Wall clock time and date at job start Tue Mar 31 2020 12:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48504 * 109.47126 * 270.00143 * 3 2 1 5 5 H 1.48506 * 109.47217 * 29.99965 * 3 2 1 6 6 H 1.48497 * 109.47320 * 149.99954 * 3 2 1 7 7 C 1.39948 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99927 * 207.92609 * 7 2 1 9 9 C 1.41394 * 119.99889 * 27.92150 * 7 2 1 10 10 C 1.40721 * 120.23953 * 202.26833 * 9 7 2 11 11 C 1.37616 * 119.74174 * 180.29917 * 10 9 7 12 12 C 1.38645 * 120.24630 * 359.46639 * 11 10 9 13 13 C 1.50705 * 119.74630 * 180.25892 * 12 11 10 14 14 O 1.45192 * 109.47342 * 270.25142 * 13 12 11 15 15 C 1.34799 * 117.00398 * 180.02562 * 14 13 12 16 16 O 1.21528 * 119.99633 * 359.97438 * 15 14 13 17 17 C 1.46943 * 120.00298 * 180.02562 * 15 14 13 18 18 C 1.33079 * 120.00434 * 173.86425 * 17 15 14 19 19 C 1.50666 * 119.83575 * 339.63961 * 18 17 15 20 20 C 1.53682 * 109.15709 * 117.48396 * 19 18 17 21 21 S 1.81622 * 108.98065 * 57.98378 * 20 19 18 22 22 C 1.81625 * 102.56002 * 303.38556 * 21 20 19 23 23 C 1.50650 * 119.84390 * 159.91250 * 18 17 15 24 24 C 1.38632 * 120.50244 * 0.51062 * 12 11 10 25 25 C 1.37617 * 120.24753 * 359.77378 * 24 12 11 26 26 H 0.97008 * 119.99548 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.12665 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.87577 * 179.71630 * 11 10 9 29 29 H 1.08999 * 109.46819 * 30.25377 * 13 12 11 30 30 H 1.09000 * 109.46717 * 150.24713 * 13 12 11 31 31 H 1.08004 * 119.99897 * 353.85756 * 17 15 14 32 32 H 1.08999 * 109.47565 * 237.49156 * 19 18 17 33 33 H 1.09000 * 109.47413 * 357.51401 * 19 18 17 34 34 H 1.09007 * 109.66787 * 298.07549 * 20 19 18 35 35 H 1.08993 * 109.54468 * 177.82120 * 20 19 18 36 36 H 1.08994 * 109.54749 * 296.62428 * 22 21 20 37 37 H 1.09003 * 109.61706 * 176.40224 * 22 21 20 38 38 H 1.09004 * 109.47722 * 2.49017 * 23 18 17 39 39 H 1.09005 * 109.48161 * 122.51167 * 23 18 17 40 40 H 1.08000 * 119.87475 * 179.74334 * 24 12 11 41 41 H 1.07996 * 120.12756 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 2.9936 -1.2667 0.4375 9 6 1.4244 -2.3650 -0.5745 10 6 1.8626 -3.6463 -0.1920 11 6 1.2918 -4.7614 -0.7616 12 6 0.2809 -4.6259 -1.7009 13 6 -0.3403 -5.8549 -2.3132 14 8 0.3973 -6.2262 -3.5074 15 6 -0.0330 -7.3126 -4.1795 16 8 -0.9979 -7.9327 -3.7780 17 6 0.6654 -7.7478 -5.3969 18 6 0.3189 -8.8867 -5.9919 19 6 -0.4302 -9.9394 -5.2170 20 6 -1.8083 -10.1554 -5.8621 21 16 -1.5788 -10.6421 -7.5967 22 6 -0.5955 -9.2692 -8.2653 23 6 0.6829 -9.1195 -7.4351 24 6 -0.1590 -3.3686 -2.0847 25 6 0.4014 -2.2395 -1.5325 26 1 -0.4850 0.8402 -0.0004 27 1 2.6470 -3.7540 0.5425 28 1 1.6297 -5.7457 -0.4731 29 1 -0.3068 -6.6748 -1.5958 30 1 -1.3769 -5.6449 -2.5769 31 1 1.4599 -7.1433 -5.8090 32 1 0.1326 -10.8727 -5.2343 33 1 -0.5568 -9.6103 -4.1856 34 1 -2.3840 -9.2310 -5.8158 35 1 -2.3407 -10.9435 -5.3296 36 1 -1.1741 -8.3470 -8.2132 37 1 -0.3341 -9.4775 -9.3029 38 1 1.2599 -8.2722 -7.8057 39 1 1.2783 -10.0288 -7.5176 40 1 -0.9443 -3.2748 -2.8203 41 1 0.0575 -1.2610 -1.8333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776115440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:06 Heat of formation + Delta-G solvation = -69.108249 kcal Electronic energy + Delta-G solvation = -22876.124936 eV Core-core repulsion = 19425.409572 eV Total energy + Delta-G solvation = -3450.715364 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53684 -39.59004 -38.51891 -37.03103 -35.71927 -32.79376 -32.73546 -31.76483 -31.25984 -29.02210 -26.52264 -25.25994 -24.52397 -22.99993 -22.61860 -21.83859 -19.99147 -19.29790 -18.72616 -17.77902 -17.40324 -17.25500 -17.03413 -16.16541 -15.84289 -15.66570 -15.46879 -15.18873 -14.94807 -14.50772 -14.36509 -14.27157 -14.09044 -13.90277 -13.84435 -13.45735 -13.23063 -13.09191 -12.86318 -12.79596 -12.40968 -12.35398 -12.22769 -12.03347 -11.67447 -11.50552 -11.32740 -11.17510 -10.98315 -10.60183 -10.23191 -9.47982 -9.40571 -8.80619 -8.74972 -6.38832 -0.09742 0.73433 0.74221 1.08550 1.36700 1.44337 1.51023 1.51372 1.83461 2.00989 2.17198 2.65288 3.49535 3.58396 3.72214 3.84550 3.95605 4.05061 4.08602 4.09769 4.13180 4.24618 4.40003 4.45577 4.49962 4.52791 4.64319 4.76048 4.84581 4.85760 4.95406 4.97128 5.09539 5.21927 5.24733 5.30678 5.36516 5.62093 5.64288 5.87148 6.01828 6.11975 6.28999 6.60159 6.77740 6.84656 6.94976 8.18797 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.002096 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.128259 B =13357.630406 C =13561.371752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.044 3.956 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.497 4.497 8 H 0.081 0.919 9 C 0.091 3.909 10 C -0.251 4.251 11 C -0.061 4.061 12 C -0.238 4.238 13 C 0.144 3.856 14 O -0.360 6.360 15 C 0.483 3.517 16 O -0.534 6.534 17 C -0.208 4.208 18 C -0.018 4.018 19 C -0.120 4.120 20 C -0.060 4.060 21 S -0.293 6.293 22 C -0.070 4.070 23 C -0.088 4.088 24 C -0.075 4.075 25 C -0.204 4.204 26 H 0.294 0.706 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -15.005 -14.691 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.089 3.911 10 C -0.270 4.270 11 C -0.079 4.079 12 C -0.239 4.239 13 C 0.072 3.928 14 O -0.277 6.277 15 C 0.333 3.667 16 O -0.428 6.428 17 C -0.227 4.227 18 C -0.019 4.019 19 C -0.159 4.159 20 C -0.209 4.209 21 S -0.067 6.067 22 C -0.218 4.218 23 C -0.127 4.127 24 C -0.094 4.094 25 C -0.223 4.223 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.448 -15.924 -15.040 21.908 hybrid contribution 0.332 1.978 1.182 2.328 sum -0.117 -13.946 -13.858 19.661 Atomic orbital electron populations 1.69913 1.09453 1.31415 1.32004 1.26838 0.95234 1.04808 0.90638 0.85248 0.79416 0.75673 0.79721 1.18603 1.19008 1.17903 1.19892 1.03273 0.94134 1.35156 0.90069 1.18000 0.90521 0.93050 0.89566 1.21125 1.06894 0.92587 1.06393 1.20700 0.94368 0.97538 0.95306 1.18952 1.06045 0.92601 1.06313 1.21490 0.93590 0.94665 0.83080 1.86770 1.56943 1.44451 1.39529 1.22147 0.82798 0.78034 0.83755 1.90686 1.28726 1.54466 1.68891 1.21970 1.04678 1.01086 0.94935 1.22867 0.90898 0.92306 0.95814 1.21616 0.94523 0.98351 1.01366 1.23314 0.99454 1.04953 0.93131 1.86901 1.72068 1.35644 1.12073 1.23474 0.96703 0.98320 1.03255 1.21061 0.97532 1.06227 0.87857 1.20729 0.98286 0.92444 0.97923 1.21088 1.02799 0.96977 1.01428 0.89547 0.87958 0.86515 0.91029 0.91681 0.82139 0.87996 0.88116 0.90948 0.86837 0.89732 0.84450 0.86977 0.87359 0.87687 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.12 11.48 21.83 0.25 -40.87 16 2 C 0.04 2.14 4.90 85.26 0.42 2.56 16 3 Si 0.98 36.86 29.64 68.60 2.03 38.89 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.50 -26.39 8.99 23.46 0.21 -26.18 16 8 H 0.08 4.16 7.98 -2.91 -0.02 4.13 16 9 C 0.09 4.92 5.57 -21.29 -0.12 4.80 16 10 C -0.25 -12.33 9.80 22.73 0.22 -12.10 16 11 C -0.06 -2.70 9.67 22.22 0.21 -2.48 16 12 C -0.24 -10.39 5.54 -19.67 -0.11 -10.50 16 13 C 0.14 5.32 5.59 71.24 0.40 5.72 16 14 O -0.36 -12.69 10.21 -57.11 -0.58 -13.28 16 15 C 0.48 14.51 7.68 70.10 0.54 15.05 16 16 O -0.53 -17.34 13.20 19.74 0.26 -17.08 16 17 C -0.21 -4.46 9.66 23.40 0.23 -4.23 16 18 C -0.02 -0.31 5.04 -17.63 -0.09 -0.40 16 19 C -0.12 -2.28 5.17 30.07 0.16 -2.13 16 20 C -0.06 -1.13 6.49 72.21 0.47 -0.66 16 21 S -0.29 -4.99 22.23 -56.49 -1.26 -6.24 16 22 C -0.07 -0.81 6.48 72.04 0.47 -0.34 16 23 C -0.09 -0.94 5.87 29.89 0.18 -0.76 16 24 C -0.08 -3.54 9.67 22.22 0.21 -3.33 16 25 C -0.20 -10.72 8.76 22.73 0.20 -10.52 16 26 H 0.29 13.40 8.30 -92.70 -0.77 12.63 16 27 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 28 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 30 H 0.06 2.33 8.08 -2.39 -0.02 2.32 16 31 H 0.16 2.80 7.97 -2.91 -0.02 2.78 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.45 4.88 -5.38 -0.03 2.43 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.79 7.87 -2.39 -0.02 0.77 16 39 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.10 5.21 6.39 -2.91 -0.02 5.19 16 Total: -1.00 -61.45 355.53 5.31 -56.14 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 1.02 Total: 27.94 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 3.59 Total: -45.51 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.25 Total: -40.87 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.32 Total: -30.35 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -1.26 Total: -6.24 kcal Total: -61.45 5.31 -56.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.970 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds