Wall clock time and date at job start Tue Mar 31 2020 11:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48506 * 109.46949 * 239.99447 * 3 2 1 5 5 H 1.48496 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47113 * 120.00049 * 3 2 1 7 7 C 1.40243 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00461 * 196.61544 * 7 2 1 9 9 C 1.41073 * 119.99746 * 16.60706 * 7 2 1 10 10 C 1.40915 * 120.09877 * 25.64991 * 9 7 2 11 11 C 1.36288 * 119.89602 * 180.27247 * 10 9 7 12 12 C 1.40085 * 120.10390 * 359.45792 * 11 10 9 13 13 C 1.47471 * 119.90219 * 180.29667 * 12 11 10 14 14 O 1.21527 * 120.00213 * 0.02562 * 13 12 11 15 15 O 1.34782 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.35797 * 117.00112 * 175.19813 * 15 13 12 17 17 C 1.37680 * 120.28508 * 265.12995 * 16 15 13 18 18 C 1.39200 * 120.77419 * 179.97438 * 17 16 15 19 19 C 1.36160 * 121.05995 * 0.02562 * 18 17 16 20 20 C 1.40497 * 119.92222 * 359.97438 * 19 18 17 21 21 C 1.40582 * 121.20148 * 179.97438 * 20 19 18 22 22 C 1.36092 * 119.66414 * 180.02562 * 21 20 19 23 23 C 1.39357 * 120.98119 * 0.02562 * 22 21 20 24 24 C 1.36147 * 120.96425 * 359.97438 * 23 22 21 25 25 C 1.40403 * 119.66942 * 359.75282 * 24 23 22 26 26 C 1.40088 * 120.19322 * 0.27984 * 12 11 10 27 27 C 1.36283 * 120.10188 * 359.97438 * 26 12 11 28 28 H 0.97001 * 120.00180 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.04820 * 0.03465 * 10 9 7 30 30 H 1.08001 * 119.94521 * 179.73887 * 11 10 9 31 31 H 1.07995 * 119.61664 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.46826 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.03478 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.16069 * 0.02562 * 21 20 19 35 35 H 1.08004 * 119.51152 * 179.97438 * 22 21 20 36 36 H 1.07995 * 119.51949 * 179.97438 * 23 22 21 37 37 H 1.07995 * 120.16587 * 180.02562 * 24 23 22 38 38 H 1.07999 * 119.94615 * 180.02562 * 26 12 11 39 39 H 1.08004 * 120.05146 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0537 -1.2339 0.2680 9 6 1.3464 -2.4109 -0.3481 10 6 0.2139 -2.3742 -1.1858 11 6 -0.4250 -3.5320 -1.5155 12 6 0.0492 -4.7583 -1.0322 13 6 -0.6418 -6.0090 -1.3971 14 8 -1.6207 -5.9749 -2.1164 15 8 -0.1875 -7.1900 -0.9328 16 6 -0.9261 -8.2919 -1.2233 17 6 -1.8584 -8.7596 -0.3245 18 6 -2.6214 -9.8878 -0.6120 19 6 -2.4676 -10.5593 -1.7865 20 6 -1.5268 -10.1142 -2.7303 21 6 -1.3455 -10.7873 -3.9511 22 6 -0.4248 -10.3292 -4.8425 23 6 0.3438 -9.2006 -4.5639 24 6 0.1952 -8.5238 -3.3919 25 6 -0.7489 -8.9635 -2.4503 26 6 1.1779 -4.8001 -0.2037 27 6 1.8201 -3.6468 0.1354 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1495 -1.4296 -1.5628 30 1 -1.2956 -3.5043 -2.1540 31 1 -1.9994 -8.2451 0.6145 32 1 -3.3464 -10.2365 0.1084 33 1 -3.0682 -11.4331 -1.9922 34 1 -1.9339 -11.6635 -4.1803 35 1 -0.2873 -10.8484 -5.7795 36 1 1.0679 -8.8579 -5.2881 37 1 0.7974 -7.6505 -3.1895 38 1 1.5403 -5.7478 0.1663 39 1 2.6905 -3.6800 0.7739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758145382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:58 Heat of formation + Delta-G solvation = -21.021053 kcal Electronic energy + Delta-G solvation = -24524.009703 eV Core-core repulsion = 20939.935605 eV Total energy + Delta-G solvation = -3584.074098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02213 -39.40979 -37.66015 -36.50133 -35.78600 -34.02828 -32.07106 -30.37664 -30.32443 -29.69462 -28.81466 -26.30569 -23.81618 -23.05241 -22.89622 -21.61142 -20.94503 -19.97532 -17.85413 -17.62770 -17.48374 -16.88819 -16.61052 -15.83061 -15.48100 -15.09196 -14.31890 -14.14420 -14.05871 -13.76795 -13.51783 -13.43883 -13.20379 -12.84076 -12.74977 -12.29918 -12.14911 -11.96090 -11.59639 -11.40924 -11.31973 -11.30133 -11.07506 -11.00810 -10.75308 -10.38734 -10.21900 -9.94266 -9.62386 -9.52905 -9.45960 -8.64340 -7.82568 -7.77204 -7.71314 -7.14649 -4.74775 0.45448 0.99733 1.93843 1.96070 2.83549 2.89097 2.90173 2.91762 2.96714 3.46877 3.53825 3.66308 4.16505 4.39891 4.63490 4.80538 4.83185 4.98589 5.09009 5.24373 5.36746 5.38626 5.44517 5.53778 5.86866 5.91237 6.05808 6.10234 6.17876 6.20432 6.24630 6.36239 6.50278 6.59714 6.68404 6.69264 6.76100 6.91526 6.95977 6.99711 7.18281 7.34313 7.53507 7.72170 7.79424 7.94075 8.29151 8.49478 8.61552 8.68283 9.76448 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027622 B = 0.002704 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.459781 B =10350.790103 C =10752.560214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.088 0.912 9 C 0.132 3.868 10 C -0.182 4.182 11 C -0.031 4.031 12 C -0.275 4.275 13 C 0.511 3.489 14 O -0.530 6.530 15 O -0.301 6.301 16 C 0.119 3.881 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.116 4.116 20 C -0.041 4.041 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.088 4.088 25 C -0.057 4.057 26 C -0.028 4.028 27 C -0.238 4.238 28 H 0.290 0.710 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 -13.861 -3.595 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.106 0.894 9 C 0.129 3.871 10 C -0.202 4.202 11 C -0.050 4.050 12 C -0.277 4.277 13 C 0.364 3.636 14 O -0.420 6.420 15 O -0.218 6.218 16 C 0.077 3.923 17 C -0.147 4.147 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.041 4.041 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.140 4.140 24 C -0.106 4.106 25 C -0.058 4.058 26 C -0.047 4.047 27 C -0.257 4.257 28 H 0.102 0.898 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.121 0.879 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.820 -13.681 -3.803 14.316 hybrid contribution 0.187 0.744 0.085 0.772 sum -1.633 -12.937 -3.717 13.559 Atomic orbital electron populations 1.69722 1.08008 1.30602 1.30155 1.26181 0.94891 1.02157 0.91891 0.86193 0.80180 0.79112 0.80458 1.18323 1.19896 1.18515 1.19922 0.98069 0.91020 1.36838 0.89393 1.17860 0.90333 0.92250 0.86689 1.20981 0.99903 0.96801 1.02465 1.20451 0.97147 0.91097 0.96281 1.18132 1.04645 0.88171 1.16755 1.22004 0.82322 0.82367 0.76898 1.90755 1.27608 1.86501 1.37175 1.84669 1.50477 1.14391 1.72227 1.18551 0.93156 0.87652 0.92985 1.21229 0.94610 0.98292 1.00525 1.20652 0.98948 0.94872 0.97282 1.20982 0.98239 1.00313 0.93843 1.17941 0.96383 0.94564 0.95209 1.20960 0.99058 0.99948 0.93118 1.20852 0.96153 0.96622 0.99370 1.20842 1.00099 0.95933 0.97092 1.21014 0.96804 0.99332 0.93417 1.18224 0.97610 0.96008 0.93939 1.20556 0.92982 0.97337 0.93782 1.20726 1.04447 0.92643 1.07879 0.89808 0.85846 0.87984 0.85100 0.85343 0.85356 0.85487 0.85960 0.85807 0.85488 0.87890 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.98 10.94 55.56 0.61 -17.37 16 2 C 0.07 1.62 5.15 -17.31 -0.09 1.53 16 3 Si 0.92 16.72 29.59 -169.99 -5.03 11.69 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.43 -10.35 9.05 -37.75 -0.34 -10.69 16 8 H 0.09 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.13 3.28 5.57 -106.80 -0.59 2.68 16 10 C -0.18 -4.53 8.62 -39.27 -0.34 -4.87 16 11 C -0.03 -0.74 9.52 -39.59 -0.38 -1.12 16 12 C -0.27 -6.39 5.89 -104.75 -0.62 -7.01 16 13 C 0.51 11.42 7.45 34.49 0.26 11.68 16 14 O -0.53 -12.84 16.09 -19.29 -0.31 -13.15 16 15 O -0.30 -6.02 8.55 -24.59 -0.21 -6.23 16 16 C 0.12 2.14 4.96 -38.74 -0.19 1.95 16 17 C -0.13 -1.98 9.94 -39.43 -0.39 -2.37 16 18 C -0.10 -1.24 9.94 -39.97 -0.40 -1.63 16 19 C -0.12 -1.40 9.75 -39.48 -0.39 -1.78 16 20 C -0.04 -0.58 5.74 -106.84 -0.61 -1.19 16 21 C -0.11 -1.32 9.77 -39.47 -0.39 -1.70 16 22 C -0.11 -1.27 9.95 -39.94 -0.40 -1.67 16 23 C -0.12 -1.59 9.95 -39.92 -0.40 -1.99 16 24 C -0.09 -1.41 9.43 -39.52 -0.37 -1.79 16 25 C -0.06 -0.97 5.74 -106.72 -0.61 -1.58 16 26 C -0.03 -0.62 9.55 -39.59 -0.38 -0.99 16 27 C -0.24 -5.45 9.73 -39.27 -0.38 -5.83 16 28 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 29 H 0.12 3.11 6.18 -52.49 -0.32 2.78 16 30 H 0.10 2.39 7.63 -52.49 -0.40 1.99 16 31 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 2.15 7.41 -52.49 -0.39 1.76 16 38 H 0.10 2.03 7.59 -52.49 -0.40 1.63 16 39 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -28.27 343.60 -10.79 -39.07 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.02 Total: 9.20 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -7.01 Total: -28.38 kcal Atomic # 7 Polarization: -17.98 SS G_CDS: 0.61 Total: -17.37 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.52 Total: -19.38 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.27 -10.79 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758145382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.044 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds