Wall clock time and date at job start Tue Mar 31 2020 12:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35727 * 117.00082 * 2 1 4 4 C 1.38889 * 119.93542 * 359.97438 * 3 2 1 5 5 C 1.37725 * 120.16509 * 180.02562 * 4 3 2 6 6 C 1.39808 * 120.02802 * 0.26511 * 5 4 3 7 7 C 1.47473 * 120.06632 * 179.74220 * 6 5 4 8 8 O 1.21508 * 120.00167 * 179.97438 * 7 6 5 9 9 O 1.34753 * 119.99839 * 359.97438 * 7 6 5 10 10 C 1.45200 * 116.99631 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47280 * 330.00125 * 10 9 7 12 12 C 1.52995 * 109.47115 * 90.00667 * 10 9 7 13 13 C 1.50700 * 109.46958 * 210.00122 * 10 9 7 14 14 H 1.08003 * 120.00253 * 0.02562 * 13 10 9 15 15 C 1.37882 * 120.00122 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99787 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00004 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46773 * 120.00178 * 17 15 13 20 20 H 1.48499 * 109.46766 * 240.00143 * 17 15 13 21 21 C 1.39715 * 119.86927 * 359.48284 * 6 5 4 22 22 C 1.38267 * 119.83713 * 0.51198 * 21 6 5 23 23 N 1.40367 * 120.01790 * 179.76391 * 22 21 6 24 24 C 1.35035 * 127.38479 * 359.68990 * 23 22 21 25 25 N 1.30746 * 107.27958 * 179.89541 * 24 23 22 26 26 N 1.28426 * 110.64156 * 0.38077 * 25 24 23 27 27 N 1.28952 * 110.19503 * 359.76176 * 26 25 24 28 28 H 1.08993 * 109.47195 * 299.99981 * 1 2 3 29 29 H 1.09002 * 109.47338 * 59.99952 * 1 2 3 30 30 H 1.09001 * 109.47504 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.91537 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.98320 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47518 * 179.97438 * 12 10 9 34 34 H 1.09006 * 109.46792 * 299.99430 * 12 10 9 35 35 H 1.08997 * 109.47489 * 59.99586 * 12 10 9 36 36 H 0.97004 * 119.99483 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.08388 * 180.25824 * 21 6 5 38 38 H 1.07998 * 126.35615 * 0.02789 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2874 2.3733 -0.0005 5 6 1.9078 3.6029 -0.0011 6 6 3.3036 3.6824 -0.0067 7 6 3.9687 4.9986 -0.0130 8 8 5.1819 5.0662 -0.0174 9 8 3.2310 6.1262 -0.0139 10 6 3.9529 7.3861 -0.0197 11 1 4.9073 7.2604 0.4916 12 6 4.2018 7.8246 -1.4641 13 6 3.1371 8.4356 0.6903 14 1 2.1728 8.1811 1.1049 15 6 3.6218 9.7208 0.8108 16 7 4.7958 10.0308 0.3056 17 14 2.6103 11.0219 1.6903 18 1 1.3366 10.4227 2.1632 19 1 3.3746 11.5407 2.8531 20 1 2.3161 12.1365 0.7541 21 6 4.0672 2.5123 -0.0008 22 6 3.4387 1.2807 -0.0002 23 7 4.2021 0.1028 0.0007 24 6 5.5484 -0.0017 -0.0047 25 7 5.8390 -1.2764 0.0008 26 7 4.7679 -1.9849 0.0014 27 7 3.7289 -1.2212 0.0014 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2090 2.3140 -0.0005 32 1 1.3157 4.5062 -0.0019 33 1 4.7432 8.7705 -1.4685 34 1 4.7919 7.0655 -1.9777 35 1 3.2474 7.9503 -1.9753 36 1 5.1366 10.9351 0.3900 37 1 5.1457 2.5697 -0.0009 38 1 6.2540 0.8159 -0.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781803302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:58 Heat of formation + Delta-G solvation = 14.114784 kcal Electronic energy + Delta-G solvation = -25702.669081 eV Core-core repulsion = 21741.562075 eV Total energy + Delta-G solvation = -3961.107006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.29495 -41.81660 -40.95138 -38.79926 -37.49841 -36.31841 -35.28755 -33.40074 -32.12183 -31.70460 -31.16088 -28.53006 -27.42963 -26.24547 -25.52380 -24.29184 -23.40033 -22.68940 -21.49942 -20.16412 -19.06653 -18.67273 -18.24068 -17.81587 -17.37410 -17.31267 -16.92234 -16.82162 -16.66649 -16.37973 -15.51132 -15.18534 -14.97478 -14.47328 -14.33773 -14.14617 -14.04644 -13.81102 -13.54958 -13.21446 -13.08916 -12.94542 -12.79806 -12.71426 -12.37702 -12.28356 -12.16885 -12.12663 -12.10541 -11.60911 -11.59253 -11.51856 -10.96162 -10.58463 -10.20956 -9.48006 -8.26842 -6.42955 -0.78951 -0.48548 0.39697 0.60658 1.14118 1.44843 1.45017 1.48123 1.58577 1.86769 2.01395 2.41806 2.46255 2.92442 3.04902 3.26245 3.51869 3.57158 3.69851 3.84964 3.95307 4.06268 4.30068 4.35215 4.37540 4.41958 4.52820 4.68401 4.76098 4.81850 4.86284 4.92875 5.04515 5.10952 5.19227 5.30622 5.51229 5.65363 5.92372 6.06840 6.08608 6.61563 6.90771 7.26699 7.28493 8.80911 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.002912 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.892081 B = 9613.716341 C =10583.406520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.304 6.304 3 C 0.180 3.820 4 C -0.188 4.188 5 C 0.001 3.999 6 C -0.150 4.150 7 C 0.498 3.502 8 O -0.547 6.547 9 O -0.351 6.351 10 C 0.220 3.780 11 H 0.011 0.989 12 C -0.144 4.144 13 C -0.544 4.544 14 H 0.072 0.928 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.981 3.019 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.274 1.274 21 C -0.011 4.011 22 C 0.064 3.936 23 N -0.316 5.316 24 C 0.231 3.769 25 N -0.353 5.353 26 N -0.070 5.070 27 N -0.069 5.069 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.189 0.811 32 H 0.163 0.837 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.048 0.952 36 H 0.270 0.730 37 H 0.166 0.834 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 -16.207 -1.172 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.130 3.870 4 C -0.207 4.207 5 C -0.017 4.017 6 C -0.152 4.152 7 C 0.345 3.655 8 O -0.440 6.440 9 O -0.268 6.268 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.202 4.202 13 C -0.582 4.582 14 H 0.090 0.910 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.199 1.199 21 C -0.032 4.032 22 C -0.028 4.028 23 N -0.106 5.106 24 C -0.065 4.065 25 N -0.202 5.202 26 N -0.065 5.065 27 N -0.054 5.054 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.206 0.794 32 H 0.180 0.820 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.183 0.817 38 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -9.557 -17.659 -1.193 20.115 hybrid contribution 0.177 1.968 0.301 1.999 sum -9.380 -15.691 -0.892 18.303 Atomic orbital electron populations 1.23616 0.75041 1.06323 1.03530 1.86312 1.24536 1.24653 1.85937 1.19083 0.89491 0.86915 0.91538 1.21482 1.02585 0.89036 1.07550 1.21692 0.92321 0.99693 0.88033 1.18724 0.94652 0.88719 1.13091 1.21415 0.85545 0.86303 0.72267 1.90771 1.16421 1.88652 1.48116 1.86501 1.42158 1.15829 1.82274 1.20381 0.91782 0.76275 0.94912 0.97123 1.22005 1.00333 1.01795 0.96078 1.21333 1.05405 0.94158 1.37291 0.90990 1.25800 0.96287 1.00288 0.95991 1.70024 1.19092 1.21091 1.45303 0.85164 0.78632 0.77863 0.77933 1.18412 1.20496 1.19950 1.20714 1.01858 0.87297 0.93348 1.16574 0.88009 0.82201 1.16067 1.48895 1.06496 1.06415 1.48829 1.28279 0.84598 0.98486 0.95128 1.74419 1.21534 1.01559 1.22687 1.78051 0.93078 1.23939 1.11437 1.82839 1.18368 0.83268 1.20970 0.90274 0.90219 0.86357 0.79439 0.81964 0.90180 0.95618 0.93339 0.92079 0.81659 0.70535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.30 -5.42 8.65 -90.49 -0.78 -6.20 16 3 C 0.18 3.34 6.71 22.74 0.15 3.49 16 4 C -0.19 -2.74 9.01 22.30 0.20 -2.54 16 5 C 0.00 0.03 9.60 22.53 0.22 0.24 16 6 C -0.15 -3.95 5.87 -20.11 -0.12 -4.07 16 7 C 0.50 18.84 7.86 70.26 0.55 19.39 16 8 O -0.55 -23.72 15.60 19.81 0.31 -23.41 16 9 O -0.35 -15.18 9.10 -56.63 -0.52 -15.69 16 10 C 0.22 11.27 2.56 29.85 0.08 11.34 16 11 H 0.01 0.63 7.16 -2.39 -0.02 0.62 16 12 C -0.14 -6.99 9.33 71.98 0.67 -6.32 16 13 C -0.54 -28.98 8.90 25.60 0.23 -28.75 16 14 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 15 C 0.02 0.84 5.30 84.66 0.45 1.29 16 16 N -0.92 -50.64 11.32 21.45 0.24 -50.40 16 17 Si 0.98 40.79 29.54 68.60 2.03 42.81 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 C -0.01 -0.25 9.03 22.63 0.20 -0.04 16 22 C 0.06 1.36 6.71 38.09 0.26 1.62 16 23 N -0.32 -7.26 3.86 -190.87 -0.74 -8.00 16 24 C 0.23 4.55 12.15 180.19 2.19 6.74 16 25 N -0.35 -9.10 12.15 -60.15 -0.73 -9.83 16 26 N -0.07 -2.02 13.39 37.02 0.50 -1.53 16 27 N -0.07 -1.87 12.08 37.02 0.45 -1.42 16 28 H 0.08 0.39 7.65 -2.39 -0.02 0.37 16 29 H 0.08 0.38 7.65 -2.39 -0.02 0.36 16 30 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.19 1.30 6.27 -2.91 -0.02 1.28 16 32 H 0.16 3.12 7.60 -2.91 -0.02 3.10 16 33 H 0.08 4.22 6.07 -2.39 -0.01 4.21 16 34 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.17 3.18 6.46 -2.91 -0.02 3.16 16 38 H 0.28 2.69 7.19 -2.91 -0.02 2.66 16 Total: -1.00 -72.28 336.44 8.07 -64.21 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.12 Total: 5.88 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.19 Total: 3.58 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -0.28 Total: -71.18 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.99 Total: -45.31 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -72.28 8.07 -64.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781803302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.327 kcal (2) G-P(sol) polarization free energy of solvation -72.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds