Wall clock time and date at job start Tue Mar 31 2020 12:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34765 * 124.17692 * 2 1 4 4 O 1.21227 * 127.16168 * 359.92006 * 3 2 1 5 5 C 1.51590 * 105.68270 * 179.74141 * 3 2 1 6 6 N 1.47308 * 103.59406 * 0.33031 * 5 3 2 7 7 N 1.40097 * 126.69166 * 179.97438 * 6 5 3 8 8 C 1.34773 * 120.00173 * 254.99225 * 7 6 5 9 9 O 1.21583 * 120.00508 * 179.72317 * 8 7 6 10 10 N 1.34781 * 120.00263 * 359.72024 * 8 7 6 11 11 C 1.39238 * 120.00233 * 175.71805 * 10 8 7 12 12 C 1.39479 * 119.83167 * 215.01380 * 11 10 8 13 13 C 1.36382 * 120.16741 * 179.71463 * 12 11 10 14 14 C 1.40863 * 119.82395 * 0.58349 * 13 12 11 15 15 C 1.41160 * 120.16276 * 179.67552 * 14 13 12 16 16 H 1.08000 * 120.00186 * 214.80656 * 15 14 13 17 17 C 1.39898 * 119.99600 * 34.80161 * 15 14 13 18 18 N 1.30878 * 120.00219 * 355.54914 * 17 15 14 19 19 Si 1.86799 * 119.99566 * 175.55166 * 17 15 14 20 20 H 1.48500 * 109.47319 * 59.99990 * 19 17 15 21 21 H 1.48502 * 109.47230 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47088 * 299.99590 * 19 17 15 23 23 C 1.40870 * 119.67775 * 359.68930 * 14 13 12 24 24 C 1.36373 * 119.82604 * 0.02562 * 23 14 13 25 25 C 1.33796 * 124.17660 * 179.97438 * 2 1 3 26 26 O 1.21530 * 123.77439 * 0.04602 * 25 2 1 27 27 H 1.09007 * 109.46794 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46893 * 300.01621 * 1 2 3 29 29 H 1.08998 * 109.46922 * 60.01984 * 1 2 3 30 30 H 1.09003 * 110.69246 * 241.75661 * 5 3 2 31 31 H 1.09006 * 110.50481 * 118.81834 * 5 3 2 32 32 H 0.96997 * 119.99727 * 74.71011 * 7 6 5 33 33 H 0.97003 * 119.99302 * 355.71234 * 10 8 7 34 34 H 1.07999 * 119.91782 * 359.97438 * 12 11 10 35 35 H 1.08004 * 120.08331 * 180.25059 * 13 12 11 36 36 H 0.96999 * 119.99836 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.08335 * 179.97438 * 23 14 13 38 38 H 1.07994 * 119.91380 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8342 2.2635 -0.0013 5 6 3.6597 0.6341 0.0066 6 7 3.5339 -0.8336 0.0016 7 7 4.5817 -1.7636 0.0042 8 6 4.8908 -2.4336 -1.1236 9 8 5.8034 -3.2370 -1.1227 10 7 4.1883 -2.2132 -2.2525 11 6 4.5634 -2.8379 -3.4391 12 6 4.4127 -2.1684 -4.6534 13 6 4.7832 -2.7715 -5.8191 14 6 5.3077 -4.0786 -5.7957 15 6 5.6871 -4.7123 -6.9987 16 1 5.5501 -5.7773 -7.1146 17 6 6.2404 -3.9606 -8.0408 18 7 6.3262 -2.6590 -7.9350 19 14 6.8568 -4.8149 -9.5834 20 1 5.7357 -5.5473 -10.2253 21 1 7.3935 -3.8032 -10.5287 22 1 7.9320 -5.7735 -9.2223 23 6 5.4515 -4.7505 -4.5660 24 6 5.0821 -4.1322 -3.4079 25 6 2.2166 -1.1069 0.0005 26 8 1.7604 -2.2333 0.0002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5141 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 4.1747 0.9718 0.9060 31 1 4.1812 0.9774 -0.8869 32 1 5.0872 -1.9222 0.8166 33 1 3.4214 -1.6194 -2.2383 34 1 4.0055 -1.1682 -4.6701 35 1 4.6697 -2.2503 -6.7582 36 1 6.7095 -2.1378 -8.6577 37 1 5.8526 -5.7530 -4.5405 38 1 5.1921 -4.6459 -2.4644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782133951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:54 Heat of formation + Delta-G solvation = -14.460905 kcal Electronic energy + Delta-G solvation = -26064.010235 eV Core-core repulsion = 22101.664094 eV Total energy + Delta-G solvation = -3962.346141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.56556 -41.53495 -39.87691 -39.26386 -37.68489 -36.85409 -36.25952 -34.70080 -33.56195 -31.50127 -30.67167 -28.74467 -28.21969 -26.85032 -24.24384 -23.66493 -22.97244 -22.24619 -21.33139 -19.81546 -19.70870 -19.21798 -18.21225 -18.03891 -17.60642 -17.25138 -16.93838 -16.82952 -16.26998 -16.04651 -15.66810 -15.45783 -15.20569 -14.95986 -14.82933 -14.52727 -14.03290 -13.78163 -13.62142 -13.52055 -13.25380 -12.95101 -12.79529 -12.52188 -12.47075 -12.01282 -11.59235 -11.44863 -11.38970 -11.19808 -11.09704 -10.98779 -10.73390 -10.37864 -9.48769 -8.75922 -8.50131 -6.32908 -0.02559 0.43106 0.80318 1.13307 1.40561 1.41369 1.48996 1.52931 1.68476 1.92675 2.04125 2.25548 2.80026 2.87533 3.40631 3.67727 3.75833 4.11619 4.31719 4.35443 4.38269 4.44655 4.49502 4.61696 4.78534 4.88742 5.01289 5.11702 5.27031 5.36438 5.49517 5.59454 5.69919 5.78649 5.92369 6.01536 6.11979 6.20982 6.37345 6.58297 6.67088 6.95680 6.97166 7.03907 7.35949 8.42641 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.002950 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.285723 B = 9488.075325 C = 9958.234610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.570 5.570 3 C 0.539 3.461 4 O -0.481 6.481 5 C 0.069 3.931 6 N -0.433 5.433 7 N -0.473 5.473 8 C 0.708 3.292 9 O -0.590 6.590 10 N -0.648 5.648 11 C 0.029 3.971 12 C -0.116 4.116 13 C -0.156 4.156 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.073 0.927 17 C 0.029 3.971 18 N -0.839 5.839 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.266 1.266 23 C -0.218 4.218 24 C -0.095 4.095 25 C 0.696 3.304 26 O -0.560 6.560 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.149 0.851 32 H 0.448 0.552 33 H 0.403 0.597 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.285 0.715 37 H 0.098 0.902 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 11.335 15.023 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.317 5.317 3 C 0.327 3.673 4 O -0.351 6.351 5 C -0.055 4.055 6 N -0.266 5.266 7 N -0.232 5.232 8 C 0.409 3.591 9 O -0.465 6.465 10 N -0.295 5.295 11 C -0.064 4.064 12 C -0.136 4.136 13 C -0.176 4.176 14 C 0.068 3.932 15 C -0.529 4.529 16 H 0.091 0.909 17 C -0.183 4.183 18 N -0.466 5.466 19 Si 0.809 3.191 20 H -0.183 1.183 21 H -0.192 1.192 22 H -0.190 1.190 23 C -0.238 4.238 24 C -0.115 4.115 25 C 0.397 3.603 26 O -0.433 6.433 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.189 0.811 31 H 0.166 0.834 32 H 0.297 0.703 33 H 0.238 0.762 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.549 10.911 14.773 19.856 hybrid contribution 0.140 -0.319 -0.251 0.429 sum -7.409 10.592 14.522 19.441 Atomic orbital electron populations 1.22160 0.73139 1.05580 1.05251 1.46353 1.10476 1.06846 1.68015 1.20821 0.88663 0.84160 0.73699 1.90864 1.79003 1.18379 1.46835 1.23188 0.95570 0.76065 1.10677 1.46013 0.98978 1.03218 1.78367 1.43887 1.28326 1.38444 1.12519 1.16133 0.81452 0.80855 0.80689 1.91018 1.34285 1.38431 1.82777 1.41833 1.31718 1.49323 1.06624 1.17096 1.11977 0.93028 0.84344 1.20475 1.02977 0.98827 0.91315 1.21151 1.01865 0.97268 0.97331 1.18025 0.89303 0.93143 0.92721 1.19713 1.38301 0.95936 0.98904 0.90869 1.26715 0.94016 0.95386 1.02163 1.69810 1.35889 1.07221 1.33715 0.85162 0.79155 0.78562 0.76228 1.18347 1.19193 1.19021 1.20929 1.09412 1.01002 0.92449 1.20502 1.00042 0.93543 0.97399 1.16141 0.81525 0.84656 0.77949 1.91056 1.75236 1.21808 1.55219 0.88874 0.88299 0.88928 0.81095 0.83381 0.70289 0.76186 0.86020 0.86110 0.90404 0.88355 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.88 127.77 1.39 2.30 16 2 N -0.57 -8.80 3.00 -796.64 -2.39 -11.20 16 3 C 0.54 7.18 8.32 87.94 0.73 7.91 16 4 O -0.48 -8.74 17.85 -2.87 -0.05 -8.79 16 5 C 0.07 0.60 7.88 85.76 0.68 1.28 16 6 N -0.43 -7.42 3.04 -480.30 -1.46 -8.88 16 7 N -0.47 -10.33 6.35 -184.75 -1.17 -11.50 16 8 C 0.71 23.73 8.48 179.05 1.52 25.25 16 9 O -0.59 -24.69 14.60 -3.98 -0.06 -24.74 16 10 N -0.65 -22.82 5.26 -316.78 -1.67 -24.49 16 11 C 0.03 1.30 6.31 38.56 0.24 1.54 16 12 C -0.12 -5.20 9.90 22.14 0.22 -4.98 16 13 C -0.16 -8.11 8.61 22.48 0.19 -7.92 16 14 C 0.07 3.89 5.55 -21.28 -0.12 3.77 16 15 C -0.50 -27.31 9.02 23.39 0.21 -27.10 16 16 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 17 C 0.03 1.50 5.42 85.24 0.46 1.96 16 18 N -0.84 -43.76 10.60 21.82 0.23 -43.53 16 19 Si 0.99 38.90 29.56 68.60 2.03 40.93 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 C -0.22 -11.42 9.74 22.48 0.22 -11.20 16 24 C -0.09 -4.64 8.61 22.13 0.19 -4.45 16 25 C 0.70 14.68 7.52 179.44 1.35 16.03 16 26 O -0.56 -16.80 17.18 -3.81 -0.07 -16.87 16 27 H 0.09 1.23 7.45 -2.38 -0.02 1.21 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.15 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.45 7.35 8.93 -213.33 -1.90 5.44 16 33 H 0.40 12.09 7.15 -92.71 -0.66 11.43 16 34 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.12 6.51 6.13 -2.91 -0.02 6.49 16 36 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 37 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.11 5.27 6.22 -2.91 -0.02 5.26 16 Total: -1.00 -75.16 335.72 1.26 -73.90 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -1.42 Total: 30.76 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 7.29 Total: 4.40 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.46 Total: -99.59 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.17 Total: -50.40 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -75.16 1.26 -73.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782133951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.441 kcal (2) G-P(sol) polarization free energy of solvation -75.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds