Wall clock time and date at job start Tue Mar 31 2020 12:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48504 * 109.47126 * 270.00143 * 3 2 1 5 5 H 1.48506 * 109.47217 * 29.99965 * 3 2 1 6 6 H 1.48497 * 109.47320 * 149.99954 * 3 2 1 7 7 C 1.39948 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99927 * 207.92609 * 7 2 1 9 9 C 1.41394 * 119.99889 * 27.92150 * 7 2 1 10 10 C 1.40721 * 120.23953 * 202.26833 * 9 7 2 11 11 C 1.37616 * 119.74174 * 180.29917 * 10 9 7 12 12 C 1.38645 * 120.24630 * 359.46639 * 11 10 9 13 13 C 1.50705 * 119.74630 * 180.25892 * 12 11 10 14 14 O 1.45192 * 109.47342 * 270.25142 * 13 12 11 15 15 C 1.34799 * 117.00398 * 180.02562 * 14 13 12 16 16 O 1.21528 * 119.99633 * 359.97438 * 15 14 13 17 17 C 1.46943 * 120.00298 * 180.02562 * 15 14 13 18 18 C 1.33079 * 120.00434 * 173.86425 * 17 15 14 19 19 C 1.50666 * 119.83575 * 339.63961 * 18 17 15 20 20 C 1.53682 * 109.15709 * 117.48396 * 19 18 17 21 21 S 1.81622 * 108.98065 * 57.98378 * 20 19 18 22 22 C 1.81625 * 102.56002 * 303.38556 * 21 20 19 23 23 C 1.50650 * 119.84390 * 159.91250 * 18 17 15 24 24 C 1.38632 * 120.50244 * 0.51062 * 12 11 10 25 25 C 1.37617 * 120.24753 * 359.77378 * 24 12 11 26 26 H 0.97008 * 119.99548 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.12665 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.87577 * 179.71630 * 11 10 9 29 29 H 1.08999 * 109.46819 * 30.25377 * 13 12 11 30 30 H 1.09000 * 109.46717 * 150.24713 * 13 12 11 31 31 H 1.08004 * 119.99897 * 353.85756 * 17 15 14 32 32 H 1.08999 * 109.47565 * 237.49156 * 19 18 17 33 33 H 1.09000 * 109.47413 * 357.51401 * 19 18 17 34 34 H 1.09007 * 109.66787 * 298.07549 * 20 19 18 35 35 H 1.08993 * 109.54468 * 177.82120 * 20 19 18 36 36 H 1.08994 * 109.54749 * 296.62428 * 22 21 20 37 37 H 1.09003 * 109.61706 * 176.40224 * 22 21 20 38 38 H 1.09004 * 109.47722 * 2.49017 * 23 18 17 39 39 H 1.09005 * 109.48161 * 122.51167 * 23 18 17 40 40 H 1.08000 * 119.87475 * 179.74334 * 24 12 11 41 41 H 1.07996 * 120.12756 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 2.9936 -1.2667 0.4375 9 6 1.4244 -2.3650 -0.5745 10 6 1.8626 -3.6463 -0.1920 11 6 1.2918 -4.7614 -0.7616 12 6 0.2809 -4.6259 -1.7009 13 6 -0.3403 -5.8549 -2.3132 14 8 0.3973 -6.2262 -3.5074 15 6 -0.0330 -7.3126 -4.1795 16 8 -0.9979 -7.9327 -3.7780 17 6 0.6654 -7.7478 -5.3969 18 6 0.3189 -8.8867 -5.9919 19 6 -0.4302 -9.9394 -5.2170 20 6 -1.8083 -10.1554 -5.8621 21 16 -1.5788 -10.6421 -7.5967 22 6 -0.5955 -9.2692 -8.2653 23 6 0.6829 -9.1195 -7.4351 24 6 -0.1590 -3.3686 -2.0847 25 6 0.4014 -2.2395 -1.5325 26 1 -0.4850 0.8402 -0.0004 27 1 2.6470 -3.7540 0.5425 28 1 1.6297 -5.7457 -0.4731 29 1 -0.3068 -6.6748 -1.5958 30 1 -1.3769 -5.6449 -2.5769 31 1 1.4599 -7.1433 -5.8090 32 1 0.1326 -10.8727 -5.2343 33 1 -0.5568 -9.6103 -4.1856 34 1 -2.3840 -9.2310 -5.8158 35 1 -2.3407 -10.9435 -5.3296 36 1 -1.1741 -8.3470 -8.2132 37 1 -0.3341 -9.4775 -9.3029 38 1 1.2599 -8.2722 -7.8057 39 1 1.2783 -10.0288 -7.5176 40 1 -0.9443 -3.2748 -2.8203 41 1 0.0575 -1.2610 -1.8333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:07 Heat of formation + Delta-G solvation = -58.249583 kcal Electronic energy + Delta-G solvation = -22875.654069 eV Core-core repulsion = 19425.409572 eV Total energy + Delta-G solvation = -3450.244497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31311 -38.00322 -37.31598 -35.81005 -33.92267 -32.07499 -31.27132 -30.59582 -29.40746 -27.36923 -25.42935 -23.79806 -23.72505 -21.50803 -21.12248 -20.09153 -19.07977 -17.53696 -17.42530 -16.85695 -16.15611 -16.03877 -15.37695 -15.12153 -14.65188 -14.40571 -14.15782 -13.88977 -13.79089 -13.59140 -13.47014 -13.04363 -12.67914 -12.42683 -12.37169 -12.13107 -12.07006 -11.61031 -11.57197 -11.31823 -11.22485 -11.14422 -10.67652 -10.62345 -10.30268 -10.19422 -9.76931 -9.69328 -9.50268 -9.35051 -9.16342 -8.00205 -7.61039 -7.53347 -7.00131 -4.47079 0.83680 1.44193 2.21245 2.43826 2.92390 2.96017 2.97787 3.01228 3.03458 3.39095 3.81690 4.22779 4.38293 4.46580 4.52438 4.75719 4.78697 4.96144 5.00300 5.16647 5.27168 5.39356 5.43671 5.57184 5.63823 5.65420 5.67363 5.78528 5.99968 6.04842 6.22892 6.24050 6.28201 6.82572 6.86891 6.92829 7.12601 7.21623 7.48002 7.71468 7.91475 7.97595 8.02197 8.15049 8.48635 8.73690 8.83760 9.95899 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.002096 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.128259 B =13357.630406 C =13561.371752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.083 3.917 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.121 3.879 10 C -0.234 4.234 11 C -0.059 4.059 12 C -0.243 4.243 13 C 0.137 3.863 14 O -0.346 6.346 15 C 0.488 3.512 16 O -0.518 6.518 17 C -0.187 4.187 18 C -0.041 4.041 19 C -0.118 4.118 20 C -0.064 4.064 21 S -0.274 6.274 22 C -0.075 4.075 23 C -0.091 4.091 24 C -0.070 4.070 25 C -0.180 4.180 26 H 0.285 0.715 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -14.039 -12.884 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.119 3.881 10 C -0.254 4.254 11 C -0.077 4.077 12 C -0.244 4.244 13 C 0.066 3.934 14 O -0.262 6.262 15 C 0.335 3.665 16 O -0.411 6.411 17 C -0.206 4.206 18 C -0.042 4.042 19 C -0.156 4.156 20 C -0.212 4.212 21 S -0.048 6.048 22 C -0.223 4.223 23 C -0.130 4.130 24 C -0.088 4.088 25 C -0.199 4.199 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.256 -14.934 -13.227 19.989 hybrid contribution 0.673 1.916 0.714 2.152 sum -0.583 -13.018 -12.513 18.066 Atomic orbital electron populations 1.69890 1.08005 1.29976 1.31485 1.25992 0.94536 1.01676 0.91698 0.86373 0.80846 0.80352 0.79638 1.18972 1.20215 1.18348 1.19662 1.02890 0.92837 1.33423 0.89900 1.17645 0.89723 0.91930 0.88829 1.20908 1.06220 0.92485 1.05760 1.20384 0.94753 0.96770 0.95834 1.18621 1.06990 0.91809 1.07008 1.21716 0.93766 0.95716 0.82247 1.86821 1.56727 1.42909 1.39725 1.21486 0.82634 0.79062 0.83278 1.90677 1.27877 1.54306 1.68243 1.21966 1.03003 0.99559 0.96068 1.22533 0.93367 0.93631 0.94699 1.21623 0.93896 0.97493 1.02549 1.23409 0.99880 1.05520 0.92439 1.86806 1.71122 1.34324 1.12531 1.23355 0.97271 0.99611 1.02107 1.20954 0.97291 1.04440 0.90285 1.20487 0.98088 0.92419 0.97852 1.21102 1.01693 0.96823 1.00332 0.90432 0.88712 0.89335 0.92073 0.92040 0.83981 0.89620 0.85845 0.89274 0.87426 0.89449 0.86923 0.89231 0.88989 0.89394 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.22 11.48 55.55 0.64 -18.58 16 2 C 0.08 2.00 4.90 -17.34 -0.09 1.91 16 3 Si 0.90 17.84 29.64 -169.99 -5.04 12.80 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.84 8.99 -37.74 -0.34 -12.18 16 8 H 0.08 2.05 7.98 -52.49 -0.42 1.63 16 9 C 0.12 3.17 5.57 -106.82 -0.60 2.58 16 10 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 11 C -0.06 -1.32 9.67 -39.66 -0.38 -1.70 16 12 C -0.24 -5.35 5.54 -104.32 -0.58 -5.93 16 13 C 0.14 2.60 5.59 36.01 0.20 2.80 16 14 O -0.35 -6.25 10.21 -40.76 -0.42 -6.67 16 15 C 0.49 7.55 7.68 34.26 0.26 7.81 16 16 O -0.52 -8.52 13.20 -19.29 -0.25 -8.78 16 17 C -0.19 -2.18 9.66 -37.85 -0.37 -2.55 16 18 C -0.04 -0.41 5.04 -101.18 -0.51 -0.92 16 19 C -0.12 -1.21 5.17 -27.55 -0.14 -1.35 16 20 C -0.06 -0.64 6.49 37.51 0.24 -0.39 16 21 S -0.27 -2.61 22.23 -107.50 -2.39 -5.00 16 22 C -0.08 -0.56 6.48 37.24 0.24 -0.32 16 23 C -0.09 -0.65 5.87 -27.82 -0.16 -0.82 16 24 C -0.07 -1.62 9.67 -39.66 -0.38 -2.01 16 25 C -0.18 -4.59 8.76 -38.87 -0.34 -4.93 16 26 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 27 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.06 1.09 8.08 -51.93 -0.42 0.68 16 30 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.14 1.42 7.97 -52.48 -0.42 1.00 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.12 1.54 4.88 -52.12 -0.25 1.29 16 34 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.52 7.87 -51.93 -0.41 0.11 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.11 2.86 6.39 -52.49 -0.34 2.52 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -27.72 355.53 -11.04 -38.75 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.61 Total: 6.15 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.32 Total: -24.04 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.64 Total: -18.58 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.67 Total: -15.44 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.04 Total: 12.80 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.39 Total: -5.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.72 -11.04 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.495 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds