Wall clock time and date at job start Tue Mar 31 2020 12:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35725 * 117.00382 * 2 1 4 4 C 1.38892 * 119.93560 * 0.28141 * 3 2 1 5 5 C 1.37720 * 120.16520 * 180.27652 * 4 3 2 6 6 C 1.39808 * 120.02799 * 359.71814 * 5 4 3 7 7 C 1.47487 * 120.06396 * 179.97438 * 6 5 4 8 8 O 1.21504 * 119.99892 * 180.02562 * 7 6 5 9 9 O 1.34749 * 119.99758 * 0.03246 * 7 6 5 10 10 C 1.45206 * 116.99348 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47332 * 30.00127 * 10 9 7 12 12 C 1.53001 * 109.47034 * 269.99476 * 10 9 7 13 13 C 1.50705 * 109.46647 * 149.99803 * 10 9 7 14 14 H 1.08006 * 120.00289 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00004 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00019 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 120.00460 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46604 * 59.99604 * 17 15 13 19 19 H 1.48493 * 109.47503 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47027 * 300.00003 * 17 15 13 21 21 C 1.39713 * 119.87382 * 0.02562 * 6 5 4 22 22 C 1.38267 * 119.83089 * 359.97438 * 21 6 5 23 23 N 1.40372 * 120.01340 * 180.02562 * 22 21 6 24 24 C 1.35040 * 127.38359 * 359.96601 * 23 22 21 25 25 N 1.30749 * 107.27303 * 180.02562 * 24 23 22 26 26 N 1.28424 * 110.64591 * 359.97438 * 25 24 23 27 27 N 1.28940 * 110.19430 * 0.02562 * 26 25 24 28 28 H 1.08993 * 109.47415 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46786 * 299.99934 * 1 2 3 30 30 H 1.08996 * 109.47478 * 59.99345 * 1 2 3 31 31 H 1.08003 * 119.91863 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.98479 * 179.74264 * 5 4 3 33 33 H 1.08997 * 109.46770 * 180.02562 * 12 10 9 34 34 H 1.09003 * 109.46833 * 300.00168 * 12 10 9 35 35 H 1.08995 * 109.46888 * 60.00238 * 12 10 9 36 36 H 0.96994 * 120.00344 * 179.97438 * 16 15 13 37 37 H 1.07995 * 120.08206 * 179.97438 * 21 6 5 38 38 H 1.07993 * 126.35899 * 0.08212 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2875 2.3733 0.0059 5 6 1.9079 3.6029 0.0002 6 6 3.3037 3.6822 -0.0056 7 6 3.9689 4.9986 -0.0123 8 8 5.1820 5.0662 -0.0179 9 8 3.2312 6.1262 -0.0122 10 6 3.9531 7.3861 -0.0184 11 1 4.9037 7.2576 -0.5358 12 6 4.2125 7.8323 1.4219 13 6 3.1322 8.4318 -0.7282 14 1 2.1649 8.1751 -1.1344 15 6 3.6164 9.7159 -0.8600 16 7 4.7945 10.0284 -0.3658 17 14 2.5993 11.0121 -1.7404 18 1 1.3040 11.1875 -1.0356 19 1 3.3374 12.3005 -1.7467 20 1 2.3476 10.5784 -3.1381 21 6 4.0673 2.5122 -0.0062 22 6 3.4387 1.2807 -0.0004 23 7 4.2021 0.1027 -0.0004 24 6 5.5484 -0.0018 -0.0062 25 7 5.8389 -1.2766 -0.0043 26 7 4.7678 -1.9850 0.0028 27 7 3.7289 -1.2213 0.0054 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2091 2.3141 0.0101 32 1 1.3158 4.5062 0.0006 33 1 4.7540 8.7783 1.4172 34 1 3.2617 7.9608 1.9392 35 1 4.8061 7.0760 1.9352 36 1 5.1353 10.9317 -0.4589 37 1 5.1457 2.5696 -0.0111 38 1 6.2540 0.8158 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781803301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:56 Heat of formation + Delta-G solvation = 33.559585 kcal Electronic energy + Delta-G solvation = -25701.567926 eV Core-core repulsion = 21741.304110 eV Total energy + Delta-G solvation = -3960.263816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33918 -40.84695 -39.59757 -37.86513 -35.86005 -35.35665 -33.36697 -32.43884 -30.99500 -30.69123 -29.57479 -27.89953 -25.44664 -25.29121 -24.45960 -23.18335 -22.35412 -21.33985 -20.13855 -19.10086 -18.06094 -17.07248 -16.93139 -16.88696 -16.42519 -16.09395 -15.90083 -15.68558 -15.18001 -14.71929 -14.64322 -14.40665 -13.54712 -13.49136 -13.29007 -12.98803 -12.55905 -12.45847 -12.32455 -12.02144 -11.91059 -11.56645 -11.48353 -11.27094 -11.17127 -11.13921 -10.94668 -10.63323 -10.50230 -10.38113 -9.98936 -9.69386 -9.36437 -9.04272 -8.61584 -8.56295 -6.27825 -4.35662 0.09998 0.48404 1.30204 1.50970 2.10245 2.65085 2.67067 3.19446 3.21002 3.24782 3.34678 3.55015 3.77639 4.05637 4.24383 4.31057 4.40274 4.64911 4.77000 4.79500 4.81778 4.83875 5.05395 5.12646 5.14676 5.19223 5.25200 5.66163 5.80868 5.92846 5.98178 6.14263 6.51186 6.77273 6.78084 6.78859 6.98964 7.46838 7.60440 7.78918 8.01279 8.24247 8.42520 8.73572 9.30132 10.79520 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.002912 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.504010 B = 9612.221349 C =10582.797235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.286 6.286 3 C 0.172 3.828 4 C -0.205 4.205 5 C -0.006 4.006 6 C -0.126 4.126 7 C 0.500 3.500 8 O -0.514 6.514 9 O -0.349 6.349 10 C 0.217 3.783 11 H 0.049 0.951 12 C -0.156 4.156 13 C -0.525 4.525 14 H 0.069 0.931 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.913 3.087 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.024 4.024 22 C 0.077 3.923 23 N -0.315 5.315 24 C 0.220 3.780 25 N -0.331 5.331 26 N -0.050 5.050 27 N -0.053 5.053 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.156 0.844 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 -15.852 1.514 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.197 6.197 3 C 0.123 3.877 4 C -0.224 4.224 5 C -0.025 4.025 6 C -0.129 4.129 7 C 0.344 3.656 8 O -0.405 6.405 9 O -0.265 6.265 10 C 0.165 3.835 11 H 0.067 0.933 12 C -0.214 4.214 13 C -0.562 4.562 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.525 5.525 17 Si 0.739 3.261 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.045 4.045 22 C -0.017 4.017 23 N -0.105 5.105 24 C -0.077 4.077 25 N -0.180 5.180 26 N -0.045 5.045 27 N -0.038 5.038 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.168 0.832 32 H 0.176 0.824 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.174 0.826 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.296 -17.266 1.538 18.807 hybrid contribution -0.491 1.996 -0.396 2.093 sum -7.787 -15.270 1.142 17.179 Atomic orbital electron populations 1.23250 0.77459 1.04789 1.01865 1.86305 1.21984 1.24806 1.86582 1.18857 0.89619 0.86106 0.93149 1.21227 1.00998 0.90802 1.09400 1.21609 0.93491 0.98482 0.88916 1.19066 0.93545 0.91152 1.09095 1.20616 0.85690 0.85575 0.73687 1.90795 1.14990 1.88259 1.46468 1.86532 1.42418 1.15999 1.81526 1.20719 0.93210 0.74630 0.94904 0.93322 1.22182 1.00054 1.02705 0.96432 1.20959 1.04787 0.93533 1.36967 0.91277 1.24882 0.95294 0.98203 0.95498 1.69876 1.17431 1.20649 1.44582 0.86318 0.79843 0.79897 0.79996 1.19912 1.20986 1.19943 1.20753 1.01412 0.87873 0.94427 1.16515 0.87380 0.82672 1.15083 1.48875 1.05939 1.06744 1.48931 1.27513 0.84554 0.98353 0.97256 1.74472 1.21503 1.00385 1.21680 1.78067 0.92596 1.23208 1.10670 1.82894 1.18177 0.82502 1.20273 0.87560 0.91991 0.91982 0.83156 0.82432 0.88104 0.94321 0.96414 0.92211 0.82614 0.74409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.29 -2.93 8.65 -18.88 -0.16 -3.09 16 3 C 0.17 1.82 6.71 -38.86 -0.26 1.56 16 4 C -0.21 -1.84 9.01 -39.53 -0.36 -2.20 16 5 C -0.01 -0.07 9.60 -39.18 -0.38 -0.45 16 6 C -0.13 -1.73 5.87 -104.99 -0.62 -2.34 16 7 C 0.50 9.37 7.86 34.50 0.27 9.64 16 8 O -0.51 -10.86 15.60 -19.27 -0.30 -11.16 16 9 O -0.35 -7.45 9.10 -40.62 -0.37 -7.82 16 10 C 0.22 5.44 2.56 -27.88 -0.07 5.37 16 11 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 12 C -0.16 -3.71 9.33 37.16 0.35 -3.37 16 13 C -0.52 -13.85 8.90 -34.44 -0.31 -14.16 16 14 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 17 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 C -0.02 -0.28 9.03 -39.02 -0.35 -0.63 16 22 C 0.08 0.88 6.71 -83.45 -0.56 0.32 16 23 N -0.31 -3.83 3.86 -11.68 -0.05 -3.88 16 24 C 0.22 2.33 12.15 -90.17 -1.10 1.23 16 25 N -0.33 -4.40 12.15 29.64 0.36 -4.04 16 26 N -0.05 -0.74 13.39 60.35 0.81 0.07 16 27 N -0.05 -0.75 12.08 60.35 0.73 -0.02 16 28 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.28 7.64 -51.92 -0.40 -0.12 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.15 0.89 6.27 -52.48 -0.33 0.56 16 32 H 0.16 1.68 7.60 -52.49 -0.40 1.28 16 33 H 0.10 2.59 6.07 -51.93 -0.32 2.27 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.16 1.59 6.46 -52.49 -0.34 1.25 16 38 H 0.24 1.42 7.19 -52.49 -0.38 1.04 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -32.48 336.45 -4.52 -37.01 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -3.74 Total: -1.36 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.48 Total: -2.33 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 2.48 Total: -31.41 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.83 Total: -22.07 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.48 -4.52 -37.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781803301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.565 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds