Wall clock time and date at job start Tue Mar 31 2020 12:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 109.46566 * 2 1 4 4 C 1.35905 * 116.99392 * 180.02562 * 3 2 1 5 5 C 1.38599 * 120.01625 * 0.29154 * 4 3 2 6 6 C 1.38844 * 119.85958 * 180.30090 * 5 4 3 7 7 N 1.39606 * 120.04726 * 179.70593 * 6 5 4 8 8 C 1.40221 * 120.00299 * 149.09422 * 7 6 5 9 9 C 1.41431 * 126.10141 * 336.08791 * 8 7 6 10 10 N 1.30525 * 108.43449 * 180.02562 * 9 8 7 11 11 N 1.40065 * 108.47640 * 0.02562 * 10 9 8 12 12 C 1.34335 * 126.07377 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99984 * 185.36015 * 12 11 10 14 14 C 1.46453 * 119.99950 * 5.07748 * 12 11 10 15 15 N 1.29454 * 119.99994 * 354.84539 * 14 12 11 16 16 Si 1.86798 * 119.99958 * 174.84089 * 14 12 11 17 17 H 1.48500 * 109.47157 * 94.97375 * 16 14 12 18 18 H 1.48501 * 109.47051 * 214.97051 * 16 14 12 19 19 H 1.48504 * 109.47520 * 334.97498 * 16 14 12 20 20 C 1.35280 * 126.10467 * 156.44034 * 8 7 6 21 21 C 1.39020 * 119.90281 * 359.42924 * 6 5 4 22 22 C 1.38097 * 120.03222 * 0.27445 * 21 6 5 23 23 C 1.38233 * 120.12781 * 0.02562 * 22 21 6 24 24 N 1.48020 * 119.94604 * 179.97438 * 23 22 21 25 25 O 1.31700 * 120.00215 * 359.97438 * 24 23 22 26 26 O 1.31700 * 120.00064 * 180.02562 * 24 23 22 27 27 H 1.08998 * 109.46782 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47091 * 299.99573 * 1 2 3 29 29 H 1.08999 * 109.47460 * 60.00116 * 1 2 3 30 30 H 1.08994 * 109.47091 * 240.00427 * 2 1 3 31 31 H 1.08999 * 109.47460 * 119.99884 * 2 1 3 32 32 H 1.07995 * 120.07105 * 0.02844 * 5 4 3 33 33 H 0.97005 * 119.99800 * 329.08547 * 7 6 5 34 34 H 1.08005 * 125.78082 * 0.05970 * 9 8 7 35 35 H 0.97003 * 120.00526 * 180.02562 * 15 14 12 36 36 H 1.07995 * 126.27923 * 359.97438 * 20 8 7 37 37 H 1.07999 * 119.98770 * 180.30126 * 21 6 5 38 38 H 1.07992 * 119.93854 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1982 0.4265 -0.0072 6 6 5.5741 0.6122 -0.0014 7 7 6.4285 -0.4920 -0.0018 8 6 7.6839 -0.4069 -0.6205 9 6 8.0452 0.4901 -1.6526 10 7 9.2920 0.2718 -1.9714 11 7 9.7810 -0.7650 -1.1666 12 6 11.0241 -1.2731 -1.1998 13 1 11.2728 -2.1319 -0.5941 14 6 12.0404 -0.6661 -2.0621 15 7 11.7168 0.2956 -2.8660 16 14 13.8038 -1.2795 -2.0019 17 1 14.0123 -2.2922 -3.0678 18 1 14.7319 -0.1398 -2.2136 19 1 14.0691 -1.8944 -0.6764 20 6 8.7637 -1.1725 -0.3414 21 6 6.0999 1.8991 -0.0010 22 6 5.2544 2.9911 -0.0006 23 6 3.8843 2.8078 -0.0001 24 7 2.9819 3.9810 0.0009 25 8 3.4844 5.1984 0.0018 26 8 1.6763 3.8077 0.0019 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7869 -0.5720 -0.0124 33 1 6.1536 -1.3180 0.4260 34 1 7.3991 1.2306 -2.1006 35 1 12.3898 0.6974 -3.4374 36 1 8.8159 -1.9587 0.3972 37 1 7.1699 2.0451 -0.0014 38 1 5.6645 3.9901 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771178323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:23 Heat of formation + Delta-G solvation = 80.070967 kcal Electronic energy + Delta-G solvation = -25463.683417 eV Core-core repulsion = 21505.436486 eV Total energy + Delta-G solvation = -3958.246931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00744 -41.39106 -39.59284 -39.21065 -36.53031 -35.26804 -35.21387 -32.83366 -32.70875 -31.89288 -30.89958 -29.34365 -26.87417 -26.31217 -25.23153 -23.25780 -22.99106 -22.33590 -21.35626 -20.16507 -19.54127 -19.09318 -18.53709 -17.81104 -17.47737 -17.42241 -16.70661 -16.61756 -16.46857 -15.74384 -15.59453 -15.38981 -14.99292 -14.78559 -14.40581 -14.04467 -13.75120 -13.54113 -13.39597 -13.21534 -12.95208 -12.87060 -12.77033 -12.33901 -12.26491 -12.20379 -12.07515 -11.91575 -11.70870 -11.64554 -11.23615 -10.86039 -10.34622 -10.05228 -9.69595 -8.66499 -8.29963 -6.09629 -1.58066 0.07611 0.19236 0.34387 1.27292 1.40400 1.56421 1.78016 1.81706 2.03246 2.12236 2.26563 2.48894 2.90888 2.95957 3.35081 3.67360 3.79129 3.88809 4.03999 4.06593 4.26309 4.35893 4.38883 4.40802 4.52715 4.69656 4.82549 4.90115 4.96597 4.98081 5.00506 5.02062 5.14207 5.26097 5.30978 5.68974 5.85060 5.96359 6.04839 6.29089 6.58436 6.77613 7.50128 7.65355 8.31128 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.002729 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.686304 B =10258.715423 C =11199.264527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.033 3.967 3 O -0.298 6.298 4 C 0.245 3.755 5 C -0.274 4.274 6 C 0.310 3.690 7 N -0.605 5.605 8 C -0.037 4.037 9 C -0.065 4.065 10 N -0.321 5.321 11 N -0.141 5.141 12 C -0.381 4.381 13 H 0.140 0.860 14 C 0.013 3.987 15 N -0.781 5.781 16 Si 1.014 2.986 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.245 1.245 20 C -0.104 4.104 21 C -0.202 4.202 22 C 0.017 3.983 23 C -0.113 4.113 24 N 0.018 4.982 25 O -0.267 6.267 26 O -0.210 6.210 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.424 0.576 34 H 0.162 0.838 35 H 0.290 0.710 36 H 0.177 0.823 37 H 0.141 0.859 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 -7.445 6.324 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.040 4.040 3 O -0.208 6.208 4 C 0.192 3.808 5 C -0.298 4.298 6 C 0.197 3.803 7 N -0.224 5.224 8 C -0.145 4.145 9 C -0.239 4.239 10 N -0.153 5.153 11 N 0.094 4.906 12 C -0.516 4.516 13 H 0.157 0.843 14 C -0.208 4.208 15 N -0.405 5.405 16 Si 0.832 3.168 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.168 1.168 20 C -0.252 4.252 21 C -0.225 4.225 22 C -0.004 4.004 23 C -0.207 4.207 24 N 0.473 4.527 25 O -0.438 6.438 26 O -0.396 6.396 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.201 0.799 33 H 0.263 0.737 34 H 0.180 0.820 35 H 0.101 0.899 36 H 0.195 0.805 37 H 0.159 0.841 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.494 -7.152 5.312 13.019 hybrid contribution -0.265 -0.054 0.399 0.482 sum -9.759 -7.206 5.711 13.408 Atomic orbital electron populations 1.21811 0.91304 1.04334 1.03197 1.23434 0.97318 0.79518 1.03754 1.86451 1.16394 1.32850 1.85121 1.18338 0.84430 0.90413 0.87586 1.20816 0.90628 0.99171 1.19183 1.17882 0.89219 0.87548 0.85653 1.41191 1.12851 1.12454 1.55936 1.16992 0.87423 1.06903 1.03133 1.23701 0.95121 1.04462 1.00625 1.77961 1.10514 1.08803 1.17982 1.43935 1.07930 1.19175 1.19520 1.21520 0.83847 1.16723 1.29502 0.84290 1.28245 1.05272 0.94345 0.92938 1.69356 1.37885 1.18190 1.15041 0.84662 0.73167 0.78450 0.80513 1.18702 1.19725 1.16787 1.21898 0.88639 1.09204 1.05477 1.20928 1.00859 0.90230 1.10465 1.20673 0.88228 1.01640 0.89866 1.19774 0.89514 0.81092 1.30364 1.50335 1.03304 1.03831 0.95191 1.96216 1.80073 1.06162 1.61326 1.96229 0.91645 1.94113 1.57639 0.87418 0.91988 0.92268 0.89755 0.89166 0.79939 0.73665 0.82041 0.89851 0.80541 0.84103 0.82224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.03 0.48 5.46 71.98 0.39 0.87 16 3 O -0.30 -7.39 8.04 -71.27 -0.57 -7.96 16 4 C 0.24 6.33 6.67 22.49 0.15 6.48 16 5 C -0.27 -5.67 8.94 22.50 0.20 -5.47 16 6 C 0.31 7.74 6.27 38.24 0.24 7.98 16 7 N -0.61 -15.54 5.55 -180.90 -1.00 -16.55 16 8 C -0.04 -1.36 6.34 37.90 0.24 -1.12 16 9 C -0.07 -2.81 9.91 85.67 0.85 -1.96 16 10 N -0.32 -16.57 10.49 -56.14 -0.59 -17.16 16 11 N -0.14 -6.87 3.65 -185.65 -0.68 -7.55 16 12 C -0.38 -18.20 10.47 86.45 0.90 -17.30 16 13 H 0.14 5.84 7.94 -2.91 -0.02 5.81 16 14 C 0.01 0.61 5.68 87.18 0.50 1.10 16 15 N -0.78 -39.71 11.91 23.19 0.28 -39.44 16 16 Si 1.01 34.00 29.64 68.60 2.03 36.03 16 17 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 18 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.24 -7.59 7.11 99.48 0.71 -6.88 16 20 C -0.10 -4.13 11.48 83.17 0.95 -3.17 16 21 C -0.20 -5.67 8.13 22.42 0.18 -5.49 16 22 C 0.02 0.48 9.57 22.23 0.21 0.69 16 23 C -0.11 -3.49 6.90 36.50 0.25 -3.24 16 24 N 0.02 0.67 4.98 -46.15 -0.23 0.44 16 25 O -0.27 -10.54 19.15 3.51 0.07 -10.47 16 26 O -0.21 -8.12 17.87 10.85 0.19 -7.93 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.97 7.64 -2.39 -0.02 0.95 16 31 H 0.09 0.90 7.67 -2.39 -0.02 0.88 16 32 H 0.18 2.40 6.30 -2.91 -0.02 2.39 16 33 H 0.42 7.91 8.93 -92.70 -0.83 7.08 16 34 H 0.16 6.41 7.24 -2.91 -0.02 6.39 16 35 H 0.29 13.30 8.27 -92.71 -0.77 12.53 16 36 H 0.18 5.67 8.06 -2.91 -0.02 5.65 16 37 H 0.14 4.43 6.50 -2.91 -0.02 4.41 16 38 H 0.16 4.33 7.57 -2.91 -0.02 4.30 16 Total: -1.00 -68.14 339.28 5.62 -62.52 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.30 Total: 29.76 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 5.82 Total: -21.71 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -2.23 Total: -80.24 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.31 Total: -26.36 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Total: -68.14 5.62 -62.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771178323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.591 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds