Wall clock time and date at job start Tue Mar 31 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34754 * 116.99944 * 2 1 4 4 O 1.21514 * 119.99842 * 0.02562 * 3 2 1 5 5 C 1.47398 * 120.00230 * 180.02562 * 3 2 1 6 6 C 1.39665 * 120.48169 * 0.02562 * 5 3 2 7 7 N 1.31631 * 120.50910 * 179.70352 * 6 5 3 8 8 C 1.32638 * 121.64473 * 0.02562 * 7 6 5 9 9 N 1.38431 * 119.53040 * 180.02562 * 8 7 6 10 10 C 1.46500 * 120.00282 * 5.00234 * 9 8 7 11 11 C 1.46498 * 120.00047 * 185.00727 * 9 8 7 12 12 C 1.50699 * 109.47388 * 89.99771 * 11 9 8 13 13 H 1.08000 * 120.00010 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99583 * 180.02562 * 12 11 9 15 15 N 1.31512 * 120.00354 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99514 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47046 * 60.00342 * 16 14 12 18 18 H 1.48498 * 109.46958 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47434 * 300.00268 * 16 14 12 20 20 C 1.39375 * 120.93672 * 359.97438 * 8 7 6 21 21 C 1.36867 * 119.38281 * 0.02562 * 20 8 7 22 22 C 1.50702 * 120.75071 * 180.02562 * 21 20 8 23 23 F 1.39900 * 109.47465 * 359.95981 * 22 21 20 24 24 F 1.39903 * 109.46762 * 119.96207 * 22 21 20 25 25 F 1.39901 * 109.47089 * 239.95419 * 22 21 20 26 26 H 1.09005 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46955 * 299.99296 * 1 2 3 28 28 H 1.08999 * 109.47212 * 59.99442 * 1 2 3 29 29 H 1.07997 * 119.74087 * 359.71803 * 6 5 3 30 30 H 1.09000 * 109.46677 * 89.99625 * 10 9 8 31 31 H 1.09000 * 109.47626 * 209.99869 * 10 9 8 32 32 H 1.08997 * 109.47161 * 330.00188 * 10 9 8 33 33 H 1.09006 * 109.47163 * 210.00390 * 11 9 8 34 34 H 1.09010 * 109.46705 * 329.99740 * 11 9 8 35 35 H 0.97001 * 119.99465 * 180.02562 * 15 14 12 36 36 H 1.07994 * 120.30835 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2779 -0.0006 6 6 4.3063 0.1130 -0.0017 7 7 5.6208 0.1814 -0.0080 8 6 6.2571 1.3451 -0.0131 9 7 7.6413 1.3659 -0.0203 10 6 8.3922 0.1130 -0.1328 11 6 8.3552 2.6408 0.0848 12 6 8.6092 2.9562 1.5364 13 1 8.2728 2.2750 2.3039 14 6 9.2710 4.1146 1.8845 15 7 9.6802 4.9445 0.9499 16 14 9.5852 4.5060 3.6839 17 1 10.4074 3.4274 4.2888 18 1 10.3090 5.7982 3.7903 19 1 8.2896 4.6030 4.4029 20 6 5.5520 2.5473 -0.0124 21 6 4.1835 2.5232 -0.0058 22 6 3.3902 3.8045 -0.0055 23 9 4.2661 4.8954 -0.0116 24 9 2.5793 3.8512 -1.1445 25 9 2.5887 3.8564 1.1400 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.8198 -0.8511 0.0025 30 1 8.5717 -0.1096 -1.1846 31 1 9.3459 0.2131 0.3853 32 1 7.8175 -0.6966 0.3170 33 1 9.3061 2.5694 -0.4433 34 1 7.7518 3.4328 -0.3590 35 1 10.1461 5.7592 1.1949 36 1 6.0804 3.4891 -0.0170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787888368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:24 Heat of formation + Delta-G solvation = -181.682320 kcal Electronic energy + Delta-G solvation = -27559.287884 eV Core-core repulsion = 23015.540987 eV Total energy + Delta-G solvation = -4543.746897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.69716 -47.23509 -47.10225 -40.67650 -39.64124 -36.58712 -36.14364 -33.30126 -32.69876 -30.83473 -28.34102 -27.91079 -26.45360 -25.28676 -24.19472 -22.25564 -21.89369 -20.55084 -18.48402 -18.02873 -17.99326 -17.51601 -16.85410 -16.70922 -16.30702 -15.93539 -15.78778 -14.77427 -14.60575 -14.54447 -14.05479 -13.88093 -13.74548 -13.64329 -13.44868 -13.30787 -13.27963 -13.23415 -12.76717 -12.53562 -12.27767 -12.16708 -11.96608 -11.68862 -11.41702 -11.10309 -10.82459 -10.77776 -10.51845 -10.33369 -10.23430 -10.00583 -9.41854 -9.33070 -8.68273 -7.22542 -6.28997 -4.39910 0.74899 1.28366 2.70017 2.73362 2.95586 3.19403 3.24869 3.26587 3.42659 3.92993 4.02349 4.24783 4.38504 4.70973 4.81123 4.86403 5.03701 5.05816 5.13474 5.15749 5.19077 5.44879 5.60951 5.75179 5.88013 5.91186 6.05798 6.22091 6.38860 6.44002 6.72236 6.94527 7.31213 7.64747 7.82783 7.82889 7.85383 8.22760 8.66944 9.28712 10.76049 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.004606 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.633518 B = 6077.186867 C = 7008.366557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.357 6.357 3 C 0.517 3.483 4 O -0.506 6.506 5 C -0.249 4.249 6 C 0.225 3.775 7 N -0.551 5.551 8 C 0.448 3.552 9 N -0.559 5.559 10 C 0.092 3.908 11 C 0.239 3.761 12 C -0.546 4.546 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.185 4.185 21 C -0.041 4.041 22 C 0.515 3.485 23 F -0.175 7.175 24 F -0.168 7.168 25 F -0.166 7.166 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.172 0.828 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.269 0.731 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 -9.036 -3.439 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.274 6.274 3 C 0.362 3.638 4 O -0.395 6.395 5 C -0.257 4.257 6 C 0.063 3.937 7 N -0.270 5.270 8 C 0.206 3.794 9 N -0.261 5.261 10 C -0.051 4.051 11 C 0.120 3.880 12 C -0.585 4.585 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.727 3.273 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.199 1.199 20 C -0.210 4.210 21 C -0.050 4.050 22 C 0.461 3.539 23 F -0.156 7.156 24 F -0.149 7.149 25 F -0.147 7.147 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.189 0.811 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.064 -9.228 -3.483 14.822 hybrid contribution -0.543 1.343 1.034 1.780 sum -11.607 -7.884 -2.449 14.243 Atomic orbital electron populations 1.23219 0.76251 1.03366 1.02599 1.86504 1.23306 1.32621 1.84927 1.20753 0.88518 0.81545 0.72951 1.90899 1.66740 1.35464 1.46351 1.19094 0.90096 0.94247 1.22266 1.22745 0.87752 0.97064 0.86165 1.67413 1.10147 1.26597 1.22863 1.18558 0.86370 0.88251 0.86191 1.47386 1.00635 1.10272 1.67818 1.21659 0.96830 0.85956 1.00699 1.19702 0.92265 0.77940 0.98064 1.21384 1.38753 1.06716 0.91624 0.91915 1.24932 0.94863 0.95594 0.98172 1.69896 1.37963 1.11811 1.32868 0.86504 0.78716 0.77754 0.84283 1.20020 1.20936 1.19894 1.21260 0.92021 1.01075 1.06645 1.19777 0.94057 0.91588 0.99553 1.17911 0.77678 0.83613 0.74736 1.93211 1.69001 1.57172 1.96258 1.93199 1.74174 1.96645 1.50889 1.93207 1.74609 1.96609 1.50322 0.88226 0.91929 0.91955 0.81055 0.93379 0.90739 0.90655 0.93526 0.93888 0.92150 0.81629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.43 16 2 O -0.36 -4.48 9.83 -40.64 -0.40 -4.88 16 3 C 0.52 8.07 7.74 34.46 0.27 8.33 16 4 O -0.51 -8.96 11.32 -19.28 -0.22 -9.18 16 5 C -0.25 -4.04 5.87 -104.83 -0.62 -4.65 16 6 C 0.23 3.30 10.79 -17.10 -0.18 3.11 16 7 N -0.55 -9.23 9.04 -12.13 -0.11 -9.34 16 8 C 0.45 8.40 7.36 -155.28 -1.14 7.26 16 9 N -0.56 -10.81 2.96 -183.14 -0.54 -11.35 16 10 C 0.09 1.45 10.49 59.85 0.63 2.08 16 11 C 0.24 5.39 4.99 -5.19 -0.03 5.37 16 12 C -0.55 -13.77 9.39 -34.44 -0.32 -14.10 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -23.92 13.29 55.43 0.74 -23.18 16 16 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.19 -3.52 8.60 -39.65 -0.34 -3.86 16 21 C -0.04 -0.74 5.39 -104.32 -0.56 -1.30 16 22 C 0.52 9.45 2.78 36.01 0.10 9.55 16 23 F -0.18 -3.27 16.05 2.25 0.04 -3.23 16 24 F -0.17 -3.06 15.12 2.25 0.03 -3.03 16 25 F -0.17 -3.14 15.14 2.25 0.03 -3.11 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.17 1.91 7.61 -52.49 -0.40 1.51 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 32 H 0.07 1.13 7.28 -51.93 -0.38 0.75 16 33 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.04 1.02 5.94 -51.92 -0.31 0.71 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.17 3.38 5.14 -52.49 -0.27 3.11 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -28.48 323.82 -5.23 -33.71 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -3.43 Total: -1.49 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: -1.23 Total: 14.89 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.09 Total: -43.87 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.62 Total: -14.06 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.10 Total: -9.37 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.48 -5.23 -33.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787888368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.971 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds