Wall clock time and date at job start Tue Mar 31 2020 11:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47594 * 240.00362 * 3 2 1 5 5 H 1.48507 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47113 * 119.99874 * 3 2 1 7 7 C 1.37872 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00108 * 175.69595 * 7 2 1 9 9 C 1.50703 * 119.99997 * 355.96643 * 7 2 1 10 10 C 1.53000 * 115.54761 * 39.65089 * 9 7 2 11 11 O 1.42896 * 109.46977 * 54.22946 * 10 9 7 12 12 C 1.34936 * 117.00072 * 184.91189 * 11 10 9 13 13 O 1.21656 * 119.99705 * 5.05303 * 12 11 10 14 14 C 1.41759 * 120.00071 * 185.05094 * 12 11 10 15 15 C 1.35548 * 120.06808 * 185.11311 * 14 12 11 16 16 C 1.46990 * 118.17623 * 182.39402 * 15 14 12 17 17 C 1.39457 * 121.49872 * 192.17420 * 16 15 14 18 18 C 1.38121 * 119.55523 * 179.32233 * 17 16 15 19 19 F 1.35097 * 119.86271 * 180.34987 * 18 17 16 20 20 C 1.38773 * 120.27602 * 0.37263 * 18 17 16 21 21 C 1.38234 * 120.58620 * 0.66876 * 20 18 17 22 22 C 1.38364 * 119.91789 * 359.77408 * 21 20 18 23 23 O 1.35623 * 121.15286 * 177.64130 * 22 21 20 24 24 C 1.43017 * 117.42916 * 146.65977 * 23 22 21 25 25 C 1.53001 * 117.49868 * 253.94663 * 9 7 2 26 26 C 1.53002 * 60.00109 * 252.50876 * 25 9 7 27 27 H 0.96997 * 120.00606 * 4.99514 * 1 2 3 28 28 H 1.09004 * 109.46612 * 174.22596 * 10 9 7 29 29 H 1.08993 * 109.47447 * 294.22437 * 10 9 7 30 30 H 1.07999 * 120.90690 * 2.37287 * 15 14 12 31 31 H 1.08002 * 120.22093 * 359.35095 * 17 16 15 32 32 H 1.08000 * 119.70961 * 180.64384 * 20 18 17 33 33 H 1.07994 * 120.04282 * 179.76797 * 21 20 18 34 34 H 1.09000 * 109.47568 * 287.34888 * 24 23 22 35 35 H 1.09000 * 109.19985 * 167.82219 * 24 23 22 36 36 H 1.09000 * 117.49817 * 359.97438 * 25 9 7 37 37 H 1.08998 * 117.49843 * 145.01892 * 25 9 7 38 38 H 1.08994 * 117.50169 * 252.51316 * 26 25 9 39 39 H 1.09000 * 117.51729 * 107.47802 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0823 -1.1953 -0.0707 9 6 1.2538 -2.4976 0.0907 10 6 -0.0478 -2.5669 -0.7104 11 8 0.2136 -2.2289 -2.0740 12 6 -0.8510 -2.1426 -2.8987 13 8 -1.9769 -2.2581 -2.4526 14 6 -0.6574 -1.9173 -4.2848 15 6 -1.7253 -1.7271 -5.0976 16 6 -1.4800 -1.5505 -6.5361 17 6 -2.4826 -1.1050 -7.3969 18 6 -2.2040 -0.9398 -8.7396 19 9 -3.1687 -0.5017 -9.5779 20 6 -0.9374 -1.2224 -9.2313 21 6 0.0568 -1.6850 -8.3896 22 6 -0.2072 -1.8650 -7.0434 23 8 0.7349 -2.3622 -6.2040 24 6 0.7360 -1.8827 -4.8566 25 6 1.3060 -3.2512 1.4212 26 6 2.0784 -3.7807 0.2112 27 1 -0.4851 0.8368 -0.0731 28 1 -0.4534 -3.5773 -0.6579 29 1 -0.7689 -1.8639 -0.2936 30 1 -2.7289 -1.7063 -4.6992 31 1 -3.4702 -0.8901 -7.0162 32 1 -0.7267 -1.0800 -10.2809 33 1 1.0383 -1.9057 -8.7823 34 1 1.1076 -0.8581 -4.8358 35 1 1.3882 -2.5132 -4.2523 36 1 1.8836 -2.8044 2.2304 37 1 0.4128 -3.7965 1.7261 38 1 1.6934 -4.6743 -0.2799 39 1 3.1639 -3.6821 0.2242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762065170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:55 Heat of formation + Delta-G solvation = -106.062478 kcal Electronic energy + Delta-G solvation = -25948.577126 eV Core-core repulsion = 21930.046130 eV Total energy + Delta-G solvation = -4018.530996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90399 -42.10171 -41.10507 -38.69805 -38.37915 -36.95497 -35.43838 -34.17988 -32.19256 -31.16297 -28.60824 -27.48002 -27.05480 -25.75364 -23.88825 -23.07856 -22.73021 -21.11670 -20.12548 -19.41171 -18.75067 -18.46890 -18.00685 -17.78627 -17.29634 -16.83712 -16.70167 -16.52870 -16.35087 -15.75749 -15.63509 -15.26353 -14.89155 -14.61857 -14.34508 -14.23347 -13.95299 -13.78412 -13.52234 -13.44381 -12.90970 -12.84145 -12.71543 -12.59394 -12.35609 -12.12235 -12.01550 -11.68007 -11.39434 -11.27429 -11.18360 -10.91383 -10.66555 -10.14043 -9.88927 -9.12092 -8.00964 -6.19959 -0.96164 0.03124 0.53201 1.43158 1.44312 1.51651 1.79147 1.97363 2.21162 2.42286 2.48361 3.02774 3.11133 3.31206 3.39092 3.47995 3.60608 3.84015 3.94781 4.08617 4.24172 4.25436 4.29822 4.39870 4.47022 4.59013 4.68334 4.69437 4.77813 4.89762 4.92400 4.96304 5.00518 5.09935 5.19110 5.20407 5.46063 5.52893 5.55079 5.78050 5.86080 6.12057 6.33477 6.76708 6.91812 7.44782 8.92905 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.003371 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.328250 B = 8303.342436 C = 8716.324263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.008 3.992 10 C 0.121 3.879 11 O -0.323 6.323 12 C 0.502 3.498 13 O -0.551 6.551 14 C -0.224 4.224 15 C 0.023 3.977 16 C -0.140 4.140 17 C -0.088 4.088 18 C 0.057 3.943 19 F -0.140 7.140 20 C -0.087 4.087 21 C -0.114 4.114 22 C 0.120 3.880 23 O -0.308 6.308 24 C 0.121 3.879 25 C -0.188 4.188 26 C -0.184 4.184 27 H 0.258 0.742 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -2.540 -18.612 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.170 4.170 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.008 3.992 10 C 0.047 3.953 11 O -0.238 6.238 12 C 0.350 3.650 13 O -0.446 6.446 14 C -0.225 4.225 15 C 0.004 3.996 16 C -0.141 4.141 17 C -0.107 4.107 18 C 0.038 3.962 19 F -0.119 7.119 20 C -0.105 4.105 21 C -0.132 4.132 22 C 0.075 3.925 23 O -0.221 6.221 24 C 0.046 3.954 25 C -0.226 4.226 26 C -0.221 4.221 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.196 0.804 33 H 0.191 0.809 34 H 0.103 0.897 35 H 0.148 0.852 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.510 -2.557 -18.423 18.661 hybrid contribution -0.394 0.962 0.826 1.327 sum -1.904 -1.595 -17.597 17.772 Atomic orbital electron populations 1.69927 1.07069 1.27006 1.50638 1.25619 0.95465 1.01979 0.93964 0.85705 0.78397 0.79108 0.79042 1.19322 1.21480 1.19562 1.20671 0.92716 0.89657 1.50233 0.92294 1.19026 0.93542 0.91743 0.94923 1.22239 0.99430 0.96378 0.77219 1.86112 1.35853 1.79129 1.22659 1.19856 0.83140 0.73681 0.88275 1.90784 1.25908 1.49291 1.78655 1.20757 0.99034 1.11774 0.90933 1.22520 0.99090 0.86835 0.91112 1.18828 0.94202 1.08299 0.92760 1.21194 1.00071 0.98001 0.91440 1.17587 0.87333 1.03768 0.87559 1.91512 1.62314 1.87469 1.70607 1.21506 0.89853 0.96642 1.02507 1.20740 1.01962 1.01131 0.89363 1.19615 0.86803 0.94224 0.91890 1.86049 1.51220 1.63848 1.21009 1.21648 0.92332 1.02446 0.78931 1.22970 1.01763 1.05214 0.92617 1.22959 0.98348 0.98072 1.02717 0.93272 0.95566 0.89724 0.82805 0.82327 0.80370 0.80938 0.89736 0.85228 0.89899 0.90181 0.89418 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.06 10.49 21.45 0.23 -50.84 16 2 C 0.03 1.57 5.39 84.65 0.46 2.03 16 3 Si 0.95 42.43 29.54 68.60 2.03 44.46 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.50 -26.32 8.75 25.60 0.22 -26.10 16 8 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 9 C 0.01 0.39 2.14 -52.92 -0.11 0.28 16 10 C 0.12 6.05 4.47 71.98 0.32 6.37 16 11 O -0.32 -15.34 8.97 -58.51 -0.52 -15.86 16 12 C 0.50 21.83 7.65 68.69 0.53 22.35 16 13 O -0.55 -26.46 15.85 19.33 0.31 -26.15 16 14 C -0.22 -7.69 5.82 -19.63 -0.11 -7.80 16 15 C 0.02 0.67 9.55 23.94 0.23 0.90 16 16 C -0.14 -3.36 5.82 -20.12 -0.12 -3.47 16 17 C -0.09 -1.73 9.83 22.54 0.22 -1.51 16 18 C 0.06 0.99 7.29 22.37 0.16 1.16 16 19 F -0.14 -2.58 17.26 44.97 0.78 -1.80 16 20 C -0.09 -1.17 10.00 22.40 0.22 -0.95 16 21 C -0.11 -1.81 10.00 22.30 0.22 -1.59 16 22 C 0.12 2.78 6.47 22.87 0.15 2.93 16 23 O -0.31 -8.16 10.40 -89.36 -0.93 -9.09 16 24 C 0.12 3.60 6.73 71.22 0.48 4.08 16 25 C -0.19 -8.09 9.96 30.60 0.30 -7.79 16 26 C -0.18 -7.51 9.92 30.60 0.30 -7.21 16 27 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 28 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16 29 H 0.08 4.79 5.74 -2.39 -0.01 4.78 16 30 H 0.15 4.32 7.54 -2.91 -0.02 4.30 16 31 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.13 3.92 7.61 -2.39 -0.02 3.90 16 36 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -64.17 343.61 6.44 -57.72 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.09 Total: 17.89 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 3.48 Total: -16.32 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.23 Total: -50.84 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -1.15 Total: -51.11 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -64.17 6.44 -57.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762065170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.338 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds