Wall clock time and date at job start Tue Mar 31 2020 12:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35015 * 119.56143 * 2 1 4 4 C 1.40925 * 119.81071 * 179.97438 * 3 2 1 5 5 O 1.35448 * 120.51375 * 179.97438 * 4 3 2 6 6 C 1.38253 * 118.97535 * 0.02562 * 4 3 2 7 7 C 1.39979 * 119.12346 * 359.97438 * 6 4 3 8 8 O 1.22122 * 119.92898 * 179.97438 * 7 6 4 9 9 N 1.34597 * 120.14221 * 359.73167 * 7 6 4 10 10 C 1.46496 * 119.47095 * 180.26778 * 9 7 6 11 11 C 1.50698 * 109.46944 * 270.28170 * 10 9 7 12 12 O 1.21297 * 120.00307 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00012 * 179.97438 * 11 10 9 14 14 C 1.40588 * 120.00055 * 179.97438 * 13 11 10 15 15 C 1.40647 * 126.08530 * 359.69149 * 14 13 11 16 16 N 1.30907 * 108.39102 * 179.81476 * 15 14 13 17 17 N 1.40064 * 108.40341 * 0.44390 * 16 15 14 18 18 C 1.37327 * 126.06860 * 179.69425 * 17 16 15 19 19 H 1.07999 * 120.00270 * 180.02562 * 18 17 16 20 20 C 1.38984 * 119.99933 * 0.02562 * 18 17 16 21 21 N 1.31298 * 120.00351 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47156 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47262 * 120.00059 * 22 20 18 25 25 H 1.48502 * 109.47430 * 240.00241 * 22 20 18 26 26 C 1.35689 * 126.08414 * 180.02562 * 14 13 11 27 27 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47318 * 119.99375 * 1 2 3 29 29 H 1.09000 * 109.47161 * 240.00006 * 1 2 3 30 30 H 1.08005 * 120.10049 * 0.02642 * 3 2 1 31 31 H 0.96693 * 114.00119 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.43900 * 179.97438 * 6 4 3 33 33 H 1.09005 * 109.46846 * 30.27416 * 10 9 7 34 34 H 1.08996 * 109.47546 * 150.27780 * 10 9 7 35 35 H 0.97003 * 119.99646 * 359.97438 * 13 11 10 36 36 H 1.08004 * 125.80189 * 359.96430 * 15 14 13 37 37 H 0.96995 * 120.00113 * 179.97438 * 21 20 18 38 38 H 1.07998 * 126.23973 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1732 1.1744 0.0000 4 6 3.5824 1.1805 0.0005 5 8 4.2651 2.3504 0.0000 6 6 4.2574 -0.0260 0.0005 7 6 3.5229 -1.2176 0.0005 8 8 4.1041 -2.2916 0.0000 9 7 2.1774 -1.1821 0.0060 10 6 1.4233 -2.4381 0.0119 11 6 1.1649 -2.8755 -1.4069 12 8 1.5703 -2.2038 -2.3320 13 7 0.4833 -4.0130 -1.6479 14 6 0.2418 -4.4207 -2.9715 15 6 0.6452 -3.7405 -4.1346 16 7 0.2433 -4.4265 -5.1746 17 7 -0.4386 -5.5618 -4.7189 18 6 -1.0166 -6.5278 -5.5054 19 1 -1.5209 -7.3662 -5.0480 20 6 -0.9526 -6.4265 -6.8901 21 7 -0.3400 -5.4070 -7.4462 22 14 -1.7383 -7.7409 -7.9600 23 1 -2.3603 -8.7761 -7.0958 24 1 -2.7791 -7.1224 -8.8198 25 1 -0.6994 -8.3695 -8.8149 26 6 -0.4275 -5.5373 -3.3543 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.6276 2.1065 0.0004 31 1 5.2262 2.2449 0.0009 32 1 5.3371 -0.0489 0.0005 33 1 1.9994 -3.2053 0.5293 34 1 0.4732 -2.2892 0.5249 35 1 0.1594 -4.5503 -0.9081 36 1 1.1953 -2.8115 -4.1645 37 1 -0.2951 -5.3366 -8.4126 38 1 -0.8701 -6.2726 -2.6987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759765411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:42 Heat of formation + Delta-G solvation = 11.476619 kcal Electronic energy + Delta-G solvation = -25865.789795 eV Core-core repulsion = 21904.568389 eV Total energy + Delta-G solvation = -3961.221405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69071 -39.88453 -38.88573 -38.24110 -36.99684 -34.29345 -33.49287 -33.14248 -31.76248 -30.30057 -28.82863 -27.63920 -27.15781 -24.81340 -22.92215 -22.86465 -21.16769 -20.48092 -19.47723 -18.82334 -17.75310 -17.58180 -17.30371 -16.85573 -15.61934 -15.53065 -15.31626 -15.18999 -14.92837 -14.40112 -14.20667 -13.90730 -13.78935 -13.68619 -13.41964 -13.30028 -13.27728 -12.90710 -12.55761 -12.30092 -11.73166 -11.70769 -11.47146 -11.32672 -11.28381 -10.95777 -10.52036 -10.22943 -10.01301 -9.67395 -9.20234 -9.11327 -8.82851 -8.08230 -8.02528 -6.74405 -6.57271 -4.24872 0.73447 1.84068 2.41838 2.70345 2.98851 3.04177 3.10321 3.36464 3.40697 3.64050 3.71182 3.87290 4.20510 4.35094 4.56906 4.66652 4.79688 4.88223 4.92598 5.00703 5.07076 5.08912 5.17106 5.27232 5.53059 5.58680 5.85822 5.96145 6.21183 6.28997 6.41645 6.84719 6.92645 7.04385 7.06022 7.12500 7.20930 7.83686 8.06136 8.12001 8.23953 8.57187 8.76573 9.35716 9.64710 10.38718 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.002662 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.156927 B =10513.973242 C =10651.051809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.210 3.790 3 C -0.250 4.250 4 C 0.244 3.756 5 O -0.468 6.468 6 C -0.367 4.367 7 C 0.542 3.458 8 O -0.552 6.552 9 N -0.482 5.482 10 C 0.071 3.929 11 C 0.485 3.515 12 O -0.522 6.522 13 N -0.618 5.618 14 C -0.061 4.061 15 C -0.031 4.031 16 N -0.260 5.260 17 N -0.142 5.142 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.082 4.082 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.406 0.594 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.398 0.602 36 H 0.174 0.826 37 H 0.274 0.726 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 10.510 17.403 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.101 3.899 3 C -0.274 4.274 4 C 0.191 3.809 5 O -0.269 6.269 6 C -0.390 4.390 7 C 0.346 3.654 8 O -0.435 6.435 9 N -0.194 5.194 10 C -0.055 4.055 11 C 0.269 3.731 12 O -0.398 6.398 13 N -0.261 5.261 14 C -0.167 4.167 15 C -0.207 4.207 16 N -0.091 5.091 17 N 0.091 4.909 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.172 4.172 21 N -0.395 5.395 22 Si 0.759 3.241 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.234 4.234 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.260 0.740 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.231 0.769 36 H 0.191 0.809 37 H 0.085 0.915 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.398 10.605 15.231 18.563 hybrid contribution 0.230 -0.981 0.776 1.272 sum 0.628 9.624 16.007 18.688 Atomic orbital electron populations 1.21193 0.87689 1.05682 1.04272 1.20247 0.95121 0.84660 0.89905 1.19694 0.91015 0.97636 1.19023 1.19221 0.91591 0.84268 0.85772 1.84782 1.24999 1.28749 1.88397 1.22133 1.01009 0.90564 1.25312 1.16430 0.79871 0.90966 0.78179 1.90973 1.67627 1.31343 1.53528 1.45056 1.08080 1.05799 1.60491 1.21740 0.98928 0.87721 0.97119 1.20327 0.80094 0.82094 0.90572 1.90652 1.50423 1.54123 1.44622 1.42363 1.53903 1.23050 1.06767 1.17232 1.15690 1.00534 0.83215 1.24085 1.05802 1.02139 0.88654 1.78268 1.15127 0.96015 1.19706 1.44566 1.30021 1.14307 1.02037 1.19925 1.34981 1.02310 0.88286 0.86531 1.25655 0.96275 0.97700 0.97529 1.70227 1.31783 1.25807 1.11727 0.85757 0.78931 0.79733 0.79679 1.18680 1.19902 1.19900 1.21251 1.13532 1.02089 0.86479 0.88668 0.88856 0.89431 0.83024 0.74010 0.83392 0.85488 0.86392 0.76880 0.80908 0.91485 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.72 36.01 0.31 -0.62 16 2 C 0.21 2.24 6.64 -81.93 -0.54 1.70 16 3 C -0.25 -2.56 9.57 -39.71 -0.38 -2.94 16 4 C 0.24 2.66 6.95 -38.56 -0.27 2.39 16 5 O -0.47 -3.88 13.58 -18.04 -0.24 -4.13 16 6 C -0.37 -4.81 9.71 -38.92 -0.38 -5.19 16 7 C 0.54 8.78 7.38 -15.69 -0.12 8.66 16 8 O -0.55 -10.99 16.62 4.81 0.08 -10.91 16 9 N -0.48 -6.44 2.08 -116.69 -0.24 -6.68 16 10 C 0.07 0.84 5.34 -5.20 -0.03 0.82 16 11 C 0.49 8.27 7.69 -10.98 -0.08 8.19 16 12 O -0.52 -11.31 13.58 5.54 0.08 -11.24 16 13 N -0.62 -10.54 5.47 -10.00 -0.05 -10.60 16 14 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 15 C -0.03 -0.83 10.85 -17.04 -0.18 -1.02 16 16 N -0.26 -7.63 10.40 30.80 0.32 -7.31 16 17 N -0.14 -3.89 3.74 -11.41 -0.04 -3.94 16 18 C -0.32 -8.53 10.25 -14.81 -0.15 -8.68 16 19 H 0.12 2.75 7.83 -52.49 -0.41 2.33 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.59 11.81 55.49 0.66 -20.94 16 22 Si 0.94 18.92 29.55 -169.99 -5.02 13.90 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 27 H 0.09 0.48 7.81 -51.93 -0.41 0.07 16 28 H 0.09 0.85 7.92 -51.93 -0.41 0.44 16 29 H 0.09 0.40 7.34 -51.93 -0.38 0.02 16 30 H 0.15 1.19 7.88 -52.48 -0.41 0.77 16 31 H 0.41 1.46 8.74 45.56 0.40 1.85 16 32 H 0.15 1.68 8.00 -52.49 -0.42 1.26 16 33 H 0.13 1.46 7.38 -51.93 -0.38 1.08 16 34 H 0.12 0.83 6.36 -51.93 -0.33 0.50 16 35 H 0.40 4.93 8.83 -40.82 -0.36 4.57 16 36 H 0.17 4.63 5.92 -52.48 -0.31 4.32 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -39.93 335.52 -5.09 -45.02 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -2.99 Total: 11.46 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.69 Total: 0.30 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.64 Total: -49.46 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.09 Total: -26.28 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -39.93 -5.09 -45.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759765411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.500 kcal (2) G-P(sol) polarization free energy of solvation -39.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds