Wall clock time and date at job start Tue Mar 31 2020 12:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50709 * 119.99933 * 2 1 4 4 S 1.80992 * 109.47099 * 114.99923 * 3 2 1 5 5 C 1.76197 * 100.00171 * 180.02562 * 4 3 2 6 6 C 1.39062 * 120.18504 * 359.97438 * 5 4 3 7 7 C 1.37893 * 120.06283 * 180.02562 * 6 5 4 8 8 C 1.38676 * 120.45152 * 0.02562 * 7 6 5 9 9 C 1.37711 * 120.37518 * 0.02562 * 8 7 6 10 10 C 1.39813 * 119.92875 * 359.97438 * 9 8 7 11 11 C 1.47235 * 120.22212 * 179.97438 * 10 9 8 12 12 O 1.21534 * 119.99969 * 178.35147 * 11 10 9 13 13 O 1.34780 * 120.00039 * 358.35268 * 11 10 9 14 14 C 1.45196 * 117.00193 * 184.73643 * 13 11 10 15 15 C 1.52997 * 109.47272 * 183.86134 * 14 13 11 16 16 C 1.50694 * 115.55510 * 306.11585 * 15 14 13 17 17 H 1.07996 * 120.00593 * 143.69025 * 16 15 14 18 18 C 1.37877 * 119.99932 * 323.69844 * 16 15 14 19 19 N 1.31521 * 119.99835 * 350.64050 * 18 16 15 20 20 Si 1.86800 * 120.00412 * 170.64452 * 18 16 15 21 21 H 1.48497 * 109.47366 * 89.99805 * 20 18 16 22 22 H 1.48500 * 109.47152 * 209.99700 * 20 18 16 23 23 H 1.48501 * 109.46744 * 329.99632 * 20 18 16 24 24 C 1.53005 * 117.49841 * 160.44342 * 15 14 13 25 25 C 1.53008 * 117.49731 * 91.78756 * 15 14 13 26 26 H 1.07992 * 120.00287 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99979 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99979 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47170 * 354.99624 * 3 2 1 30 30 H 1.08998 * 109.46359 * 234.99995 * 3 2 1 31 31 H 1.07999 * 119.96908 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.77867 * 179.72446 * 7 6 5 33 33 H 1.07999 * 119.81264 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.03550 * 180.02562 * 9 8 7 35 35 H 1.08994 * 109.47333 * 303.86480 * 14 13 11 36 36 H 1.09008 * 109.47298 * 63.86551 * 14 13 11 37 37 H 0.97002 * 119.99844 * 185.04931 * 19 18 16 38 38 H 1.09000 * 117.49899 * 0.02562 * 24 15 14 39 39 H 1.08999 * 117.49775 * 145.02483 * 24 15 14 40 40 H 1.09002 * 117.49576 * 214.98193 * 25 15 14 41 41 H 1.08997 * 117.49771 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 16 2.9897 1.4671 1.5465 5 6 3.7519 3.0338 1.2842 6 6 3.5219 3.7346 0.1052 7 6 4.1202 4.9603 -0.0977 8 6 4.9542 5.5038 0.8678 9 6 5.1956 4.8251 2.0415 10 6 4.5972 3.5812 2.2637 11 6 4.8512 2.8498 3.5161 12 8 4.3054 1.7828 3.7180 13 8 5.6889 3.3635 4.4385 14 6 5.9747 2.5408 5.6003 15 6 6.8592 3.3225 6.5737 16 6 8.1276 3.8880 5.9887 17 1 8.4935 4.8487 6.3196 18 6 8.8210 3.1790 5.0309 19 7 8.4842 1.9368 4.7600 20 14 10.2389 3.9824 4.1179 21 1 11.5040 3.7403 4.8568 22 1 10.3427 3.4017 2.7552 23 1 9.9971 5.4441 4.0161 24 6 6.9025 2.8464 8.0271 25 6 6.1608 4.1357 7.6655 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 -0.0896 30 1 2.7556 1.3250 -0.8418 31 1 2.8741 3.3185 -0.6521 32 1 3.9420 5.4986 -1.0169 33 1 5.4171 6.4647 0.6983 34 1 5.8457 5.2537 2.7899 35 1 5.0408 2.2719 6.0937 36 1 6.4932 1.6351 5.2855 37 1 9.0166 1.4141 4.1401 38 1 6.3012 1.9760 8.2897 39 1 7.8483 2.9426 8.5602 40 1 6.6191 5.0796 7.9608 41 1 5.0714 4.1141 7.6900 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777325305.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:47 Heat of formation + Delta-G solvation = -7.171472 kcal Electronic energy + Delta-G solvation = -23848.169196 eV Core-core repulsion = 20400.139612 eV Total energy + Delta-G solvation = -3448.029584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85577 -38.37931 -36.68706 -35.09616 -34.91576 -32.15709 -31.38995 -31.14302 -27.53759 -26.70423 -25.40473 -23.76710 -22.66937 -21.26326 -20.76780 -19.81804 -19.18187 -17.76511 -17.01966 -16.61658 -15.81330 -15.69073 -15.38445 -15.08583 -14.73396 -14.59592 -14.23750 -14.19941 -13.74065 -13.54271 -13.11371 -12.88394 -12.41873 -12.15518 -11.93601 -11.67191 -11.51424 -11.39718 -11.26497 -10.98238 -10.84185 -10.62452 -10.49440 -10.34091 -9.92058 -9.70181 -9.57006 -9.47497 -9.08187 -9.01144 -8.98210 -8.76376 -8.13206 -7.28742 -6.04374 -4.09728 0.84372 1.27430 1.35573 2.27630 2.60105 3.03076 3.26363 3.34690 3.37654 3.50591 3.92338 4.35967 4.55154 4.74695 4.78577 4.91388 4.99430 5.12882 5.15786 5.37434 5.40120 5.44252 5.54200 5.62354 5.64302 5.94373 6.03578 6.16181 6.23141 6.31555 6.33920 6.44377 6.44460 6.48708 6.63548 6.65326 6.80642 6.84101 6.97578 7.25518 7.41141 7.50045 7.89560 8.33339 8.59098 8.86051 9.50798 10.97120 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.004055 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.282402 B = 6903.102252 C = 7735.320412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.136 4.136 3 C -0.144 4.144 4 S 0.016 5.984 5 C -0.050 4.050 6 C -0.155 4.155 7 C -0.073 4.073 8 C -0.145 4.145 9 C -0.038 4.038 10 C -0.107 4.107 11 C 0.494 3.506 12 O -0.500 6.500 13 O -0.316 6.316 14 C 0.116 3.884 15 C 0.049 3.951 16 C -0.483 4.483 17 H 0.062 0.938 18 C 0.076 3.924 19 N -0.883 5.883 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.192 4.192 25 C -0.209 4.209 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.149 0.851 35 H 0.028 0.972 36 H 0.114 0.886 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 2.098 -11.485 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.155 4.155 3 C -0.291 4.291 4 S 0.266 5.734 5 C -0.164 4.164 6 C -0.179 4.179 7 C -0.093 4.093 8 C -0.166 4.166 9 C -0.057 4.057 10 C -0.115 4.115 11 C 0.339 3.661 12 O -0.393 6.393 13 O -0.230 6.230 14 C 0.043 3.957 15 C 0.048 3.952 16 C -0.520 4.520 17 H 0.080 0.920 18 C -0.127 4.127 19 N -0.520 5.520 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.230 4.230 25 C -0.247 4.247 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.047 0.953 36 H 0.132 0.868 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.083 0.740 -10.600 16.091 hybrid contribution 0.770 1.180 -1.434 2.011 sum -11.313 1.920 -12.034 16.628 Atomic orbital electron populations 1.23886 0.95597 1.02175 1.00089 1.22371 0.95755 0.96814 1.00544 1.23268 1.03110 0.99545 1.03149 1.87444 1.51918 1.16266 1.17784 1.22214 0.98797 0.99236 0.96197 1.21056 1.03736 0.96637 0.96473 1.21209 0.94892 0.94508 0.98649 1.21156 1.00289 1.00975 0.94177 1.21623 0.94985 0.92000 0.97104 1.18923 1.02305 0.96913 0.93333 1.20866 0.77492 0.83638 0.84139 1.90677 1.49097 1.22296 1.77238 1.86540 1.57671 1.47610 1.31223 1.22867 0.95394 0.95364 0.82041 1.18875 0.94919 0.96252 0.85145 1.20417 1.06133 1.04577 1.20918 0.91977 1.24924 0.97271 0.94695 0.95846 1.69774 1.38721 1.07822 1.35656 0.86560 0.82067 0.79905 0.79380 1.20684 1.21030 1.19585 1.22964 1.00846 0.95946 1.03227 1.22966 0.96943 0.95215 1.09554 0.87880 0.88413 0.86443 0.89441 0.88892 0.85212 0.85496 0.85130 0.83347 0.95346 0.86833 0.92676 0.91459 0.89775 0.90308 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 14.32 29.02 0.42 -1.12 16 2 C -0.14 -1.37 9.52 -36.02 -0.34 -1.72 16 3 C -0.14 -1.59 4.61 36.01 0.17 -1.42 16 4 S 0.02 0.26 18.96 -107.50 -2.04 -1.78 16 5 C -0.05 -0.81 6.16 -38.43 -0.24 -1.05 16 6 C -0.15 -1.95 9.17 -39.40 -0.36 -2.32 16 7 C -0.07 -0.82 10.02 -39.55 -0.40 -1.22 16 8 C -0.14 -1.84 10.02 -39.61 -0.40 -2.24 16 9 C -0.04 -0.61 9.61 -39.19 -0.38 -0.99 16 10 C -0.11 -1.98 5.89 -104.81 -0.62 -2.60 16 11 C 0.49 10.98 7.87 34.39 0.27 11.25 16 12 O -0.50 -11.71 13.49 -19.29 -0.26 -11.97 16 13 O -0.32 -7.62 9.15 -40.71 -0.37 -8.00 16 14 C 0.12 2.90 4.62 37.16 0.17 3.07 16 15 C 0.05 1.21 2.11 -155.66 -0.33 0.88 16 16 C -0.48 -12.98 8.76 -34.44 -0.30 -13.28 16 17 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 18 C 0.08 2.03 5.23 -17.82 -0.09 1.93 16 19 N -0.88 -24.50 10.76 55.43 0.60 -23.90 16 20 Si 0.89 20.79 29.55 -169.99 -5.02 15.77 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.19 -4.30 9.96 -26.69 -0.27 -4.57 16 25 C -0.21 -4.56 9.92 -26.69 -0.26 -4.82 16 26 H 0.10 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.09 0.86 7.19 -51.92 -0.37 0.48 16 30 H 0.09 0.93 7.54 -51.92 -0.39 0.54 16 31 H 0.13 1.29 5.50 -52.49 -0.29 1.00 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.15 2.49 7.61 -52.49 -0.40 2.09 16 35 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 36 H 0.11 3.12 6.02 -51.92 -0.31 2.81 16 37 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -29.96 361.64 -10.13 -40.09 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.52 Total: 4.55 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.96 Total: -20.21 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.60 Total: -23.90 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.63 Total: -19.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.04 Total: -1.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.96 -10.13 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777325305.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.917 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds