Wall clock time and date at job start Tue Mar 31 2020 11:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00114 * 2 1 4 4 C 1.50700 * 109.47118 * 179.97438 * 3 2 1 5 5 N 1.31128 * 126.55401 * 90.24951 * 4 3 2 6 6 C 1.34492 * 105.62019 * 180.11941 * 5 4 3 7 7 C 1.50699 * 126.29063 * 179.90409 * 6 5 4 8 8 O 1.45201 * 109.46971 * 269.71242 * 7 6 5 9 9 C 1.34804 * 116.99925 * 179.97438 * 8 7 6 10 10 O 1.21528 * 120.00367 * 0.02562 * 9 8 7 11 11 C 1.47288 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.39296 * 120.28614 * 354.58297 * 11 9 8 13 13 C 1.38205 * 120.08333 * 180.27751 * 12 11 9 14 14 C 1.38835 * 120.68243 * 359.71619 * 13 12 11 15 15 C 1.37595 * 120.58501 * 0.02562 * 14 13 12 16 16 C 1.40704 * 119.88753 * 359.97438 * 15 14 13 17 17 C 1.40862 * 120.33371 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00308 * 145.50787 * 17 16 15 19 19 C 1.40295 * 119.99445 * 325.50320 * 17 16 15 20 20 N 1.30620 * 120.00267 * 339.91007 * 19 17 16 21 21 Si 1.86800 * 119.99806 * 159.91473 * 19 17 16 22 22 H 1.48502 * 109.47349 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.46882 * 299.99536 * 21 19 17 24 24 H 1.48503 * 109.47282 * 59.99574 * 21 19 17 25 25 N 1.29951 * 107.41946 * 359.64287 * 6 5 4 26 26 O 1.21294 * 110.25300 * 0.22711 * 25 6 5 27 27 H 1.09000 * 109.46760 * 60.00264 * 1 2 3 28 28 H 1.09005 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47062 * 300.00160 * 1 2 3 30 30 H 1.08994 * 109.47440 * 59.99720 * 3 2 1 31 31 H 1.09003 * 109.46779 * 299.99701 * 3 2 1 32 32 H 1.08999 * 109.47218 * 149.71443 * 7 6 5 33 33 H 1.08993 * 109.47210 * 29.71209 * 7 6 5 34 34 H 1.07995 * 119.95909 * 359.97438 * 12 11 9 35 35 H 1.08000 * 119.65873 * 179.74325 * 13 12 11 36 36 H 1.08005 * 119.70600 * 180.02562 * 14 13 12 37 37 H 1.08006 * 120.05534 * 180.02562 * 15 14 13 38 38 H 0.96995 * 119.99928 * 354.71661 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2919 1.1291 -1.0524 6 6 5.5435 1.0252 -0.5713 7 6 6.8070 0.9254 -1.3866 8 8 7.1052 -0.4714 -1.6480 9 6 8.2115 -0.7360 -2.3714 10 8 8.9080 0.1757 -2.7722 11 6 8.5763 -2.1301 -2.6760 12 6 7.8481 -3.1829 -2.1268 13 6 8.1976 -4.4895 -2.4109 14 6 9.2695 -4.7702 -3.2474 15 6 10.0046 -3.7518 -3.8092 16 6 9.6701 -2.4126 -3.5364 17 6 10.4159 -1.3626 -4.1069 18 1 9.9255 -0.4424 -4.3878 19 6 11.7960 -1.5124 -4.3100 20 7 12.4600 -2.4176 -3.6423 21 14 12.6839 -0.4172 -5.5354 22 1 14.1254 -0.7730 -5.5636 23 1 12.0993 -0.6109 -6.8867 24 1 12.5331 1.0033 -5.1298 25 7 5.4636 1.0323 0.7257 26 8 4.3056 1.1242 1.0746 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 7.6320 1.3759 -0.8349 33 1 6.6720 1.4511 -2.3318 34 1 7.0123 -2.9779 -1.4743 35 1 7.6308 -5.3005 -1.9780 36 1 9.5286 -5.7972 -3.4591 37 1 10.8366 -3.9800 -4.4591 38 1 12.0158 -2.9338 -2.9516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759472835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:16 Heat of formation + Delta-G solvation = -57.845116 kcal Electronic energy + Delta-G solvation = -25307.023943 eV Core-core repulsion = 21310.503771 eV Total energy + Delta-G solvation = -3996.520173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.00512 -41.41896 -39.43503 -39.05293 -37.72931 -36.89692 -35.89074 -34.38994 -32.18975 -31.40296 -29.88844 -29.38323 -27.31667 -26.83516 -25.16821 -24.52363 -23.04904 -22.72183 -21.79392 -20.00827 -19.60667 -19.03599 -18.57776 -17.73450 -17.56267 -17.31886 -17.00675 -16.71085 -16.60400 -16.03840 -15.85133 -15.50777 -14.79212 -14.67431 -14.43812 -14.19753 -14.01087 -13.75698 -13.68697 -13.17968 -13.10697 -12.99432 -12.77710 -12.57333 -12.46673 -12.42061 -12.13448 -11.98633 -11.89594 -11.66674 -11.42456 -11.03245 -10.87443 -10.80722 -9.79175 -9.63189 -9.26212 -6.61385 -0.25250 0.13313 0.54768 0.82591 1.47263 1.48537 1.60874 1.77397 1.77842 1.81031 2.27235 2.34758 2.62075 2.64691 3.05864 3.39731 3.58639 3.83052 3.97480 4.06465 4.19083 4.23075 4.25047 4.37920 4.40030 4.54445 4.63078 4.66446 4.69185 4.81977 4.95002 4.98757 5.20775 5.35425 5.53804 5.61204 5.75639 5.85555 5.99404 6.08384 6.19800 6.62547 6.72388 6.82749 6.99694 7.92279 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.002897 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.062306 B = 9664.351916 C =10619.347896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.158 3.842 4 C 0.189 3.811 5 N -0.472 5.472 6 C 0.159 3.841 7 C 0.159 3.841 8 O -0.366 6.366 9 C 0.509 3.491 10 O -0.534 6.534 11 C -0.278 4.278 12 C -0.029 4.029 13 C -0.244 4.244 14 C -0.060 4.060 15 C -0.218 4.218 16 C 0.101 3.899 17 C -0.501 4.501 18 H 0.085 0.915 19 C 0.001 3.999 20 N -0.801 5.801 21 Si 1.116 2.884 22 H -0.263 1.263 23 H -0.256 1.256 24 H -0.269 1.269 25 N -0.371 5.371 26 O 0.109 5.891 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.455 6.384 6.581 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C 0.081 3.919 4 C -0.032 4.032 5 N -0.207 5.207 6 C -0.113 4.113 7 C 0.084 3.916 8 O -0.283 6.283 9 C 0.360 3.640 10 O -0.426 6.426 11 C -0.281 4.281 12 C -0.047 4.047 13 C -0.263 4.263 14 C -0.079 4.079 15 C -0.237 4.237 16 C 0.097 3.903 17 C -0.527 4.527 18 H 0.103 0.897 19 C -0.216 4.216 20 N -0.424 5.424 21 Si 0.933 3.067 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.194 1.194 25 N -0.074 5.074 26 O 0.041 5.959 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.828 6.667 5.867 19.917 hybrid contribution -1.556 -0.087 0.897 1.798 sum -19.383 6.580 6.763 21.558 Atomic orbital electron populations 1.23073 0.76830 1.04518 1.02352 1.87922 1.23390 1.26390 1.96019 1.21060 0.76546 0.86948 1.07366 1.29253 0.99259 0.95136 0.79527 1.71868 1.00027 1.18713 1.30050 1.25144 0.94790 1.03255 0.88127 1.20708 0.89999 0.81732 0.99158 1.86565 1.44731 1.28543 1.68481 1.21344 0.77208 0.90788 0.74648 1.90732 1.51603 1.47978 1.52291 1.18968 1.08683 0.88387 1.12022 1.21156 0.95931 0.92712 0.94920 1.20827 1.02458 0.95654 1.07383 1.21238 0.93700 0.98667 0.94268 1.21225 1.03925 0.92358 1.06190 1.17821 0.90775 0.93765 0.87950 1.21182 0.96061 1.02263 1.33217 0.89727 1.28590 0.96003 0.97682 0.99346 1.70493 1.40870 1.15760 1.15233 0.83019 0.75637 0.74130 0.73940 1.18690 1.18056 1.19364 1.74680 0.98783 1.18460 1.15503 1.85290 1.11062 1.63723 1.35804 0.91959 0.88707 0.91041 0.84868 0.86041 0.88277 0.87566 0.86358 0.84556 0.84748 0.88061 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.65 10.69 -148.98 -1.59 -8.24 16 3 C 0.16 1.79 6.56 71.24 0.47 2.26 16 4 C 0.19 4.22 8.14 88.38 0.72 4.94 16 5 N -0.47 -14.09 11.55 -303.19 -3.50 -17.59 16 6 C 0.16 5.29 7.86 138.46 1.09 6.38 16 7 C 0.16 5.83 6.10 71.24 0.43 6.26 16 8 O -0.37 -16.11 9.47 -57.15 -0.54 -16.65 16 9 C 0.51 25.77 7.84 70.20 0.55 26.32 16 10 O -0.53 -29.06 13.40 19.74 0.26 -28.80 16 11 C -0.28 -14.39 5.92 -19.71 -0.12 -14.51 16 12 C -0.03 -1.30 9.60 22.52 0.22 -1.08 16 13 C -0.24 -9.92 10.03 22.40 0.22 -9.70 16 14 C -0.06 -2.54 10.01 22.26 0.22 -2.32 16 15 C -0.22 -10.84 7.90 22.72 0.18 -10.66 16 16 C 0.10 5.51 5.15 -21.10 -0.11 5.40 16 17 C -0.50 -28.19 7.60 23.41 0.18 -28.02 16 18 H 0.08 4.98 6.01 -2.91 -0.02 4.96 16 19 C 0.00 0.06 5.02 85.37 0.43 0.49 16 20 N -0.80 -43.26 12.59 21.88 0.28 -42.98 16 21 Si 1.12 44.95 29.98 68.60 2.06 47.00 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 25 N -0.37 -11.76 12.16 -60.31 -0.73 -12.49 16 26 O 0.11 2.75 11.31 74.82 0.85 3.60 16 27 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 34 H 0.12 4.88 7.61 -2.91 -0.02 4.86 16 35 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.10 5.13 7.00 -2.91 -0.02 5.11 16 38 H 0.29 15.95 6.65 -92.71 -0.62 15.33 16 Total: -1.00 -72.34 341.59 4.07 -68.27 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.26 Total: 20.66 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.73 Total: -12.79 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -3.96 Total: -73.06 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -1.02 Total: -50.09 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.06 Total: 47.00 kcal Total: -72.34 4.07 -68.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759472835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.429 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds