Wall clock time and date at job start Tue Mar 31 2020 12:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48497 * 109.47339 * 274.66322 * 3 2 1 5 5 H 1.48504 * 109.47202 * 34.66653 * 3 2 1 6 6 H 1.48502 * 109.46803 * 154.66408 * 3 2 1 7 7 C 1.39944 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99983 * 162.22681 * 7 2 1 9 9 C 1.41395 * 119.99710 * 342.23446 * 7 2 1 10 10 C 1.40721 * 120.24393 * 155.28655 * 9 7 2 11 11 C 1.37613 * 119.74894 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24358 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.74665 * 180.02562 * 12 11 10 14 14 S 1.81398 * 109.47332 * 89.99782 * 13 12 11 15 15 C 1.81404 * 103.00037 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47032 * 180.02562 * 15 14 13 17 17 H 1.09004 * 110.37881 * 305.70488 * 16 15 14 18 18 C 1.54734 * 110.42852 * 183.31456 * 16 15 14 19 19 C 1.53882 * 101.88990 * 214.74332 * 18 16 15 20 20 C 1.52319 * 121.20671 * 231.06444 * 19 18 16 21 21 C 1.52319 * 121.22152 * 159.06830 * 19 18 16 22 22 C 1.50703 * 105.54704 * 15.04243 * 19 18 16 23 23 O 1.20833 * 125.25800 * 182.36746 * 22 19 18 24 24 O 1.34587 * 109.52446 * 2.39047 * 22 19 18 25 25 C 1.38627 * 120.50220 * 0.29773 * 12 11 10 26 26 C 1.37617 * 120.25202 * 359.45045 * 25 12 11 27 27 H 0.97002 * 119.99558 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12366 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87801 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47085 * 330.00089 * 13 12 11 31 31 H 1.09000 * 109.47025 * 210.00449 * 13 12 11 32 32 H 1.08994 * 109.46796 * 60.00217 * 15 14 13 33 33 H 1.08994 * 109.46787 * 300.00374 * 15 14 13 34 34 H 1.09002 * 110.93840 * 332.89355 * 18 16 15 35 35 H 1.08998 * 110.94437 * 96.59034 * 18 16 15 36 36 H 1.09005 * 117.51886 * 356.79223 * 20 19 18 37 37 H 1.09002 * 117.51820 * 141.91824 * 20 19 18 38 38 H 1.09006 * 117.51607 * 218.05987 * 21 19 18 39 39 H 1.08999 * 117.51832 * 3.13097 * 21 19 18 40 40 H 1.08007 * 119.87158 * 179.70537 * 25 12 11 41 41 H 1.07996 * 120.13155 * 180.27246 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1034 -1.3954 5 1 1.4925 2.6222 0.7964 6 1 3.5856 1.4136 0.5991 7 6 2.0080 -1.2120 -0.0005 8 1 3.0493 -1.2342 -0.2861 9 6 1.3515 -2.4074 0.3726 10 6 1.8217 -3.6493 -0.0932 11 6 1.1746 -4.8064 0.2759 12 6 0.0639 -4.7517 1.1037 13 6 -0.6358 -6.0259 1.5014 14 16 0.0985 -6.6669 3.0313 15 6 -0.8603 -8.1749 3.3434 16 6 -0.3550 -8.8448 4.6228 17 1 0.7198 -9.0164 4.5624 18 6 -1.1020 -10.1779 4.8657 19 6 -1.1933 -10.2149 6.4013 20 6 -0.7473 -11.4399 7.1891 21 6 -2.2322 -11.0743 7.1100 22 6 -0.8727 -8.8153 6.8589 23 8 -0.8038 -8.4566 8.0107 24 8 -0.6752 -8.0258 5.7870 25 6 -0.4114 -3.5335 1.5640 26 6 0.2229 -2.3641 1.2119 27 1 -0.4849 0.8401 -0.0004 28 1 2.6870 -3.6941 -0.7378 29 1 1.5339 -5.7607 -0.0800 30 1 -0.5243 -6.7646 0.7076 31 1 -1.6946 -5.8237 1.6633 32 1 -0.7435 -8.8599 2.5037 33 1 -1.9132 -7.9184 3.4594 34 1 -2.0950 -10.1554 4.4166 35 1 -0.5246 -11.0222 4.4891 36 1 -0.4117 -12.3085 6.6224 37 1 -0.2368 -11.2706 8.1372 38 1 -2.6984 -10.6644 8.0060 39 1 -2.8738 -11.7016 6.4912 40 1 -1.2804 -3.5024 2.2046 41 1 -0.1464 -1.4164 1.5751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762428970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:20 Heat of formation + Delta-G solvation = -60.767521 kcal Electronic energy + Delta-G solvation = -22472.769322 eV Core-core repulsion = 19022.415638 eV Total energy + Delta-G solvation = -3450.353683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23245 -39.48295 -38.81955 -37.73914 -35.85461 -33.53202 -33.01025 -31.20927 -29.47656 -29.13113 -25.94168 -25.19320 -23.56552 -23.00507 -22.90774 -21.85780 -20.96888 -19.25071 -18.28455 -17.92992 -17.43626 -17.13698 -16.63011 -16.28708 -16.04487 -15.71303 -15.64623 -15.41875 -14.88776 -14.49489 -14.31853 -14.17675 -13.87783 -13.82189 -13.77404 -13.44438 -13.29377 -13.10304 -12.73880 -12.57720 -12.48120 -12.43262 -12.08691 -11.89811 -11.60581 -11.50343 -11.30621 -11.23211 -11.11690 -11.02468 -10.76198 -9.39201 -9.19235 -8.67664 -8.55555 -6.35328 0.40619 0.79852 1.11355 1.17453 1.36928 1.49253 1.54045 1.85901 2.06870 2.18892 2.69492 2.74652 2.82709 3.28682 3.32575 3.70036 3.73941 3.90933 3.94433 4.06898 4.16342 4.17630 4.37769 4.50699 4.58940 4.59375 4.60255 4.67933 4.71136 4.85989 4.91478 4.91631 5.02814 5.12850 5.15082 5.33130 5.42218 5.67548 5.69717 5.91924 6.07578 6.17380 6.31472 6.34859 6.66781 6.90451 6.99883 8.29211 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.002163 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.510541 B =12939.685010 C =13403.599200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.083 3.917 10 C -0.245 4.245 11 C -0.069 4.069 12 C -0.200 4.200 13 C 0.005 3.995 14 S -0.318 6.318 15 C -0.080 4.080 16 C 0.097 3.903 17 H 0.107 0.893 18 C -0.090 4.090 19 C -0.234 4.234 20 C -0.121 4.121 21 C -0.122 4.122 22 C 0.502 3.498 23 O -0.505 6.505 24 O -0.359 6.359 25 C -0.087 4.087 26 C -0.193 4.193 27 H 0.289 0.711 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 -24.033 6.376 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.080 3.920 10 C -0.264 4.264 11 C -0.089 4.089 12 C -0.203 4.203 13 C -0.142 4.142 14 S -0.088 6.088 15 C -0.228 4.228 16 C 0.042 3.958 17 H 0.125 0.875 18 C -0.129 4.129 19 C -0.236 4.236 20 C -0.158 4.158 21 C -0.159 4.159 22 C 0.345 3.655 23 O -0.392 6.392 24 O -0.276 6.276 25 C -0.107 4.107 26 C -0.213 4.213 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.674 -23.098 7.481 24.725 hybrid contribution -0.582 1.136 -0.577 1.401 sum -5.256 -21.962 6.905 23.614 Atomic orbital electron populations 1.69878 1.09047 1.30653 1.35147 1.26805 0.95533 1.04654 0.91184 0.85193 0.79150 0.75880 0.79513 1.18392 1.19076 1.18352 1.19883 0.98392 0.92527 1.41779 0.90477 1.18018 0.91718 0.93303 0.88981 1.21189 1.04543 0.93122 1.07577 1.20699 0.94431 0.97124 0.96621 1.18794 1.01452 0.92550 1.07530 1.21906 1.00088 0.97196 0.95014 1.87871 1.52483 1.32108 1.36328 1.23595 1.02466 0.97206 0.99519 1.23663 1.01446 0.89370 0.81349 0.87542 1.22583 1.03781 0.96247 0.90253 1.22312 1.13400 0.90690 0.97181 1.23140 0.97569 0.94495 1.00609 1.23075 0.92492 0.98890 1.01428 1.22780 0.71320 0.87491 0.83864 1.90645 1.49254 1.80773 1.18561 1.87306 1.81175 1.38328 1.20817 1.20754 0.98620 0.92727 0.98636 1.21249 1.00459 0.97004 1.02605 0.90045 0.88166 0.86010 0.88372 0.90026 0.84351 0.88621 0.86779 0.84613 0.83817 0.88927 0.89002 0.83982 0.88116 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.72 10.97 21.83 0.24 -43.49 16 2 C 0.03 1.73 5.14 85.26 0.44 2.16 16 3 Si 0.98 38.89 29.59 68.60 2.03 40.92 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.50 -27.35 9.05 23.46 0.21 -27.14 16 8 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 9 C 0.08 4.59 5.57 -21.29 -0.12 4.47 16 10 C -0.24 -12.15 9.80 22.73 0.22 -11.93 16 11 C -0.07 -2.98 9.67 22.22 0.21 -2.77 16 12 C -0.20 -8.43 5.16 -19.67 -0.10 -8.53 16 13 C 0.00 0.15 6.06 71.24 0.43 0.58 16 14 S -0.32 -9.84 21.62 -56.49 -1.22 -11.06 16 15 C -0.08 -1.42 5.61 71.98 0.40 -1.02 16 16 C 0.10 1.65 3.50 31.18 0.11 1.76 16 17 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 18 C -0.09 -0.72 6.48 31.48 0.20 -0.52 16 19 C -0.23 -3.19 2.44 -53.08 -0.13 -3.32 16 20 C -0.12 -1.07 10.27 30.41 0.31 -0.76 16 21 C -0.12 -1.11 10.28 30.41 0.31 -0.80 16 22 C 0.50 13.06 8.34 71.24 0.59 13.65 16 23 O -0.51 -17.15 18.00 21.58 0.39 -16.76 16 24 O -0.36 -9.91 10.68 -55.27 -0.59 -10.50 16 25 C -0.09 -4.17 9.67 22.22 0.21 -3.96 16 26 C -0.19 -10.54 8.70 22.73 0.20 -10.35 16 27 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 28 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.10 2.55 8.08 -2.39 -0.02 2.53 16 31 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 32 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 0.54 7.93 -2.39 -0.02 0.52 16 35 H 0.14 0.20 8.13 -2.39 -0.02 0.18 16 36 H 0.14 0.32 8.14 -2.38 -0.02 0.30 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.10 5.64 6.18 -2.91 -0.02 5.62 16 Total: -1.00 -73.09 363.68 5.39 -67.69 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 1.03 Total: 21.64 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 3.52 Total: -48.45 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.24 Total: -43.49 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.20 Total: -27.26 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Atomic # 16 Polarization: -9.84 SS G_CDS: -1.22 Total: -11.06 kcal Total: -73.09 5.39 -67.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762428970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.927 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds