Wall clock time and date at job start Tue Mar 31 2020 12:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34765 * 124.17692 * 2 1 4 4 O 1.21227 * 127.16168 * 359.92006 * 3 2 1 5 5 C 1.51590 * 105.68270 * 179.74141 * 3 2 1 6 6 N 1.47308 * 103.59406 * 0.33031 * 5 3 2 7 7 N 1.40097 * 126.69166 * 179.97438 * 6 5 3 8 8 C 1.34773 * 120.00173 * 254.99225 * 7 6 5 9 9 O 1.21583 * 120.00508 * 179.72317 * 8 7 6 10 10 N 1.34781 * 120.00263 * 359.72024 * 8 7 6 11 11 C 1.39238 * 120.00233 * 175.71805 * 10 8 7 12 12 C 1.39479 * 119.83167 * 215.01380 * 11 10 8 13 13 C 1.36382 * 120.16741 * 179.71463 * 12 11 10 14 14 C 1.40863 * 119.82395 * 0.58349 * 13 12 11 15 15 C 1.41160 * 120.16276 * 179.67552 * 14 13 12 16 16 H 1.08000 * 120.00186 * 214.80656 * 15 14 13 17 17 C 1.39898 * 119.99600 * 34.80161 * 15 14 13 18 18 N 1.30878 * 120.00219 * 355.54914 * 17 15 14 19 19 Si 1.86799 * 119.99566 * 175.55166 * 17 15 14 20 20 H 1.48500 * 109.47319 * 59.99990 * 19 17 15 21 21 H 1.48502 * 109.47230 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47088 * 299.99590 * 19 17 15 23 23 C 1.40870 * 119.67775 * 359.68930 * 14 13 12 24 24 C 1.36373 * 119.82604 * 0.02562 * 23 14 13 25 25 C 1.33796 * 124.17660 * 179.97438 * 2 1 3 26 26 O 1.21530 * 123.77439 * 0.04602 * 25 2 1 27 27 H 1.09007 * 109.46794 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46893 * 300.01621 * 1 2 3 29 29 H 1.08998 * 109.46922 * 60.01984 * 1 2 3 30 30 H 1.09003 * 110.69246 * 241.75661 * 5 3 2 31 31 H 1.09006 * 110.50481 * 118.81834 * 5 3 2 32 32 H 0.96997 * 119.99727 * 74.71011 * 7 6 5 33 33 H 0.97003 * 119.99302 * 355.71234 * 10 8 7 34 34 H 1.07999 * 119.91782 * 359.97438 * 12 11 10 35 35 H 1.08004 * 120.08331 * 180.25059 * 13 12 11 36 36 H 0.96999 * 119.99836 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.08335 * 179.97438 * 23 14 13 38 38 H 1.07994 * 119.91380 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8342 2.2635 -0.0013 5 6 3.6597 0.6341 0.0066 6 7 3.5339 -0.8336 0.0016 7 7 4.5817 -1.7636 0.0042 8 6 4.8908 -2.4336 -1.1236 9 8 5.8034 -3.2370 -1.1227 10 7 4.1883 -2.2132 -2.2525 11 6 4.5634 -2.8379 -3.4391 12 6 4.4127 -2.1684 -4.6534 13 6 4.7832 -2.7715 -5.8191 14 6 5.3077 -4.0786 -5.7957 15 6 5.6871 -4.7123 -6.9987 16 1 5.5501 -5.7773 -7.1146 17 6 6.2404 -3.9606 -8.0408 18 7 6.3262 -2.6590 -7.9350 19 14 6.8568 -4.8149 -9.5834 20 1 5.7357 -5.5473 -10.2253 21 1 7.3935 -3.8032 -10.5287 22 1 7.9320 -5.7735 -9.2223 23 6 5.4515 -4.7505 -4.5660 24 6 5.0821 -4.1322 -3.4079 25 6 2.2166 -1.1069 0.0005 26 8 1.7604 -2.2333 0.0002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5141 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 4.1747 0.9718 0.9060 31 1 4.1812 0.9774 -0.8869 32 1 5.0872 -1.9222 0.8166 33 1 3.4214 -1.6194 -2.2383 34 1 4.0055 -1.1682 -4.6701 35 1 4.6697 -2.2503 -6.7582 36 1 6.7095 -2.1378 -8.6577 37 1 5.8526 -5.7530 -4.5405 38 1 5.1921 -4.6459 -2.4644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782133951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:55 Heat of formation + Delta-G solvation = 9.000927 kcal Electronic energy + Delta-G solvation = -26062.992854 eV Core-core repulsion = 22101.664094 eV Total energy + Delta-G solvation = -3961.328760 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.75777 -40.12002 -38.96858 -37.54379 -36.65847 -35.92953 -34.52862 -33.04515 -32.49214 -29.60324 -28.85093 -27.90806 -27.58342 -25.04073 -23.32775 -22.20160 -21.40000 -20.88860 -19.93860 -18.76320 -18.47743 -17.40334 -17.29163 -17.14295 -16.57195 -15.93729 -15.82970 -15.14184 -14.94837 -14.64089 -14.61158 -14.42485 -14.28251 -13.91448 -13.17163 -13.08387 -12.98116 -12.70852 -12.17249 -11.75166 -11.53012 -11.38787 -11.17179 -11.10146 -10.81989 -10.75148 -10.44329 -10.25076 -10.02168 -9.76288 -9.53042 -9.42984 -9.22838 -8.96064 -7.56879 -6.89017 -6.62675 -4.35263 0.87451 1.15535 2.15217 2.51521 2.59841 3.07435 3.08462 3.09537 3.12607 3.30339 3.43383 3.55077 3.97764 4.37039 4.51016 4.53975 4.69231 4.80934 4.91867 5.04365 5.22374 5.36816 5.63091 6.13779 6.31931 6.47016 6.51426 6.67330 6.69421 6.84386 6.98087 7.07658 7.18304 7.29053 7.58686 7.62763 7.79413 7.94245 8.06941 8.26187 8.32994 8.60905 8.72560 8.91908 8.98410 10.28492 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.002950 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.285723 B = 9488.075325 C = 9958.234610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.573 5.573 3 C 0.531 3.469 4 O -0.461 6.461 5 C 0.063 3.937 6 N -0.436 5.436 7 N -0.492 5.492 8 C 0.706 3.294 9 O -0.551 6.551 10 N -0.650 5.650 11 C 0.013 3.987 12 C -0.119 4.119 13 C -0.140 4.140 14 C 0.101 3.899 15 C -0.461 4.461 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.812 5.812 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.203 4.203 24 C -0.084 4.084 25 C 0.697 3.303 26 O -0.516 6.516 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.431 0.569 33 H 0.390 0.610 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 9.556 14.304 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.321 5.321 3 C 0.317 3.683 4 O -0.330 6.330 5 C -0.063 4.063 6 N -0.269 5.269 7 N -0.251 5.251 8 C 0.407 3.593 9 O -0.422 6.422 10 N -0.295 5.295 11 C -0.079 4.079 12 C -0.139 4.139 13 C -0.160 4.160 14 C 0.098 3.902 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.145 4.145 18 N -0.439 5.439 19 Si 0.741 3.259 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.223 4.223 24 C -0.104 4.104 25 C 0.398 3.602 26 O -0.385 6.385 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.277 0.723 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.469 9.054 13.980 18.254 hybrid contribution 0.225 0.118 -0.221 0.336 sum -7.245 9.172 13.759 18.054 Atomic orbital electron populations 1.21949 0.74223 1.05520 1.03776 1.46271 1.09760 1.07437 1.68663 1.20675 0.88209 0.84804 0.74621 1.90853 1.78623 1.17734 1.45782 1.22867 0.96393 0.79145 1.07863 1.45902 0.99933 1.02170 1.78850 1.44451 1.28434 1.38553 1.13694 1.16088 0.82080 0.81098 0.80052 1.91037 1.32766 1.36780 1.81663 1.42042 1.30951 1.49170 1.07381 1.17081 1.14251 0.93721 0.82842 1.20254 1.03887 0.97643 0.92159 1.21171 1.00794 0.97321 0.96709 1.17721 0.88193 0.92126 0.92110 1.19476 1.36303 0.95694 0.97681 0.90589 1.25876 0.94477 0.94765 0.99397 1.69752 1.35549 1.06062 1.32550 0.86242 0.79769 0.79602 0.80283 1.19052 1.20447 1.19091 1.20810 1.08728 1.00675 0.92126 1.20405 0.99440 0.92587 0.97938 1.15979 0.81052 0.84746 0.78428 1.91076 1.74341 1.19982 1.53135 0.88214 0.90148 0.89951 0.85100 0.85103 0.72320 0.77714 0.89286 0.84948 0.91090 0.88447 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.88 59.85 0.65 1.22 16 2 N -0.57 -5.08 3.00 -128.16 -0.39 -5.46 16 3 C 0.53 4.35 8.32 -10.55 -0.09 4.27 16 4 O -0.46 -4.84 17.85 5.60 0.10 -4.74 16 5 C 0.06 0.40 7.88 -4.31 -0.03 0.37 16 6 N -0.44 -4.37 3.04 -65.73 -0.20 -4.57 16 7 N -0.49 -5.97 6.35 27.63 0.18 -5.80 16 8 C 0.71 12.36 8.48 -86.92 -0.74 11.62 16 9 O -0.55 -11.67 14.60 5.29 0.08 -11.59 16 10 N -0.65 -11.96 5.26 -14.10 -0.07 -12.03 16 11 C 0.01 0.30 6.31 -83.57 -0.53 -0.22 16 12 C -0.12 -2.72 9.90 -39.79 -0.39 -3.11 16 13 C -0.14 -3.58 8.61 -39.26 -0.34 -3.92 16 14 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 15 C -0.46 -12.26 9.02 -37.85 -0.34 -12.60 16 16 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 17 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 18 N -0.81 -20.95 10.60 55.55 0.59 -20.36 16 19 Si 0.92 18.94 29.56 -169.99 -5.03 13.91 16 20 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 23 C -0.20 -5.16 9.74 -39.26 -0.38 -5.54 16 24 C -0.08 -2.03 8.61 -39.79 -0.34 -2.37 16 25 C 0.70 8.04 7.52 -88.01 -0.66 7.38 16 26 O -0.52 -7.96 17.18 5.34 0.09 -7.87 16 27 H 0.10 0.70 7.45 -51.93 -0.39 0.31 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.43 4.11 8.93 -182.60 -1.63 2.48 16 33 H 0.39 6.28 7.15 -40.82 -0.29 5.99 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.13 3.49 6.13 -52.48 -0.32 3.17 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 37 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.11 2.61 6.22 -52.49 -0.33 2.29 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -33.75 335.72 -8.51 -42.26 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.04 Total: 10.33 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.88 Total: 0.87 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.10 Total: -48.23 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.27 Total: -24.20 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.75 -8.51 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782133951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.261 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds