Wall clock time and date at job start Tue Mar 31 2020 11:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47594 * 240.00362 * 3 2 1 5 5 H 1.48507 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47113 * 119.99874 * 3 2 1 7 7 C 1.37872 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00108 * 175.69595 * 7 2 1 9 9 C 1.50703 * 119.99997 * 355.96643 * 7 2 1 10 10 C 1.53000 * 115.54761 * 39.65089 * 9 7 2 11 11 O 1.42896 * 109.46977 * 54.22946 * 10 9 7 12 12 C 1.34936 * 117.00072 * 184.91189 * 11 10 9 13 13 O 1.21656 * 119.99705 * 5.05303 * 12 11 10 14 14 C 1.41759 * 120.00071 * 185.05094 * 12 11 10 15 15 C 1.35548 * 120.06808 * 185.11311 * 14 12 11 16 16 C 1.46990 * 118.17623 * 182.39402 * 15 14 12 17 17 C 1.39457 * 121.49872 * 192.17420 * 16 15 14 18 18 C 1.38121 * 119.55523 * 179.32233 * 17 16 15 19 19 F 1.35097 * 119.86271 * 180.34987 * 18 17 16 20 20 C 1.38773 * 120.27602 * 0.37263 * 18 17 16 21 21 C 1.38234 * 120.58620 * 0.66876 * 20 18 17 22 22 C 1.38364 * 119.91789 * 359.77408 * 21 20 18 23 23 O 1.35623 * 121.15286 * 177.64130 * 22 21 20 24 24 C 1.43017 * 117.42916 * 146.65977 * 23 22 21 25 25 C 1.53001 * 117.49868 * 253.94663 * 9 7 2 26 26 C 1.53002 * 60.00109 * 252.50876 * 25 9 7 27 27 H 0.96997 * 120.00606 * 4.99514 * 1 2 3 28 28 H 1.09004 * 109.46612 * 174.22596 * 10 9 7 29 29 H 1.08993 * 109.47447 * 294.22437 * 10 9 7 30 30 H 1.07999 * 120.90690 * 2.37287 * 15 14 12 31 31 H 1.08002 * 120.22093 * 359.35095 * 17 16 15 32 32 H 1.08000 * 119.70961 * 180.64384 * 20 18 17 33 33 H 1.07994 * 120.04282 * 179.76797 * 21 20 18 34 34 H 1.09000 * 109.47568 * 287.34888 * 24 23 22 35 35 H 1.09000 * 109.19985 * 167.82219 * 24 23 22 36 36 H 1.09000 * 117.49817 * 359.97438 * 25 9 7 37 37 H 1.08998 * 117.49843 * 145.01892 * 25 9 7 38 38 H 1.08994 * 117.50169 * 252.51316 * 26 25 9 39 39 H 1.09000 * 117.51729 * 107.47802 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0823 -1.1953 -0.0707 9 6 1.2538 -2.4976 0.0907 10 6 -0.0478 -2.5669 -0.7104 11 8 0.2136 -2.2289 -2.0740 12 6 -0.8510 -2.1426 -2.8987 13 8 -1.9769 -2.2581 -2.4526 14 6 -0.6574 -1.9173 -4.2848 15 6 -1.7253 -1.7271 -5.0976 16 6 -1.4800 -1.5505 -6.5361 17 6 -2.4826 -1.1050 -7.3969 18 6 -2.2040 -0.9398 -8.7396 19 9 -3.1687 -0.5017 -9.5779 20 6 -0.9374 -1.2224 -9.2313 21 6 0.0568 -1.6850 -8.3896 22 6 -0.2072 -1.8650 -7.0434 23 8 0.7349 -2.3622 -6.2040 24 6 0.7360 -1.8827 -4.8566 25 6 1.3060 -3.2512 1.4212 26 6 2.0784 -3.7807 0.2112 27 1 -0.4851 0.8368 -0.0731 28 1 -0.4534 -3.5773 -0.6579 29 1 -0.7689 -1.8639 -0.2936 30 1 -2.7289 -1.7063 -4.6992 31 1 -3.4702 -0.8901 -7.0162 32 1 -0.7267 -1.0800 -10.2809 33 1 1.0383 -1.9057 -8.7823 34 1 1.1076 -0.8581 -4.8358 35 1 1.3882 -2.5132 -4.2523 36 1 1.8836 -2.8044 2.2304 37 1 0.4128 -3.7965 1.7261 38 1 1.6934 -4.6743 -0.2799 39 1 3.1639 -3.6821 0.2242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762065170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:56 Heat of formation + Delta-G solvation = -92.393928 kcal Electronic energy + Delta-G solvation = -25947.984414 eV Core-core repulsion = 21930.046130 eV Total energy + Delta-G solvation = -4017.938283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08371 -40.97576 -39.59568 -37.49401 -36.90612 -35.25032 -34.23416 -32.20491 -31.19936 -30.26305 -26.93289 -25.98240 -25.51695 -24.45993 -23.01917 -21.62683 -21.22365 -19.24132 -18.85221 -18.38220 -17.57187 -17.04469 -16.76540 -16.32640 -15.87711 -15.61948 -15.44339 -15.23603 -14.84068 -14.61955 -14.28220 -13.87606 -13.79929 -13.43565 -13.24583 -13.01840 -12.58007 -12.25621 -12.11966 -11.77818 -11.63904 -11.53345 -11.03594 -10.89769 -10.79194 -10.55346 -10.39704 -10.32215 -10.05941 -9.62371 -9.37858 -9.02684 -8.97005 -8.79108 -8.26548 -8.11736 -6.03933 -4.16367 0.11271 0.87704 1.59892 2.98438 3.24652 3.30886 3.32552 3.33883 3.43311 3.59213 3.99083 4.29408 4.31897 4.40575 4.47638 4.69256 4.89522 4.94979 5.13823 5.29389 5.41688 5.45477 5.50526 5.53545 5.74182 5.77734 5.82133 5.99420 6.13320 6.17755 6.22866 6.40109 6.44430 6.60115 6.62050 6.76197 6.92650 7.10426 7.20927 7.41127 7.51246 7.87002 8.28268 8.55321 8.81610 9.46318 10.92911 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.003371 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.328250 B = 8303.342436 C = 8716.324263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.482 4.482 8 H 0.062 0.938 9 C 0.047 3.953 10 C 0.112 3.888 11 O -0.313 6.313 12 C 0.502 3.498 13 O -0.517 6.517 14 C -0.182 4.182 15 C -0.012 4.012 16 C -0.115 4.115 17 C -0.094 4.094 18 C 0.064 3.936 19 F -0.139 7.139 20 C -0.109 4.109 21 C -0.119 4.119 22 C 0.136 3.864 23 O -0.305 6.305 24 C 0.109 3.891 25 C -0.193 4.193 26 C -0.208 4.208 27 H 0.263 0.737 28 H 0.020 0.980 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -2.600 -16.036 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.046 3.954 10 C 0.038 3.962 11 O -0.227 6.227 12 C 0.348 3.652 13 O -0.410 6.410 14 C -0.184 4.184 15 C -0.030 4.030 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.044 3.956 19 F -0.118 7.118 20 C -0.128 4.128 21 C -0.138 4.138 22 C 0.090 3.910 23 O -0.218 6.218 24 C 0.035 3.965 25 C -0.231 4.231 26 C -0.245 4.245 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.136 0.864 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.154 0.846 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.311 -2.607 -15.836 16.215 hybrid contribution -0.053 1.001 0.227 1.028 sum -2.363 -1.606 -15.609 15.869 Atomic orbital electron populations 1.69737 1.05927 1.26949 1.49550 1.24954 0.94837 0.99164 0.94041 0.86581 0.79544 0.82686 0.78779 1.20107 1.21224 1.20089 1.20413 0.92709 0.88377 1.50416 0.91960 1.18895 0.92641 0.90887 0.92928 1.22535 1.00042 0.97121 0.76453 1.86115 1.34858 1.78644 1.23082 1.19238 0.83989 0.74858 0.87115 1.90821 1.25087 1.47285 1.77838 1.20884 0.97202 1.07344 0.92950 1.22287 0.99634 0.91099 0.90018 1.18885 0.93138 1.05687 0.93855 1.21042 0.99931 0.99141 0.91175 1.17445 0.86686 1.03618 0.87813 1.91504 1.62132 1.87442 1.70738 1.21102 0.91144 0.99534 1.01015 1.20413 1.00539 1.02140 0.90709 1.19225 0.87156 0.93700 0.90924 1.86070 1.50795 1.63435 1.21522 1.21860 0.93667 1.02559 0.78376 1.22960 1.01104 1.05871 0.93158 1.22939 0.98187 0.99249 1.04138 0.92635 0.96176 0.86434 0.82929 0.83670 0.83853 0.83548 0.89814 0.84573 0.89785 0.91431 0.91263 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.09 10.49 55.43 0.58 -23.51 16 2 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.48 -12.66 8.75 -34.44 -0.30 -12.96 16 8 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 9 C 0.05 1.14 2.14 -155.66 -0.33 0.80 16 10 C 0.11 2.70 4.47 37.16 0.17 2.87 16 11 O -0.31 -7.15 8.97 -41.14 -0.37 -7.52 16 12 C 0.50 10.45 7.65 32.08 0.25 10.69 16 13 O -0.52 -11.83 15.85 -19.38 -0.31 -12.13 16 14 C -0.18 -3.05 5.82 -104.26 -0.61 -3.65 16 15 C -0.01 -0.17 9.55 -37.00 -0.35 -0.53 16 16 C -0.11 -1.45 5.82 -105.02 -0.61 -2.06 16 17 C -0.09 -1.02 9.83 -39.17 -0.38 -1.40 16 18 C 0.06 0.66 7.29 -39.43 -0.29 0.37 16 19 F -0.14 -1.49 17.26 2.25 0.04 -1.45 16 20 C -0.11 -0.97 10.00 -39.39 -0.39 -1.36 16 21 C -0.12 -1.16 10.00 -39.54 -0.40 -1.56 16 22 C 0.14 1.70 6.47 -38.65 -0.25 1.45 16 23 O -0.30 -4.18 10.40 -18.57 -0.19 -4.37 16 24 C 0.11 1.60 6.73 35.98 0.24 1.85 16 25 C -0.19 -4.20 9.96 -26.73 -0.27 -4.47 16 26 C -0.21 -4.36 9.92 -26.73 -0.27 -4.63 16 27 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 28 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.12 3.17 5.74 -51.93 -0.30 2.87 16 30 H 0.15 2.11 7.54 -52.49 -0.40 1.71 16 31 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.14 1.98 7.61 -51.93 -0.39 1.59 16 36 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -29.20 343.61 -8.42 -37.62 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.44 Total: 3.48 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.89 Total: -12.78 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.58 Total: -23.51 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.87 Total: -24.02 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.20 -8.42 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762065170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.770 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds