Wall clock time and date at job start Tue Mar 31 2020 11:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48506 * 109.46949 * 239.99447 * 3 2 1 5 5 H 1.48496 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47113 * 120.00049 * 3 2 1 7 7 C 1.40243 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00461 * 196.61544 * 7 2 1 9 9 C 1.41073 * 119.99746 * 16.60706 * 7 2 1 10 10 C 1.40915 * 120.09877 * 25.64991 * 9 7 2 11 11 C 1.36288 * 119.89602 * 180.27247 * 10 9 7 12 12 C 1.40085 * 120.10390 * 359.45792 * 11 10 9 13 13 C 1.47471 * 119.90219 * 180.29667 * 12 11 10 14 14 O 1.21527 * 120.00213 * 0.02562 * 13 12 11 15 15 O 1.34782 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.35797 * 117.00112 * 175.19813 * 15 13 12 17 17 C 1.37680 * 120.28508 * 265.12995 * 16 15 13 18 18 C 1.39200 * 120.77419 * 179.97438 * 17 16 15 19 19 C 1.36160 * 121.05995 * 0.02562 * 18 17 16 20 20 C 1.40497 * 119.92222 * 359.97438 * 19 18 17 21 21 C 1.40582 * 121.20148 * 179.97438 * 20 19 18 22 22 C 1.36092 * 119.66414 * 180.02562 * 21 20 19 23 23 C 1.39357 * 120.98119 * 0.02562 * 22 21 20 24 24 C 1.36147 * 120.96425 * 359.97438 * 23 22 21 25 25 C 1.40403 * 119.66942 * 359.75282 * 24 23 22 26 26 C 1.40088 * 120.19322 * 0.27984 * 12 11 10 27 27 C 1.36283 * 120.10188 * 359.97438 * 26 12 11 28 28 H 0.97001 * 120.00180 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.04820 * 0.03465 * 10 9 7 30 30 H 1.08001 * 119.94521 * 179.73887 * 11 10 9 31 31 H 1.07995 * 119.61664 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.46826 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.03478 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.16069 * 0.02562 * 21 20 19 35 35 H 1.08004 * 119.51152 * 179.97438 * 22 21 20 36 36 H 1.07995 * 119.51949 * 179.97438 * 23 22 21 37 37 H 1.07995 * 120.16587 * 180.02562 * 24 23 22 38 38 H 1.07999 * 119.94615 * 180.02562 * 26 12 11 39 39 H 1.08004 * 120.05146 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0537 -1.2339 0.2680 9 6 1.3464 -2.4109 -0.3481 10 6 0.2139 -2.3742 -1.1858 11 6 -0.4250 -3.5320 -1.5155 12 6 0.0492 -4.7583 -1.0322 13 6 -0.6418 -6.0090 -1.3971 14 8 -1.6207 -5.9749 -2.1164 15 8 -0.1875 -7.1900 -0.9328 16 6 -0.9261 -8.2919 -1.2233 17 6 -1.8584 -8.7596 -0.3245 18 6 -2.6214 -9.8878 -0.6120 19 6 -2.4676 -10.5593 -1.7865 20 6 -1.5268 -10.1142 -2.7303 21 6 -1.3455 -10.7873 -3.9511 22 6 -0.4248 -10.3292 -4.8425 23 6 0.3438 -9.2006 -4.5639 24 6 0.1952 -8.5238 -3.3919 25 6 -0.7489 -8.9635 -2.4503 26 6 1.1779 -4.8001 -0.2037 27 6 1.8201 -3.6468 0.1354 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1495 -1.4296 -1.5628 30 1 -1.2956 -3.5043 -2.1540 31 1 -1.9994 -8.2451 0.6145 32 1 -3.3464 -10.2365 0.1084 33 1 -3.0682 -11.4331 -1.9922 34 1 -1.9339 -11.6635 -4.1803 35 1 -0.2873 -10.8484 -5.7795 36 1 1.0679 -8.8579 -5.2881 37 1 0.7974 -7.6505 -3.1895 38 1 1.5403 -5.7478 0.1663 39 1 2.6905 -3.6800 0.7739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758145382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:56 Heat of formation + Delta-G solvation = -31.788583 kcal Electronic energy + Delta-G solvation = -24524.476618 eV Core-core repulsion = 20939.935605 eV Total energy + Delta-G solvation = -3584.541013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.37948 -40.72620 -39.40285 -37.95120 -37.05078 -35.81369 -33.19210 -32.14369 -31.53019 -31.37026 -29.95464 -28.06561 -25.19873 -24.19601 -24.06930 -23.24923 -22.56157 -21.54590 -19.49591 -19.11237 -18.73023 -18.48571 -17.80441 -17.18969 -16.98337 -16.37013 -15.86135 -15.65437 -15.31547 -15.21395 -14.95863 -14.60457 -14.57610 -14.29473 -14.10543 -13.80536 -13.74034 -13.35650 -13.06750 -12.89562 -12.78070 -12.63650 -12.43270 -12.34561 -12.03534 -11.88740 -11.65404 -11.53011 -11.40492 -11.19873 -10.83275 -9.70198 -9.68178 -9.58754 -8.88720 -8.84626 -6.60396 -0.63124 -0.04298 0.14041 0.83834 1.08532 1.34523 1.40047 1.52325 1.77769 1.81487 2.12616 2.17659 2.63274 3.08066 3.56554 3.64117 3.71853 3.83892 4.02679 4.04030 4.22699 4.28295 4.33141 4.35216 4.38575 4.54097 4.65434 4.88012 4.88736 4.93068 4.99293 5.08828 5.12271 5.15196 5.21354 5.31113 5.45160 5.49519 5.50708 5.55305 5.69939 5.81329 5.89286 5.92516 6.00920 6.08996 6.43763 6.64784 6.76281 6.99535 8.06110 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027622 B = 0.002704 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.459781 B =10350.790103 C =10752.560214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.033 3.967 3 Si 0.994 3.006 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.453 4.453 8 H 0.099 0.901 9 C 0.106 3.894 10 C -0.198 4.198 11 C -0.039 4.039 12 C -0.292 4.292 13 C 0.516 3.484 14 O -0.557 6.557 15 O -0.299 6.299 16 C 0.057 3.943 17 C -0.127 4.127 18 C -0.110 4.110 19 C -0.093 4.093 20 C -0.065 4.065 21 C -0.099 4.099 22 C -0.117 4.117 23 C -0.111 4.111 24 C -0.135 4.135 25 C -0.078 4.078 26 C -0.022 4.022 27 C -0.246 4.246 28 H 0.300 0.700 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 -16.045 -4.107 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.176 1.176 7 C -0.479 4.479 8 H 0.117 0.883 9 C 0.103 3.897 10 C -0.217 4.217 11 C -0.058 4.058 12 C -0.294 4.294 13 C 0.370 3.630 14 O -0.450 6.450 15 O -0.215 6.215 16 C 0.016 3.984 17 C -0.145 4.145 18 C -0.128 4.128 19 C -0.111 4.111 20 C -0.066 4.066 21 C -0.117 4.117 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.153 4.153 25 C -0.079 4.079 26 C -0.041 4.041 27 C -0.265 4.265 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.184 0.816 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.180 0.820 36 H 0.160 0.840 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.157 -15.896 -4.301 16.608 hybrid contribution 0.220 1.247 0.195 1.281 sum -1.937 -14.649 -4.106 15.336 Atomic orbital electron populations 1.69767 1.09627 1.32185 1.29943 1.27122 0.95547 1.05420 0.90674 0.85058 0.78751 0.74304 0.80633 1.18039 1.19025 1.17579 1.20289 0.98729 0.91648 1.37214 0.88287 1.18205 0.90687 0.93601 0.87243 1.20939 1.00802 0.96491 1.03489 1.20494 0.97169 0.91638 0.96517 1.18330 1.05346 0.88539 1.17193 1.21826 0.81626 0.83232 0.76327 1.90703 1.28737 1.87260 1.38339 1.84626 1.50821 1.14376 1.71630 1.19004 0.96151 0.87902 0.95366 1.21547 0.93827 0.99209 0.99949 1.21061 0.99194 0.93891 0.98665 1.21553 0.96588 1.00516 0.92406 1.18402 0.96826 0.94169 0.97155 1.21487 0.98479 1.00264 0.91459 1.21296 0.95395 0.95844 1.00964 1.21202 0.99937 0.95838 0.95881 1.20965 0.98516 1.00208 0.95616 1.18479 0.98476 0.97313 0.93597 1.20744 0.92241 0.98136 0.92969 1.20953 1.05127 0.92267 1.08149 0.88853 0.86877 0.88402 0.84985 0.81551 0.80732 0.81174 0.82019 0.83951 0.88332 0.85728 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.14 10.94 21.87 0.24 -37.90 16 2 C 0.03 1.49 5.15 85.36 0.44 1.93 16 3 Si 0.99 33.72 29.59 68.60 2.03 35.75 16 4 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 5 H -0.27 -8.60 7.11 99.48 0.71 -7.90 16 6 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 7 C -0.45 -22.04 9.05 23.45 0.21 -21.83 16 8 H 0.10 4.45 7.90 -2.91 -0.02 4.43 16 9 C 0.11 5.46 5.57 -21.27 -0.12 5.34 16 10 C -0.20 -10.40 8.62 22.47 0.19 -10.21 16 11 C -0.04 -2.02 9.52 22.26 0.21 -1.81 16 12 C -0.29 -14.37 5.89 -19.95 -0.12 -14.49 16 13 C 0.52 24.63 7.45 70.26 0.52 25.15 16 14 O -0.56 -28.80 16.09 19.75 0.32 -28.48 16 15 O -0.30 -12.77 8.55 0.76 0.01 -12.77 16 16 C 0.06 2.16 4.96 22.81 0.11 2.27 16 17 C -0.13 -3.96 9.94 22.37 0.22 -3.73 16 18 C -0.11 -2.48 9.94 22.02 0.22 -2.27 16 19 C -0.09 -1.91 9.75 22.34 0.22 -1.69 16 20 C -0.07 -1.72 5.74 -21.30 -0.12 -1.84 16 21 C -0.10 -1.92 9.77 22.34 0.22 -1.70 16 22 C -0.12 -2.29 9.95 22.04 0.22 -2.07 16 23 C -0.11 -2.83 9.95 22.05 0.22 -2.61 16 24 C -0.13 -4.60 9.43 22.31 0.21 -4.39 16 25 C -0.08 -2.71 5.74 -21.22 -0.12 -2.84 16 26 C -0.02 -1.03 9.55 22.26 0.21 -0.81 16 27 C -0.25 -11.58 9.73 22.47 0.22 -11.36 16 28 H 0.30 12.87 8.29 -92.71 -0.77 12.11 16 29 H 0.11 6.05 6.18 -2.91 -0.02 6.03 16 30 H 0.10 4.96 7.63 -2.91 -0.02 4.94 16 31 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 32 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.10 3.75 7.41 -2.91 -0.02 3.73 16 38 H 0.12 5.05 7.59 -2.91 -0.02 5.03 16 39 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -66.46 343.60 6.85 -59.62 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 1.08 Total: 32.75 kcal Atomic # 6 Polarization: -52.14 SS G_CDS: 3.17 Total: -48.96 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.24 Total: -37.90 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: 0.32 Total: -41.25 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Total: -66.46 6.85 -59.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758145382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.830 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds