Wall clock time and date at job start Tue Mar 31 2020 12:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30242 * 126.10419 * 2 1 4 4 N 1.39875 * 110.08096 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.45745 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47473 * 89.97290 * 5 4 3 7 7 O 1.21279 * 119.99848 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00244 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00144 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.46990 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00437 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99558 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00524 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99744 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46825 * 90.00349 * 14 12 10 16 16 H 1.48503 * 109.47404 * 210.00067 * 14 12 10 17 17 H 1.48496 * 109.47425 * 330.00270 * 14 12 10 18 18 C 1.37033 * 109.08179 * 359.97438 * 4 3 2 19 19 C 1.39288 * 133.85325 * 179.97438 * 18 4 3 20 20 C 1.36589 * 119.85148 * 179.74818 * 19 18 4 21 21 C 1.38965 * 120.81537 * 0.55596 * 20 19 18 22 22 N 1.48026 * 119.68447 * 179.71572 * 21 20 19 23 23 O 1.21794 * 119.99552 * 179.73025 * 22 21 20 24 24 O 1.21798 * 119.99606 * 359.44528 * 22 21 20 25 25 C 1.36460 * 120.62798 * 359.43535 * 21 20 19 26 26 C 1.39943 * 119.63770 * 0.27844 * 25 21 20 27 27 H 1.08999 * 109.47188 * 269.99881 * 1 2 3 28 28 H 1.08992 * 109.47522 * 30.00256 * 1 2 3 29 29 H 1.09007 * 109.47015 * 150.00583 * 1 2 3 30 30 H 1.09004 * 109.47021 * 209.96948 * 5 4 3 31 31 H 1.09003 * 109.47248 * 329.96896 * 5 4 3 32 32 H 0.96996 * 120.00017 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46770 * 300.00275 * 9 8 6 34 34 H 1.08998 * 109.46726 * 59.99703 * 9 8 6 35 35 H 0.96998 * 120.00124 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.07004 * 0.04984 * 19 18 4 37 37 H 1.08005 * 119.58874 * 180.29037 * 20 19 18 38 38 H 1.08001 * 120.18331 * 180.24891 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6662 -0.0006 5 6 4.7651 1.5786 -0.0002 6 6 5.1581 1.8910 1.4207 7 8 4.5412 1.4003 2.3423 8 7 6.1945 2.7166 1.6673 9 6 6.5762 3.0207 3.0486 10 6 7.7554 3.9591 3.0489 11 1 8.1779 4.2957 2.1138 12 6 8.2940 4.3889 4.2431 13 7 7.7792 3.9794 5.3820 14 14 9.7561 5.5515 4.2435 15 1 9.2720 6.9555 4.2424 16 1 10.5784 5.3124 5.4567 17 1 10.5801 5.3111 3.0317 18 6 3.6920 -0.7022 -0.0004 19 6 4.7465 -1.6122 -0.0012 20 6 4.4872 -2.9533 0.0045 21 6 3.1803 -3.4257 -0.0005 22 7 2.9281 -4.8843 -0.0005 23 8 1.7850 -5.3045 0.0002 24 8 3.8638 -5.6640 -0.0064 25 6 2.1273 -2.5577 0.0004 26 6 2.3670 -1.1790 0.0005 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 5.6037 1.1086 -0.5141 31 1 4.4952 2.5013 -0.5138 32 1 6.6877 3.1093 0.9302 33 1 5.7374 3.4904 3.5623 34 1 6.8464 2.0982 3.5624 35 1 8.1584 4.2815 6.2221 36 1 5.7668 -1.2582 -0.0014 37 1 5.3081 -3.6551 0.0086 38 1 1.1145 -2.9328 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779770428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:28 Heat of formation + Delta-G solvation = 45.491118 kcal Electronic energy + Delta-G solvation = -25307.227751 eV Core-core repulsion = 21347.481325 eV Total energy + Delta-G solvation = -3959.746426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.37117 -41.71222 -39.09996 -37.74594 -36.62864 -34.68543 -34.31687 -32.55650 -31.55947 -30.81332 -30.19302 -27.86112 -26.83662 -25.33339 -23.69160 -22.85951 -22.12590 -20.57496 -20.03922 -19.32531 -18.76084 -17.79665 -17.59483 -17.32490 -16.69519 -16.09763 -15.42386 -15.23287 -15.19558 -15.01449 -14.56022 -14.28465 -13.70747 -13.66513 -13.42562 -13.10112 -13.01161 -12.62601 -12.31461 -12.11598 -11.94673 -11.78827 -11.61203 -11.32042 -11.21689 -11.11804 -11.07265 -10.99805 -10.60173 -10.45147 -9.59471 -9.53792 -9.35024 -8.90429 -8.45686 -8.16211 -6.29750 -4.38298 -0.20132 0.37913 1.26634 1.30158 1.81380 2.03564 2.90629 3.04586 3.15381 3.21734 3.23828 3.68001 3.80701 3.92640 4.08751 4.23087 4.35778 4.50744 4.68711 4.75848 4.88520 4.93585 5.06723 5.08478 5.12452 5.24816 5.31259 5.43203 5.49836 5.62139 5.81947 6.01430 6.30864 6.42418 7.07606 7.12133 7.19302 7.31486 7.47018 7.58287 7.80083 8.31120 8.55031 8.78473 9.28698 10.80254 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.002690 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.624558 B =10406.457014 C =11352.623484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.116 3.884 3 N -0.229 5.229 4 N -0.368 5.368 5 C 0.112 3.888 6 C 0.478 3.522 7 O -0.537 6.537 8 N -0.704 5.704 9 C 0.251 3.749 10 C -0.548 4.548 11 H 0.064 0.936 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.906 3.094 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.181 3.819 19 C -0.125 4.125 20 C -0.025 4.025 21 C -0.089 4.089 22 N 0.040 4.960 23 O -0.174 6.174 24 O -0.168 6.168 25 C 0.043 3.957 26 C -0.184 4.184 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.393 0.607 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.268 0.732 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 -9.405 -15.682 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 N -0.042 5.042 4 N -0.151 5.151 5 C -0.013 4.013 6 C 0.260 3.740 7 O -0.415 6.415 8 N -0.353 5.353 9 C 0.131 3.869 10 C -0.586 4.586 11 H 0.082 0.918 12 C -0.140 4.140 13 N -0.521 5.521 14 Si 0.733 3.267 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.062 3.938 19 C -0.147 4.147 20 C -0.047 4.047 21 C -0.174 4.174 22 N 0.557 4.443 23 O -0.387 6.387 24 O -0.382 6.382 25 C 0.021 3.979 26 C -0.193 4.193 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.226 0.774 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.167 -7.590 -14.770 19.471 hybrid contribution 1.215 -0.208 -0.055 1.234 sum -8.952 -7.798 -14.824 18.992 Atomic orbital electron populations 1.20339 0.84811 1.04244 1.04196 1.23612 0.97015 0.87583 0.97987 1.76753 0.86483 1.22973 1.17960 1.47868 1.04145 1.02037 1.61032 1.21727 0.86016 0.95520 0.98008 1.20571 0.82069 0.81149 0.90209 1.90744 1.53088 1.52219 1.45434 1.46448 1.30795 1.45746 1.12314 1.19174 0.95586 0.96448 0.75706 1.21172 1.15000 1.29250 0.93166 0.91757 1.24963 0.97474 0.96360 0.95161 1.69968 1.40946 1.43552 0.97607 0.86384 0.81766 0.80767 0.77823 1.20373 1.20900 1.19683 1.19049 0.95456 0.85116 0.94213 1.19793 0.98353 0.90371 1.06187 1.20385 0.94890 0.95686 0.93727 1.20355 0.96144 0.79640 1.21272 1.43471 1.00404 1.03401 0.97057 1.94517 1.07750 1.82177 1.54231 1.94529 1.36561 1.53226 1.53928 1.20074 0.99544 0.90060 0.88197 1.19486 0.92355 0.92995 1.14494 0.89257 0.89696 0.89663 0.86051 0.85529 0.77393 0.95382 0.95364 0.92270 0.83345 0.82412 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.48 36.01 0.38 -0.17 16 2 C 0.12 1.34 7.43 -80.19 -0.60 0.75 16 3 N -0.23 -3.23 12.40 34.84 0.43 -2.79 16 4 N -0.37 -5.04 3.14 -59.88 -0.19 -5.23 16 5 C 0.11 1.34 6.85 -5.19 -0.04 1.30 16 6 C 0.48 8.51 7.90 -10.99 -0.09 8.42 16 7 O -0.54 -12.34 16.43 5.56 0.09 -12.25 16 8 N -0.70 -13.16 5.55 -61.47 -0.34 -13.50 16 9 C 0.25 6.28 5.43 -5.19 -0.03 6.25 16 10 C -0.55 -14.08 9.28 -34.44 -0.32 -14.40 16 11 H 0.06 1.52 7.60 -52.49 -0.40 1.13 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.88 -25.31 13.29 55.43 0.74 -24.57 16 14 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C 0.18 2.32 6.87 -84.18 -0.58 1.75 16 19 C -0.12 -1.34 9.97 -39.79 -0.40 -1.74 16 20 C -0.03 -0.26 9.47 -39.91 -0.38 -0.64 16 21 C -0.09 -1.02 6.81 -80.31 -0.55 -1.57 16 22 N 0.04 0.52 4.45 33.78 0.15 0.67 16 23 O -0.17 -2.33 18.40 -29.46 -0.54 -2.87 16 24 O -0.17 -2.30 18.42 -29.46 -0.54 -2.84 16 25 C 0.04 0.45 9.56 -39.58 -0.38 0.07 16 26 C -0.18 -2.19 6.33 -105.21 -0.67 -2.86 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.39 5.91 8.32 -40.82 -0.34 5.57 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.16 1.36 7.58 -52.48 -0.40 0.96 16 38 H 0.16 1.28 7.56 -52.49 -0.40 0.88 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -34.96 349.17 -7.74 -42.70 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.05 Total: 1.57 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.73 Total: -1.21 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.79 Total: -45.42 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.99 Total: -17.96 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.96 -7.74 -42.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779770428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.192 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds