Wall clock time and date at job start Tue Mar 31 2020 12:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30242 * 126.10419 * 2 1 4 4 N 1.39875 * 110.08096 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.45745 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47473 * 89.97290 * 5 4 3 7 7 O 1.21279 * 119.99848 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00244 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00144 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.46990 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00437 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99558 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00524 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99744 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46825 * 90.00349 * 14 12 10 16 16 H 1.48503 * 109.47404 * 210.00067 * 14 12 10 17 17 H 1.48496 * 109.47425 * 330.00270 * 14 12 10 18 18 C 1.37033 * 109.08179 * 359.97438 * 4 3 2 19 19 C 1.39288 * 133.85325 * 179.97438 * 18 4 3 20 20 C 1.36589 * 119.85148 * 179.74818 * 19 18 4 21 21 C 1.38965 * 120.81537 * 0.55596 * 20 19 18 22 22 N 1.48026 * 119.68447 * 179.71572 * 21 20 19 23 23 O 1.21794 * 119.99552 * 179.73025 * 22 21 20 24 24 O 1.21798 * 119.99606 * 359.44528 * 22 21 20 25 25 C 1.36460 * 120.62798 * 359.43535 * 21 20 19 26 26 C 1.39943 * 119.63770 * 0.27844 * 25 21 20 27 27 H 1.08999 * 109.47188 * 269.99881 * 1 2 3 28 28 H 1.08992 * 109.47522 * 30.00256 * 1 2 3 29 29 H 1.09007 * 109.47015 * 150.00583 * 1 2 3 30 30 H 1.09004 * 109.47021 * 209.96948 * 5 4 3 31 31 H 1.09003 * 109.47248 * 329.96896 * 5 4 3 32 32 H 0.96996 * 120.00017 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46770 * 300.00275 * 9 8 6 34 34 H 1.08998 * 109.46726 * 59.99703 * 9 8 6 35 35 H 0.96998 * 120.00124 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.07004 * 0.04984 * 19 18 4 37 37 H 1.08005 * 119.58874 * 180.29037 * 20 19 18 38 38 H 1.08001 * 120.18331 * 180.24891 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6662 -0.0006 5 6 4.7651 1.5786 -0.0002 6 6 5.1581 1.8910 1.4207 7 8 4.5412 1.4003 2.3423 8 7 6.1945 2.7166 1.6673 9 6 6.5762 3.0207 3.0486 10 6 7.7554 3.9591 3.0489 11 1 8.1779 4.2957 2.1138 12 6 8.2940 4.3889 4.2431 13 7 7.7792 3.9794 5.3820 14 14 9.7561 5.5515 4.2435 15 1 9.2720 6.9555 4.2424 16 1 10.5784 5.3124 5.4567 17 1 10.5801 5.3111 3.0317 18 6 3.6920 -0.7022 -0.0004 19 6 4.7465 -1.6122 -0.0012 20 6 4.4872 -2.9533 0.0045 21 6 3.1803 -3.4257 -0.0005 22 7 2.9281 -4.8843 -0.0005 23 8 1.7850 -5.3045 0.0002 24 8 3.8638 -5.6640 -0.0064 25 6 2.1273 -2.5577 0.0004 26 6 2.3670 -1.1790 0.0005 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 5.6037 1.1086 -0.5141 31 1 4.4952 2.5013 -0.5138 32 1 6.6877 3.1093 0.9302 33 1 5.7374 3.4904 3.5623 34 1 6.8464 2.0982 3.5624 35 1 8.1584 4.2815 6.2221 36 1 5.7668 -1.2582 -0.0014 37 1 5.3081 -3.6551 0.0086 38 1 1.1145 -2.9328 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779770428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:27 Heat of formation + Delta-G solvation = 21.750882 kcal Electronic energy + Delta-G solvation = -25308.257205 eV Core-core repulsion = 21347.481325 eV Total energy + Delta-G solvation = -3960.775880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.32559 -42.64430 -40.58670 -38.64784 -37.64181 -36.30305 -35.42677 -34.44723 -32.50792 -31.67175 -31.12142 -29.40695 -27.98979 -26.44392 -24.64156 -24.49911 -23.16148 -21.81626 -21.18925 -20.26899 -19.76690 -19.29369 -18.58262 -18.33576 -17.83064 -17.60733 -16.93164 -16.54311 -16.36353 -16.14730 -15.71106 -15.46176 -14.72334 -14.62669 -14.48717 -14.22721 -14.09868 -14.01919 -13.53660 -13.20430 -13.12960 -12.97319 -12.82538 -12.74286 -12.59761 -12.28552 -12.26274 -12.26040 -11.95546 -11.53916 -11.50394 -11.02168 -10.85404 -10.25573 -9.97661 -9.40415 -8.33262 -6.50365 -1.15794 -0.47250 0.30527 0.35902 0.91760 1.17487 1.42205 1.43676 1.51102 1.55099 2.15169 2.27828 2.47029 2.91419 3.02425 3.14614 3.26853 3.54025 3.64514 3.74526 3.87309 3.98582 4.06260 4.13674 4.40009 4.59307 4.64748 4.74061 4.80269 4.90338 4.99495 5.02977 5.16125 5.27590 5.38147 5.39369 5.50307 5.62004 5.78494 6.30094 6.54708 6.59759 6.73099 7.17715 7.33556 8.78733 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.002690 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.624558 B =10406.457014 C =11352.623484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.123 3.877 3 N -0.270 5.270 4 N -0.382 5.382 5 C 0.124 3.876 6 C 0.477 3.523 7 O -0.595 6.595 8 N -0.696 5.696 9 C 0.269 3.731 10 C -0.555 4.555 11 H 0.089 0.911 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.984 3.016 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.252 1.252 18 C 0.165 3.835 19 C -0.129 4.129 20 C -0.021 4.021 21 C -0.100 4.100 22 N 0.042 4.958 23 O -0.179 6.179 24 O -0.187 6.187 25 C 0.054 3.946 26 C -0.198 4.198 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.415 0.585 33 H -0.016 1.016 34 H -0.012 1.012 35 H 0.268 0.732 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 -8.982 -18.025 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 N -0.082 5.082 4 N -0.165 5.165 5 C 0.000 4.000 6 C 0.263 3.737 7 O -0.476 6.476 8 N -0.347 5.347 9 C 0.146 3.854 10 C -0.592 4.592 11 H 0.107 0.893 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.807 3.193 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.175 1.175 18 C 0.045 3.955 19 C -0.151 4.151 20 C -0.043 4.043 21 C -0.186 4.186 22 N 0.555 4.445 23 O -0.392 6.392 24 O -0.398 6.398 25 C 0.032 3.968 26 C -0.207 4.207 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.186 0.814 31 H 0.173 0.827 32 H 0.251 0.749 33 H 0.002 0.998 34 H 0.006 0.994 35 H 0.077 0.923 36 H 0.187 0.813 37 H 0.192 0.808 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.569 -7.185 -17.186 20.942 hybrid contribution 0.914 -0.398 0.685 1.209 sum -8.654 -7.582 -16.502 20.117 Atomic orbital electron populations 1.20576 0.81996 1.06099 1.05036 1.24324 0.98652 0.86869 0.95677 1.76715 0.87068 1.24352 1.20100 1.47990 1.04314 1.02432 1.61776 1.21846 0.87358 0.97471 0.93328 1.21656 0.80366 0.79195 0.92511 1.90716 1.54675 1.54043 1.48145 1.46088 1.31736 1.46443 1.10443 1.18537 0.94101 0.94233 0.78555 1.21616 1.14719 1.28699 0.94204 0.89286 1.26073 1.00715 0.98172 0.94691 1.70138 1.42994 1.45455 0.98508 0.85166 0.77727 0.78117 0.78284 1.19749 1.21239 1.17541 1.19466 0.96527 0.85263 0.94219 1.20045 0.99003 0.90092 1.05940 1.20620 0.95070 0.95947 0.92683 1.20516 0.97029 0.78743 1.22300 1.43654 1.00191 1.03958 0.96679 1.94501 1.07866 1.82591 1.54267 1.94524 1.36601 1.53829 1.54830 1.20271 1.00498 0.89376 0.86646 1.19712 0.92397 0.93563 1.15049 0.88696 0.88778 0.86921 0.81408 0.82659 0.74861 0.99831 0.99359 0.92276 0.81288 0.80762 0.80178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.48 71.24 0.75 -0.22 16 2 C 0.12 2.69 7.43 44.79 0.33 3.02 16 3 N -0.27 -7.38 12.40 -43.69 -0.54 -7.92 16 4 N -0.38 -9.96 3.14 -343.35 -1.08 -11.04 16 5 C 0.12 2.68 6.85 85.63 0.59 3.27 16 6 C 0.48 16.90 7.90 87.66 0.69 17.59 16 7 O -0.59 -28.25 16.43 -3.03 -0.05 -28.30 16 8 N -0.70 -25.87 5.55 -466.79 -2.59 -28.46 16 9 C 0.27 13.93 5.43 85.63 0.46 14.40 16 10 C -0.55 -28.50 9.28 25.60 0.24 -28.26 16 11 H 0.09 4.03 7.60 -2.91 -0.02 4.01 16 12 C 0.00 0.17 5.46 84.65 0.46 0.63 16 13 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 14 Si 0.98 40.69 29.54 68.60 2.03 42.71 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 18 C 0.16 4.00 6.87 39.21 0.27 4.27 16 19 C -0.13 -2.56 9.97 22.14 0.22 -2.34 16 20 C -0.02 -0.42 9.47 22.06 0.21 -0.21 16 21 C -0.10 -2.18 6.81 36.13 0.25 -1.93 16 22 N 0.04 1.04 4.45 -47.03 -0.21 0.83 16 23 O -0.18 -4.59 18.40 18.89 0.35 -4.24 16 24 O -0.19 -5.00 18.42 18.89 0.35 -4.65 16 25 C 0.05 1.04 9.56 22.27 0.21 1.25 16 26 C -0.20 -4.45 6.33 -20.24 -0.13 -4.58 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.17 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.41 11.66 8.32 -92.71 -0.77 10.89 16 33 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.18 2.71 7.58 -2.91 -0.02 2.69 16 38 H 0.18 2.51 7.56 -2.91 -0.02 2.49 16 Total: -1.00 -80.39 349.17 3.44 -76.95 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.35 Total: 11.98 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 4.55 Total: 6.90 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.13 Total: -101.35 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: 0.65 Total: -37.19 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -80.39 3.44 -76.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779770428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.696 kcal (2) G-P(sol) polarization free energy of solvation -80.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds