Wall clock time and date at job start Tue Mar 31 2020 11:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00114 * 2 1 4 4 C 1.50700 * 109.47118 * 179.97438 * 3 2 1 5 5 N 1.31128 * 126.55401 * 90.24951 * 4 3 2 6 6 C 1.34492 * 105.62019 * 180.11941 * 5 4 3 7 7 C 1.50699 * 126.29063 * 179.90409 * 6 5 4 8 8 O 1.45201 * 109.46971 * 269.71242 * 7 6 5 9 9 C 1.34804 * 116.99925 * 179.97438 * 8 7 6 10 10 O 1.21528 * 120.00367 * 0.02562 * 9 8 7 11 11 C 1.47288 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.39296 * 120.28614 * 354.58297 * 11 9 8 13 13 C 1.38205 * 120.08333 * 180.27751 * 12 11 9 14 14 C 1.38835 * 120.68243 * 359.71619 * 13 12 11 15 15 C 1.37595 * 120.58501 * 0.02562 * 14 13 12 16 16 C 1.40704 * 119.88753 * 359.97438 * 15 14 13 17 17 C 1.40862 * 120.33371 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00308 * 145.50787 * 17 16 15 19 19 C 1.40295 * 119.99445 * 325.50320 * 17 16 15 20 20 N 1.30620 * 120.00267 * 339.91007 * 19 17 16 21 21 Si 1.86800 * 119.99806 * 159.91473 * 19 17 16 22 22 H 1.48502 * 109.47349 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.46882 * 299.99536 * 21 19 17 24 24 H 1.48503 * 109.47282 * 59.99574 * 21 19 17 25 25 N 1.29951 * 107.41946 * 359.64287 * 6 5 4 26 26 O 1.21294 * 110.25300 * 0.22711 * 25 6 5 27 27 H 1.09000 * 109.46760 * 60.00264 * 1 2 3 28 28 H 1.09005 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47062 * 300.00160 * 1 2 3 30 30 H 1.08994 * 109.47440 * 59.99720 * 3 2 1 31 31 H 1.09003 * 109.46779 * 299.99701 * 3 2 1 32 32 H 1.08999 * 109.47218 * 149.71443 * 7 6 5 33 33 H 1.08993 * 109.47210 * 29.71209 * 7 6 5 34 34 H 1.07995 * 119.95909 * 359.97438 * 12 11 9 35 35 H 1.08000 * 119.65873 * 179.74325 * 13 12 11 36 36 H 1.08005 * 119.70600 * 180.02562 * 14 13 12 37 37 H 1.08006 * 120.05534 * 180.02562 * 15 14 13 38 38 H 0.96995 * 119.99928 * 354.71661 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2919 1.1291 -1.0524 6 6 5.5435 1.0252 -0.5713 7 6 6.8070 0.9254 -1.3866 8 8 7.1052 -0.4714 -1.6480 9 6 8.2115 -0.7360 -2.3714 10 8 8.9080 0.1757 -2.7722 11 6 8.5763 -2.1301 -2.6760 12 6 7.8481 -3.1829 -2.1268 13 6 8.1976 -4.4895 -2.4109 14 6 9.2695 -4.7702 -3.2474 15 6 10.0046 -3.7518 -3.8092 16 6 9.6701 -2.4126 -3.5364 17 6 10.4159 -1.3626 -4.1069 18 1 9.9255 -0.4424 -4.3878 19 6 11.7960 -1.5124 -4.3100 20 7 12.4600 -2.4176 -3.6423 21 14 12.6839 -0.4172 -5.5354 22 1 14.1254 -0.7730 -5.5636 23 1 12.0993 -0.6109 -6.8867 24 1 12.5331 1.0033 -5.1298 25 7 5.4636 1.0323 0.7257 26 8 4.3056 1.1242 1.0746 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 7.6320 1.3759 -0.8349 33 1 6.6720 1.4511 -2.3318 34 1 7.0123 -2.9779 -1.4743 35 1 7.6308 -5.3005 -1.9780 36 1 9.5286 -5.7972 -3.4591 37 1 10.8366 -3.9800 -4.4591 38 1 12.0158 -2.9338 -2.9516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759472835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:17 Heat of formation + Delta-G solvation = -36.443449 kcal Electronic energy + Delta-G solvation = -25306.095898 eV Core-core repulsion = 21310.503771 eV Total energy + Delta-G solvation = -3995.592127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.84788 -39.57625 -38.49735 -37.60853 -36.27903 -35.32280 -34.01312 -33.28849 -30.35486 -29.52736 -28.94184 -28.19181 -26.34803 -25.41628 -23.86287 -22.87463 -21.66524 -21.08862 -19.97730 -18.46671 -18.16060 -17.84965 -16.87833 -16.69299 -16.58604 -16.21342 -15.89968 -15.47104 -14.85771 -14.29400 -14.18636 -13.87921 -13.75032 -13.19724 -12.93791 -12.82705 -12.53515 -12.40526 -12.29186 -12.10333 -11.93251 -11.62649 -11.29680 -11.22641 -11.00849 -10.80107 -10.43951 -10.35371 -10.33442 -10.26275 -10.17581 -9.79532 -9.17586 -8.97224 -7.90213 -7.72111 -7.30109 -4.61601 0.79280 1.76762 2.03365 2.37652 2.68816 3.13096 3.14711 3.25165 3.35176 3.42702 3.69338 3.76395 3.95952 3.98703 4.44634 4.50677 4.64212 4.81628 4.84066 4.91296 5.21176 5.24073 5.31769 5.43039 5.50058 5.74209 5.93243 5.98402 6.14888 6.39201 6.42902 6.68727 6.87502 7.06092 7.23508 7.42891 7.51506 7.67929 7.76737 7.92905 8.00950 8.09065 8.56503 8.68827 8.89166 9.90883 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.002897 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.062306 B = 9664.351916 C =10619.347896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.161 3.839 4 C 0.171 3.829 5 N -0.444 5.444 6 C 0.177 3.823 7 C 0.161 3.839 8 O -0.364 6.364 9 C 0.508 3.492 10 O -0.510 6.510 11 C -0.253 4.253 12 C -0.022 4.022 13 C -0.259 4.259 14 C -0.069 4.069 15 C -0.199 4.199 16 C 0.122 3.878 17 C -0.464 4.464 18 H 0.104 0.896 19 C 0.032 3.968 20 N -0.783 5.783 21 Si 1.071 2.929 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.272 1.272 25 N -0.355 5.355 26 O 0.097 5.903 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.193 6.797 5.944 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.082 3.918 4 C -0.051 4.051 5 N -0.179 5.179 6 C -0.096 4.096 7 C 0.085 3.915 8 O -0.282 6.282 9 C 0.359 3.641 10 O -0.401 6.401 11 C -0.256 4.256 12 C -0.040 4.040 13 C -0.278 4.278 14 C -0.088 4.088 15 C -0.218 4.218 16 C 0.118 3.882 17 C -0.490 4.490 18 H 0.122 0.878 19 C -0.191 4.191 20 N -0.406 5.406 21 Si 0.893 3.107 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.197 1.197 25 N -0.059 5.059 26 O 0.032 5.968 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.530 7.096 5.223 17.855 hybrid contribution -1.940 -0.147 0.924 2.154 sum -17.470 6.949 6.147 19.781 Atomic orbital electron populations 1.22863 0.78995 1.03851 1.00613 1.87991 1.21058 1.25345 1.95623 1.20563 0.80024 0.86958 1.04238 1.28229 0.97681 0.98237 0.80915 1.71882 1.00256 1.17121 1.28688 1.25410 0.94714 1.01565 0.87904 1.20575 0.88808 0.83799 0.98338 1.86631 1.46179 1.26035 1.69394 1.21370 0.76914 0.91040 0.74788 1.90756 1.50631 1.47307 1.51357 1.18613 1.08284 0.87067 1.11642 1.20908 0.95684 0.92556 0.94888 1.20334 1.03211 0.95204 1.09057 1.20814 0.94750 0.97457 0.95779 1.21203 1.03200 0.92287 1.05116 1.17451 0.90217 0.92759 0.87774 1.21193 0.95034 1.02413 1.30337 0.87794 1.27334 0.95740 0.97273 0.98733 1.70383 1.41248 1.14384 1.14545 0.83552 0.76151 0.75739 0.75232 1.19744 1.19769 1.19668 1.74704 0.97309 1.18152 1.15738 1.85319 1.11685 1.64225 1.35607 0.93218 0.88717 0.93287 0.89065 0.88182 0.88635 0.88196 0.87955 0.88501 0.88512 0.87202 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.51 10.69 -35.23 -0.38 -3.89 16 3 C 0.16 1.16 6.56 36.01 0.24 1.39 16 4 C 0.17 2.06 8.14 -13.06 -0.11 1.95 16 5 N -0.44 -6.79 11.55 -9.87 -0.11 -6.91 16 6 C 0.18 2.94 7.86 -156.37 -1.23 1.71 16 7 C 0.16 2.87 6.10 36.01 0.22 3.09 16 8 O -0.36 -7.88 9.47 -40.78 -0.39 -8.26 16 9 C 0.51 12.48 7.84 34.41 0.27 12.75 16 10 O -0.51 -13.30 13.40 -19.29 -0.26 -13.56 16 11 C -0.25 -6.44 5.92 -104.39 -0.62 -7.06 16 12 C -0.02 -0.50 9.60 -39.20 -0.38 -0.88 16 13 C -0.26 -5.63 10.03 -39.37 -0.39 -6.03 16 14 C -0.07 -1.53 10.01 -39.60 -0.40 -1.93 16 15 C -0.20 -4.92 7.90 -38.89 -0.31 -5.22 16 16 C 0.12 3.25 5.15 -106.53 -0.55 2.70 16 17 C -0.46 -12.52 7.60 -37.82 -0.29 -12.80 16 18 H 0.10 2.89 6.01 -52.49 -0.32 2.58 16 19 C 0.03 0.81 5.02 -17.29 -0.09 0.73 16 20 N -0.78 -20.54 12.59 55.57 0.70 -19.84 16 21 Si 1.07 21.88 29.98 -169.99 -5.10 16.79 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 N -0.36 -5.71 12.16 30.90 0.38 -5.33 16 26 O 0.10 1.29 11.31 18.10 0.20 1.50 16 27 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.10 2.19 7.61 -52.49 -0.40 1.79 16 35 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.11 2.72 7.00 -52.48 -0.37 2.35 16 38 H 0.30 8.07 6.65 -40.82 -0.27 7.80 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -32.09 341.59 -6.27 -38.36 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.95 Total: 4.32 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.51 Total: -8.32 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.96 Total: -32.08 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.82 Total: -24.21 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.10 Total: 16.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.09 -6.27 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759472835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.915 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds