Wall clock time and date at job start Tue Mar 31 2020 11:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42900 * 114.00543 * 2 1 4 4 C 1.50695 * 109.47551 * 180.02562 * 3 2 1 5 5 N 1.29950 * 126.28947 * 89.97156 * 4 3 2 6 6 O 1.21293 * 110.25191 * 180.02562 * 5 4 3 7 7 C 1.33636 * 109.81654 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.55526 * 179.97438 * 7 6 5 9 9 O 1.45203 * 109.46894 * 270.02208 * 8 7 6 10 10 C 1.34777 * 117.00150 * 180.02562 * 9 8 7 11 11 O 1.21510 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.47500 * 120.00451 * 180.02562 * 10 9 8 13 13 C 1.40074 * 119.89873 * 359.71753 * 12 10 9 14 14 C 1.36294 * 120.10415 * 180.27519 * 13 12 10 15 15 C 1.40901 * 119.89358 * 0.02562 * 14 13 12 16 16 C 1.41093 * 120.09753 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00293 * 205.10042 * 16 15 14 18 18 C 1.40254 * 120.00011 * 25.09923 * 16 15 14 19 19 N 1.30632 * 119.99450 * 18.02571 * 18 16 15 20 20 Si 1.86794 * 120.00062 * 198.03071 * 18 16 15 21 21 H 1.48501 * 109.47524 * 94.52655 * 20 18 16 22 22 H 1.48507 * 109.46926 * 214.52855 * 20 18 16 23 23 H 1.48505 * 109.47187 * 334.52151 * 20 18 16 24 24 C 1.40897 * 119.80901 * 359.97438 * 15 14 13 25 25 C 1.36305 * 119.89326 * 0.02562 * 24 15 14 26 26 N 1.31132 * 106.89492 * 0.22323 * 7 6 5 27 27 H 1.09001 * 109.47908 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47252 * 299.99979 * 1 2 3 29 29 H 1.09006 * 109.47348 * 59.99607 * 1 2 3 30 30 H 1.08995 * 109.47012 * 59.99680 * 3 2 1 31 31 H 1.08998 * 109.47065 * 300.00528 * 3 2 1 32 32 H 1.09004 * 109.47443 * 150.02333 * 8 7 6 33 33 H 1.08994 * 109.47585 * 30.01781 * 8 7 6 34 34 H 1.08003 * 119.94528 * 0.25686 * 13 12 10 35 35 H 1.07997 * 120.05427 * 180.02562 * 14 13 12 36 36 H 0.97008 * 119.99642 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.05681 * 179.97438 * 24 15 14 38 38 H 1.07996 * 119.94883 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2787 1.1253 -1.0484 6 8 5.4409 1.0328 -0.7138 7 6 5.5293 1.0254 0.6196 8 6 6.7926 0.9241 1.4349 9 8 7.0895 -0.4731 1.6958 10 6 8.1953 -0.7389 2.4190 11 8 8.8925 0.1720 2.8201 12 6 8.5600 -2.1355 2.7227 13 6 7.7522 -3.1837 2.2635 14 6 8.0822 -4.4754 2.5464 15 6 9.2376 -4.7556 3.3027 16 6 9.5829 -6.0912 3.5985 17 1 10.1838 -6.3138 4.4679 18 6 9.1458 -7.1300 2.7637 19 7 8.7352 -6.8653 1.5521 20 14 9.1506 -8.8919 3.3842 21 1 7.8106 -9.2288 3.9284 22 1 9.4750 -9.8105 2.2634 23 1 10.1702 -9.0371 4.4541 24 6 10.0471 -3.6981 3.7626 25 6 9.7094 -2.4093 3.4748 26 7 4.3060 1.1175 1.0831 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 6.6581 1.4497 2.3803 33 1 7.6180 1.3740 0.8834 34 1 6.8664 -2.9678 1.6845 35 1 7.4591 -5.2830 2.1916 36 1 8.4325 -7.5837 0.9748 37 1 10.9334 -3.9083 4.3429 38 1 10.3291 -1.5980 3.8272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777129303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:31 Heat of formation + Delta-G solvation = -38.502477 kcal Electronic energy + Delta-G solvation = -24787.624448 eV Core-core repulsion = 20791.943035 eV Total energy + Delta-G solvation = -3995.681413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.84215 -39.80542 -38.39422 -37.56554 -36.17947 -35.78208 -34.00707 -33.27633 -30.48721 -29.56516 -29.08747 -28.27484 -26.29350 -26.06392 -23.81047 -22.60125 -21.67737 -21.01824 -20.15411 -18.40781 -17.94832 -17.61004 -17.03981 -16.74461 -16.62505 -16.08192 -15.93008 -15.82000 -15.47989 -14.62380 -14.05347 -13.55489 -13.49658 -13.14815 -12.99308 -12.88677 -12.58215 -12.43968 -12.23034 -12.16609 -11.96807 -11.62935 -11.48946 -11.36099 -11.30945 -11.03641 -10.77103 -10.50837 -10.39189 -10.19170 -10.17592 -9.67716 -9.56134 -9.43116 -7.80998 -7.70023 -7.14735 -4.72894 0.76687 1.72442 1.95376 2.42102 2.83229 2.90857 2.94256 2.98948 3.07026 3.37151 3.52709 3.67337 3.71022 3.92191 4.40427 4.54685 4.70518 4.87846 4.95492 4.98899 5.12228 5.15151 5.32539 5.41276 5.46177 5.68996 5.78134 6.15408 6.20300 6.60944 6.68880 6.75295 6.79462 6.92658 7.02243 7.36329 7.59973 7.71679 7.78224 7.88327 7.95233 8.30204 8.51105 8.54767 8.63988 9.76574 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.002741 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.587447 B =10212.735830 C =11840.452907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.158 3.842 4 C 0.165 3.835 5 N -0.360 5.360 6 O 0.098 5.902 7 C 0.192 3.808 8 C 0.162 3.838 9 O -0.354 6.354 10 C 0.522 3.478 11 O -0.547 6.547 12 C -0.276 4.276 13 C -0.041 4.041 14 C -0.184 4.184 15 C 0.132 3.868 16 C -0.431 4.431 17 H 0.089 0.911 18 C 0.072 3.928 19 N -0.760 5.760 20 Si 0.917 3.083 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.239 4.239 25 C -0.015 4.015 26 N -0.448 5.448 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.290 0.710 37 H 0.103 0.897 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 10.347 -3.260 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.080 3.920 4 C -0.108 4.108 5 N -0.065 5.065 6 O 0.034 5.966 7 C -0.029 4.029 8 C 0.085 3.915 9 O -0.271 6.271 10 C 0.375 3.625 11 O -0.440 6.440 12 C -0.278 4.278 13 C -0.060 4.060 14 C -0.203 4.203 15 C 0.128 3.872 16 C -0.458 4.458 17 H 0.107 0.893 18 C -0.151 4.151 19 N -0.382 5.382 20 Si 0.740 3.260 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.258 4.258 25 C -0.034 4.034 26 N -0.184 5.184 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.627 10.375 -3.891 16.061 hybrid contribution -0.097 -0.498 0.077 0.514 sum -11.724 9.877 -3.814 15.797 Atomic orbital electron populations 1.22821 0.79567 1.03592 1.00334 1.87980 1.20649 1.25896 1.95522 1.20382 0.82330 0.86396 1.02933 1.25362 0.99260 1.02474 0.83718 1.74646 0.89610 1.18430 1.23789 1.85335 1.22341 1.64137 1.24805 1.28246 0.96160 0.96662 0.81861 1.20817 0.88147 0.84348 0.98159 1.86670 1.46178 1.25397 1.68881 1.21609 0.76194 0.90993 0.73735 1.90725 1.52235 1.47686 1.53371 1.18112 1.04511 0.86824 1.18374 1.20643 0.96712 0.92801 0.95869 1.20996 0.98778 0.94976 1.05544 1.17866 0.89080 0.92791 0.87419 1.19977 1.26426 0.90816 1.08573 0.89321 1.26184 0.92266 1.02763 0.93883 1.69741 1.26732 1.36320 1.05441 0.86141 0.80164 0.79892 0.79818 1.18832 1.19840 1.18094 1.20689 1.02040 0.92124 1.10927 1.20340 0.93302 0.96242 0.93466 1.71898 0.99553 1.17827 1.29117 0.88896 0.93427 0.93631 0.89601 0.90175 0.86600 0.87434 0.88111 0.86114 0.89883 0.87928 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.60 10.69 -35.23 -0.38 -4.97 16 3 C 0.16 1.63 6.56 36.00 0.24 1.86 16 4 C 0.16 2.29 7.85 -156.37 -1.23 1.07 16 5 N -0.36 -5.28 12.16 30.90 0.38 -4.91 16 6 O 0.10 1.41 11.31 18.12 0.20 1.62 16 7 C 0.19 2.73 8.15 -13.06 -0.11 2.62 16 8 C 0.16 2.23 6.10 36.00 0.22 2.45 16 9 O -0.35 -6.49 9.43 -40.70 -0.38 -6.87 16 10 C 0.52 10.84 7.89 34.51 0.27 11.11 16 11 O -0.55 -11.70 16.11 -19.27 -0.31 -12.01 16 12 C -0.28 -6.27 5.89 -104.75 -0.62 -6.88 16 13 C -0.04 -0.95 9.55 -39.59 -0.38 -1.33 16 14 C -0.18 -4.52 8.63 -39.27 -0.34 -4.86 16 15 C 0.13 3.27 5.57 -106.80 -0.59 2.68 16 16 C -0.43 -10.36 9.04 -37.74 -0.34 -10.70 16 17 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.63 5.13 -17.30 -0.09 1.54 16 19 N -0.76 -17.88 10.99 55.56 0.61 -17.27 16 20 Si 0.92 16.76 29.60 -169.99 -5.03 11.73 16 21 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 24 C -0.24 -5.53 9.73 -39.27 -0.38 -5.92 16 25 C -0.01 -0.33 9.52 -39.59 -0.38 -0.71 16 26 N -0.45 -6.74 11.55 -9.87 -0.11 -6.85 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.10 2.19 7.59 -52.48 -0.40 1.79 16 35 H 0.12 3.02 6.19 -52.49 -0.33 2.69 16 36 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.10 2.19 7.63 -52.49 -0.40 1.79 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -29.11 346.43 -6.47 -35.58 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.05 Total: 4.45 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.61 Total: -5.71 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.87 Total: -29.03 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.87 Total: -22.24 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.11 -6.47 -35.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777129303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.925 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds