 O -0.240 6.240 27 C -0.081 4.081 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.185 0.815 32 H 0.167 0.833 33 H 0.196 0.804 34 H 0.102 0.898 35 H 0.172 0.828 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.661 -32.224 -0.106 32.431 hybrid contribution -0.148 0.483 -0.018 0.505 sum -3.809 -31.741 -0.124 31.969 Atomic orbital electron populations 1.23407 0.76279 1.05679 1.02595 1.86142 1.23448 1.25911 1.88609 1.18664 0.89469 0.85992 1.00962 1.21256 1.01557 0.89997 1.05237 1.21128 0.92526 0.98763 0.98377 1.17478 0.93306 0.87372 1.04982 1.19840 0.83715 0.94187 1.06845 1.21807 1.00634 0.88746 1.08063 1.20574 0.91771 0.90494 1.12837 1.19910 0.82632 0.86292 0.77315 1.90661 1.27635 1.75607 1.51268 1.83628 1.35073 1.18915 1.77365 1.20445 0.96156 0.77368 1.54416 0.91611 1.25490 1.04077 0.94311 0.94009 1.69677 1.34931 1.02749 1.47295 0.85150 0.76014 0.79160 0.79896 1.18422 1.18352 1.18051 1.73680 1.25526 0.91374 1.18109 1.43612 1.07149 1.04833 1.52072 0.68870 1.21059 1.00942 0.89754 1.06304 1.18203 0.88794 0.86106 1.02505 1.86164 1.20656 1.28083 1.89077 1.23399 0.76729 1.05665 1.02336 0.91316 0.91319 0.86558 0.81472 0.83308 0.80369 0.89828 0.82838 0.91533 0.91530 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.76 10.27 -79.10 -0.81 -6.57 16 3 C 0.10 1.72 6.70 22.62 0.15 1.87 16 4 C -0.16 -2.36 9.02 22.31 0.20 -2.16 16 5 C -0.09 -1.49 9.57 22.51 0.22 -1.28 16 6 C -0.03 -0.56 5.87 -20.08 -0.12 -0.67 16 7 C 0.08 1.93 6.98 40.66 0.28 2.21 16 8 C -0.17 -5.23 10.15 22.65 0.23 -5.00 16 9 C 0.00 -0.02 7.14 42.34 0.30 0.28 16 10 C 0.49 26.14 7.91 70.28 0.56 26.69 16 11 O -0.56 -32.23 16.16 19.77 0.32 -31.91 16 12 O -0.24 -14.09 8.58 11.02 0.09 -14.00 16 13 C -0.41 -26.12 10.11 67.95 0.69 -25.43 16 14 H 0.07 4.68 7.09 -2.91 -0.02 4.66 16 15 C 0.02 1.33 5.49 84.89 0.47 1.80 16 16 N -0.91 -55.55 13.96 21.63 0.30 -55.25 16 17 Si 0.98 45.73 28.62 68.60 1.96 47.69 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 N -0.25 -8.92 12.22 -48.39 -0.59 -9.52 16 22 N -0.36 -8.71 6.80 -48.52 -0.33 -9.04 16 23 H 0.46 6.78 8.07 -220.00 -1.78 5.01 16 24 C -0.16 -2.59 8.69 22.59 0.20 -2.40 16 25 C 0.09 1.65 6.69 22.53 0.15 1.80 16 26 O -0.33 -5.89 10.27 -79.53 -0.82 -6.71 16 27 C 0.01 0.12 9.81 113.37 1.11 1.23 16 28 H 0.07 0.41 7.66 -2.38 -0.02 0.39 16 29 H 0.07 0.41 7.65 -2.39 -0.02 0.39 16 30 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.17 1.45 6.28 -2.91 -0.02 1.43 16 32 H 0.15 2.17 7.08 -2.91 -0.02 2.15 16 33 H 0.18 5.01 7.38 -2.91 -0.02 4.99 16 34 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.15 1.59 5.42 -2.91 -0.02 1.57 16 36 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 37 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -84.66 338.69 5.04 -79.62 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -0.63 Total: 5.48 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 5.55 Total: 0.19 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -0.62 Total: -73.80 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -1.22 Total: -59.18 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.96 Total: 47.69 kcal Total: -84.66 5.04 -79.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751764468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.381 kcal (2) G-P(sol) polarization free energy of solvation -84.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds