Wall clock time and date at job start Tue Mar 31 2020 12:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00076 * 2 1 4 4 N 1.46906 * 109.46888 * 124.66012 * 3 2 1 5 5 C 1.46896 * 110.99925 * 199.67183 * 4 3 2 6 6 C 1.50702 * 109.47190 * 66.04827 * 5 4 3 7 7 H 1.07999 * 119.99639 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00139 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99741 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00174 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47486 * 59.99234 * 10 8 6 12 12 H 1.48495 * 109.47165 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46548 * 299.99557 * 10 8 6 14 14 C 1.46903 * 110.99598 * 75.72082 * 4 3 2 15 15 N 1.46505 * 109.46857 * 199.14177 * 14 4 3 16 16 N 1.40172 * 126.35325 * 264.85074 * 15 14 4 17 17 C 1.29410 * 108.13241 * 179.97438 * 16 15 14 18 18 C 1.50706 * 125.57947 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47238 * 29.97079 * 18 17 16 20 20 F 1.39898 * 109.46916 * 149.97604 * 18 17 16 21 21 N 1.37311 * 108.83775 * 359.73404 * 17 16 15 22 22 C 1.46503 * 125.83072 * 180.27381 * 21 17 16 23 23 C 1.34809 * 108.34240 * 0.43394 * 21 17 16 24 24 S 1.71206 * 126.30422 * 179.84164 * 23 21 17 25 25 H 1.08003 * 119.99699 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00128 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99828 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47114 * 4.66734 * 3 2 1 29 29 H 1.09000 * 109.47124 * 244.66073 * 3 2 1 30 30 H 1.08998 * 109.47183 * 186.04921 * 5 4 3 31 31 H 1.08999 * 109.47469 * 306.04991 * 5 4 3 32 32 H 0.97001 * 119.99705 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47016 * 79.14314 * 14 4 3 34 34 H 1.09002 * 109.47421 * 319.13717 * 14 4 3 35 35 H 1.09007 * 109.46746 * 269.96987 * 18 17 16 36 36 H 1.08998 * 109.47201 * 270.20556 * 22 21 17 37 37 H 1.09001 * 109.47008 * 30.21133 * 22 21 17 38 38 H 1.09006 * 109.46922 * 150.21148 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9904 1.3353 1.1393 5 6 3.3906 2.7128 1.4560 6 6 2.1926 3.4833 1.9481 7 1 1.2303 2.9981 2.0189 8 6 2.3250 4.8077 2.3080 9 7 3.4969 5.3984 2.2223 10 14 0.8402 5.7626 2.9187 11 1 0.3005 5.1113 4.1393 12 1 1.2446 7.1551 3.2388 13 1 -0.2050 5.7802 1.8638 14 6 4.1654 0.4912 0.8843 15 7 4.8229 0.1730 2.1543 16 7 5.9046 0.8583 2.7245 17 6 6.2019 0.2814 3.8441 18 6 7.3060 0.7004 4.7803 19 9 7.5047 2.0814 4.6787 20 9 6.9517 0.3755 6.0941 21 7 5.3424 -0.7708 4.0425 22 6 5.3438 -1.6736 5.1964 23 6 4.4991 -0.8337 2.9926 24 16 3.2438 -1.9759 2.7676 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3581 2.1319 0.0836 29 1 2.6260 1.3999 -0.9288 30 1 4.1572 2.6994 2.2307 31 1 3.7873 3.1910 0.5605 32 1 3.5901 6.3300 2.4758 33 1 4.8624 1.0244 0.2379 34 1 3.8510 -0.4317 0.3968 35 1 8.2259 0.1803 4.5129 36 1 5.9992 -2.5207 4.9941 37 1 5.7024 -1.1385 6.0758 38 1 4.3309 -2.0331 5.3777 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793570051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:49 Heat of formation + Delta-G solvation = 16.168405 kcal Electronic energy + Delta-G solvation = -25148.320067 eV Core-core repulsion = 21211.658548 eV Total energy + Delta-G solvation = -3936.661519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.40803 -48.43897 -43.93214 -39.15412 -36.49517 -35.04011 -34.59397 -33.57096 -30.24850 -29.03778 -28.78997 -26.92474 -25.77384 -24.53156 -22.95462 -22.61973 -20.61324 -19.50115 -19.03912 -18.73003 -18.59469 -18.12328 -17.76549 -17.47478 -17.18631 -16.62715 -16.30640 -15.73786 -15.50445 -15.27873 -14.97633 -14.59782 -14.42299 -14.31809 -14.08404 -13.77868 -13.58312 -13.36816 -13.18728 -12.91815 -12.79266 -12.74554 -12.61390 -12.56007 -12.10935 -12.09268 -11.80700 -11.58554 -11.28351 -10.67987 -10.22191 -9.32529 -8.96113 -8.79814 -8.26920 -6.36883 -0.20835 0.12454 0.19406 0.89765 1.20611 1.34906 1.37378 1.45285 1.51181 2.28208 2.33594 2.75351 2.77821 3.05467 3.17815 3.40627 3.56623 3.65079 3.94499 4.00084 4.06201 4.30376 4.36078 4.45874 4.52071 4.67406 4.78215 4.81915 5.00955 5.07470 5.13755 5.22712 5.54022 5.80018 5.83908 5.92965 6.00300 6.15652 6.35193 6.76578 7.32021 8.83193 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.009953 B = 0.005826 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.589821 B = 4804.638500 C = 6702.415015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C 0.097 3.903 4 N -0.548 5.548 5 C 0.213 3.787 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.009 3.991 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.264 1.264 14 C 0.306 3.694 15 N -0.358 5.358 16 N -0.256 5.256 17 C 0.189 3.811 18 C 0.376 3.624 19 F -0.186 7.186 20 F -0.177 7.177 21 N -0.475 5.475 22 C 0.061 3.939 23 C 0.472 3.528 24 S -0.617 6.617 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.007 0.993 31 H -0.027 1.027 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.221 0.779 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.514 -13.419 3.833 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.158 4.158 3 C -0.030 4.030 4 N -0.274 5.274 5 C 0.088 3.912 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.188 1.188 14 C 0.097 3.903 15 N -0.150 5.150 16 N -0.077 5.077 17 C -0.094 4.094 18 C 0.320 3.680 19 F -0.167 7.167 20 F -0.158 7.158 21 N -0.175 5.175 22 C -0.078 4.078 23 C 0.110 3.890 24 S -0.490 6.490 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.025 0.975 31 H -0.010 1.010 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.237 0.763 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.822 -13.275 3.434 16.866 hybrid contribution -0.049 1.430 0.314 1.465 sum 9.773 -11.844 3.748 15.807 Atomic orbital electron populations 1.23836 0.95678 1.02001 1.00841 1.22818 0.96336 0.97225 0.99416 1.21093 0.94707 0.97092 0.90060 1.61694 1.13711 1.12074 1.39890 1.19405 0.95480 0.82697 0.93642 1.21327 0.95705 0.95539 1.43909 0.92455 1.25805 0.98895 0.98593 0.95711 1.70070 1.24842 1.12645 1.49048 0.85545 0.79410 0.77371 0.78986 1.20164 1.20479 1.18840 1.22342 0.90388 1.00444 0.77174 1.49762 1.24183 1.20993 1.20076 1.77263 1.04253 1.16935 1.09264 1.26100 0.97359 0.89333 0.96579 1.20342 0.93654 0.78868 0.75092 1.93132 1.95280 1.32582 1.95680 1.92994 1.93563 1.91929 1.37336 1.46193 1.24809 1.26606 1.19908 1.22936 1.07392 0.93569 0.83919 1.23714 0.90694 0.90782 0.83840 1.93191 1.29283 1.38757 1.87757 0.89110 0.87041 0.86871 0.90612 0.92948 0.97508 1.00962 0.92619 0.90024 0.84911 0.76262 0.86115 0.85309 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.77 14.32 67.79 0.97 -4.80 16 2 C -0.14 -4.68 9.33 25.65 0.24 -4.44 16 3 C 0.10 3.71 5.24 85.56 0.45 4.16 16 4 N -0.55 -23.81 4.52 -917.72 -4.15 -27.96 16 5 C 0.21 11.31 4.60 85.56 0.39 11.70 16 6 C -0.53 -30.22 8.23 25.60 0.21 -30.01 16 7 H 0.06 3.30 7.31 -2.91 -0.02 3.28 16 8 C 0.01 0.51 5.46 84.65 0.46 0.98 16 9 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 10 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 14 C 0.31 11.12 5.73 170.80 0.98 12.10 16 15 N -0.36 -13.00 3.53 -359.52 -1.27 -14.27 16 16 N -0.26 -8.73 11.81 -49.61 -0.59 -9.32 16 17 C 0.19 4.80 7.61 137.70 1.05 5.85 16 18 C 0.38 5.77 5.76 71.24 0.41 6.18 16 19 F -0.19 -4.46 17.26 44.97 0.78 -3.68 16 20 F -0.18 -2.60 14.53 44.97 0.65 -1.95 16 21 N -0.48 -12.34 3.14 -539.79 -1.69 -14.03 16 22 C 0.06 0.98 10.61 127.77 1.36 2.33 16 23 C 0.47 16.27 7.86 178.99 1.41 17.68 16 24 S -0.62 -23.65 29.72 -56.49 -1.68 -25.33 16 25 H 0.09 2.85 7.84 -2.91 -0.02 2.83 16 26 H 0.11 2.99 8.06 -2.91 -0.02 2.96 16 27 H 0.11 3.69 7.28 -2.91 -0.02 3.67 16 28 H 0.08 3.25 6.23 -2.39 -0.01 3.24 16 29 H 0.05 1.79 8.00 -2.39 -0.02 1.77 16 30 H 0.01 0.40 7.18 -2.39 -0.02 0.38 16 31 H -0.03 -1.54 8.12 -2.39 -0.02 -1.56 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.08 2.82 8.01 -2.39 -0.02 2.80 16 34 H 0.13 4.31 6.53 -2.39 -0.02 4.30 16 35 H 0.22 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.13 1.52 5.54 -2.39 -0.01 1.50 16 38 H 0.10 1.93 7.64 -2.38 -0.02 1.91 16 Total: -1.00 -78.70 345.73 3.37 -75.33 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.09 Total: 7.79 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 7.93 Total: 21.73 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -7.42 Total: -121.04 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 1.43 Total: -5.63 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -23.65 SS G_CDS: -1.68 Total: -25.33 kcal Total: -78.70 3.37 -75.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793570051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.500 kcal (2) G-P(sol) polarization free energy of solvation -78.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds