Wall clock time and date at job start Tue Mar 31 2020 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35015 * 119.56143 * 2 1 4 4 C 1.40925 * 119.81071 * 179.97438 * 3 2 1 5 5 O 1.35448 * 120.51375 * 179.97438 * 4 3 2 6 6 C 1.38253 * 118.97535 * 0.02562 * 4 3 2 7 7 C 1.39979 * 119.12346 * 359.97438 * 6 4 3 8 8 O 1.22122 * 119.92898 * 179.97438 * 7 6 4 9 9 N 1.34597 * 120.14221 * 359.73167 * 7 6 4 10 10 C 1.46496 * 119.47095 * 180.26778 * 9 7 6 11 11 C 1.50698 * 109.46944 * 270.28170 * 10 9 7 12 12 O 1.21297 * 120.00307 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00012 * 179.97438 * 11 10 9 14 14 C 1.40588 * 120.00055 * 179.97438 * 13 11 10 15 15 C 1.40647 * 126.08530 * 359.69149 * 14 13 11 16 16 N 1.30907 * 108.39102 * 179.81476 * 15 14 13 17 17 N 1.40064 * 108.40341 * 0.44390 * 16 15 14 18 18 C 1.37327 * 126.06860 * 179.69425 * 17 16 15 19 19 H 1.07999 * 120.00270 * 180.02562 * 18 17 16 20 20 C 1.38984 * 119.99933 * 0.02562 * 18 17 16 21 21 N 1.31298 * 120.00351 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47156 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47262 * 120.00059 * 22 20 18 25 25 H 1.48502 * 109.47430 * 240.00241 * 22 20 18 26 26 C 1.35689 * 126.08414 * 180.02562 * 14 13 11 27 27 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47318 * 119.99375 * 1 2 3 29 29 H 1.09000 * 109.47161 * 240.00006 * 1 2 3 30 30 H 1.08005 * 120.10049 * 0.02642 * 3 2 1 31 31 H 0.96693 * 114.00119 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.43900 * 179.97438 * 6 4 3 33 33 H 1.09005 * 109.46846 * 30.27416 * 10 9 7 34 34 H 1.08996 * 109.47546 * 150.27780 * 10 9 7 35 35 H 0.97003 * 119.99646 * 359.97438 * 13 11 10 36 36 H 1.08004 * 125.80189 * 359.96430 * 15 14 13 37 37 H 0.96995 * 120.00113 * 179.97438 * 21 20 18 38 38 H 1.07998 * 126.23973 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1732 1.1744 0.0000 4 6 3.5824 1.1805 0.0005 5 8 4.2651 2.3504 0.0000 6 6 4.2574 -0.0260 0.0005 7 6 3.5229 -1.2176 0.0005 8 8 4.1041 -2.2916 0.0000 9 7 2.1774 -1.1821 0.0060 10 6 1.4233 -2.4381 0.0119 11 6 1.1649 -2.8755 -1.4069 12 8 1.5703 -2.2038 -2.3320 13 7 0.4833 -4.0130 -1.6479 14 6 0.2418 -4.4207 -2.9715 15 6 0.6452 -3.7405 -4.1346 16 7 0.2433 -4.4265 -5.1746 17 7 -0.4386 -5.5618 -4.7189 18 6 -1.0166 -6.5278 -5.5054 19 1 -1.5209 -7.3662 -5.0480 20 6 -0.9526 -6.4265 -6.8901 21 7 -0.3400 -5.4070 -7.4462 22 14 -1.7383 -7.7409 -7.9600 23 1 -2.3603 -8.7761 -7.0958 24 1 -2.7791 -7.1224 -8.8198 25 1 -0.6994 -8.3695 -8.8149 26 6 -0.4275 -5.5373 -3.3543 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.6276 2.1065 0.0004 31 1 5.2262 2.2449 0.0009 32 1 5.3371 -0.0489 0.0005 33 1 1.9994 -3.2053 0.5293 34 1 0.4732 -2.2892 0.5249 35 1 0.1594 -4.5503 -0.9081 36 1 1.1953 -2.8115 -4.1645 37 1 -0.2951 -5.3366 -8.4126 38 1 -0.8701 -6.2726 -2.6987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759765411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:41 Heat of formation + Delta-G solvation = -20.983386 kcal Electronic energy + Delta-G solvation = -25867.197366 eV Core-core repulsion = 21904.568389 eV Total energy + Delta-G solvation = -3962.628977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.71237 -41.64821 -40.19866 -39.35871 -38.06423 -35.97350 -35.02319 -34.37174 -32.60853 -32.27251 -30.30733 -28.65563 -28.40938 -26.67806 -23.97520 -23.77756 -22.91125 -22.02797 -21.25765 -19.72297 -19.44805 -18.62973 -18.31421 -18.10863 -17.43310 -16.78747 -16.64104 -16.49585 -16.27692 -15.71099 -15.31179 -15.11273 -15.07574 -14.84337 -14.70359 -14.64297 -14.29322 -14.14842 -13.50511 -13.44063 -13.32649 -13.11367 -12.93054 -12.86588 -12.52914 -12.28972 -12.03000 -11.89615 -11.21506 -11.05091 -10.97038 -10.81433 -10.18284 -10.12018 -9.03000 -8.55747 -8.47801 -6.25528 -0.15313 0.87563 1.17054 1.38885 1.44068 1.46487 1.59054 1.83769 2.05284 2.25063 2.48145 2.61590 2.69767 2.91035 3.08553 3.46176 3.67547 3.78789 3.98696 4.05087 4.14386 4.35318 4.39010 4.42785 4.58665 4.65414 4.77671 4.99262 5.01982 5.04008 5.06837 5.11313 5.28208 5.41664 5.48902 5.95059 6.05621 6.28659 6.50059 6.66268 6.72306 6.98946 7.31274 7.45872 7.66502 8.51796 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.002662 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.156927 B =10513.973242 C =10651.051809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.203 3.797 3 C -0.256 4.256 4 C 0.264 3.736 5 O -0.461 6.461 6 C -0.401 4.401 7 C 0.521 3.479 8 O -0.610 6.610 9 N -0.487 5.487 10 C 0.080 3.920 11 C 0.484 3.516 12 O -0.571 6.571 13 N -0.608 5.608 14 C -0.044 4.044 15 C -0.061 4.061 16 N -0.312 5.312 17 N -0.168 5.168 18 C -0.352 4.352 19 H 0.143 0.857 20 C -0.008 4.008 21 N -0.826 5.826 22 Si 1.020 2.980 23 H -0.239 1.239 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.077 4.077 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.182 0.818 31 H 0.427 0.573 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.177 0.823 35 H 0.424 0.576 36 H 0.161 0.839 37 H 0.276 0.724 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 10.538 19.802 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.095 3.905 3 C -0.279 4.279 4 C 0.210 3.790 5 O -0.265 6.265 6 C -0.423 4.423 7 C 0.328 3.672 8 O -0.498 6.498 9 N -0.198 5.198 10 C -0.045 4.045 11 C 0.271 3.729 12 O -0.450 6.450 13 N -0.254 5.254 14 C -0.150 4.150 15 C -0.236 4.236 16 N -0.144 5.144 17 N 0.063 4.937 18 C -0.483 4.483 19 H 0.161 0.839 20 C -0.220 4.220 21 N -0.454 5.454 22 Si 0.839 3.161 23 H -0.161 1.161 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.227 4.227 27 H 0.139 0.861 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.199 0.801 31 H 0.284 0.716 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.194 0.806 35 H 0.262 0.738 36 H 0.178 0.822 37 H 0.085 0.915 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.805 10.668 17.712 20.755 hybrid contribution 0.960 -0.768 0.179 1.243 sum -0.845 9.901 17.890 20.464 Atomic orbital electron populations 1.21356 0.84750 1.07773 1.04759 1.20954 0.96978 0.83790 0.88807 1.20195 0.90879 0.98822 1.17975 1.19297 0.92169 0.84107 0.83443 1.84768 1.26939 1.27391 1.87361 1.22164 1.01508 0.90716 1.27943 1.16914 0.81016 0.91088 0.78142 1.90918 1.68951 1.33076 1.56901 1.45074 1.07518 1.07151 1.60073 1.21905 1.01586 0.87658 0.93396 1.21323 0.78209 0.81043 0.92349 1.90640 1.51938 1.55554 1.46877 1.42282 1.54124 1.23686 1.05276 1.17292 1.13483 0.99358 0.84866 1.24082 1.06932 1.02344 0.90238 1.78158 1.16886 0.97699 1.21641 1.44863 1.30900 1.14326 1.03624 1.20680 1.35523 1.02991 0.89141 0.83944 1.26909 0.96229 0.99947 0.98889 1.70413 1.34238 1.28672 1.12077 0.84524 0.77602 0.76658 0.77334 1.16135 1.19694 1.20041 1.22036 1.12357 1.02637 0.85704 0.86051 0.90774 0.86062 0.80091 0.71571 0.82924 0.84824 0.80568 0.73769 0.82229 0.91468 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.72 71.24 0.62 -0.73 16 2 C 0.20 3.84 6.64 41.19 0.27 4.11 16 3 C -0.26 -4.57 9.57 22.19 0.21 -4.36 16 4 C 0.26 5.36 6.95 22.93 0.16 5.52 16 5 O -0.46 -6.60 13.58 -87.46 -1.19 -7.78 16 6 C -0.40 -10.61 9.71 22.70 0.22 -10.39 16 7 C 0.52 17.23 7.38 84.69 0.63 17.86 16 8 O -0.61 -25.42 16.62 -5.71 -0.09 -25.52 16 9 N -0.49 -12.45 2.08 -641.23 -1.33 -13.78 16 10 C 0.08 1.73 5.34 85.63 0.46 2.18 16 11 C 0.48 16.15 7.69 87.66 0.67 16.82 16 12 O -0.57 -25.40 13.58 -3.08 -0.04 -25.44 16 13 N -0.61 -19.77 5.47 -303.93 -1.66 -21.43 16 14 C -0.04 -1.99 6.90 37.73 0.26 -1.73 16 15 C -0.06 -3.38 10.85 85.42 0.93 -2.45 16 16 N -0.31 -19.10 10.40 -56.47 -0.59 -19.69 16 17 N -0.17 -9.36 3.74 -190.01 -0.71 -10.07 16 18 C -0.35 -18.63 10.25 84.01 0.86 -17.76 16 19 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 20 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 21 N -0.83 -48.27 11.81 21.66 0.26 -48.02 16 22 Si 1.02 38.71 29.55 68.60 2.03 40.74 16 23 H -0.24 -8.03 7.11 99.48 0.71 -7.32 16 24 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 26 C -0.08 -3.50 11.49 83.38 0.96 -2.55 16 27 H 0.12 0.66 7.81 -2.39 -0.02 0.64 16 28 H 0.07 1.15 7.92 -2.39 -0.02 1.14 16 29 H 0.12 0.46 7.34 -2.39 -0.02 0.44 16 30 H 0.18 2.10 7.88 -2.91 -0.02 2.08 16 31 H 0.43 2.23 8.74 -74.06 -0.65 1.58 16 32 H 0.15 3.62 8.00 -2.91 -0.02 3.60 16 33 H 0.13 2.84 7.38 -2.38 -0.02 2.83 16 34 H 0.18 1.67 6.36 -2.39 -0.02 1.65 16 35 H 0.42 9.16 8.83 -92.71 -0.82 8.34 16 36 H 0.16 9.15 5.92 -2.91 -0.02 9.13 16 37 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.19 6.67 8.06 -2.91 -0.02 6.64 16 Total: -1.00 -95.35 335.52 3.07 -92.28 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: -0.31 Total: 32.15 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 6.72 Total: 6.55 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.03 Total: -112.98 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -1.32 Total: -58.74 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -95.35 3.07 -92.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759765411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.293 kcal (2) G-P(sol) polarization free energy of solvation -95.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds