Wall clock time and date at job start Tue Mar 31 2020 12:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38503 * 125.83313 * 2 1 4 4 C 1.40120 * 125.92241 * 359.96080 * 3 2 1 5 5 H 1.07998 * 120.00531 * 6.61261 * 4 3 2 6 6 C 1.40038 * 119.99553 * 186.61242 * 4 3 2 7 7 N 1.30807 * 120.00179 * 6.65169 * 6 4 3 8 8 Si 1.86797 * 120.00173 * 186.65527 * 6 4 3 9 9 H 1.48491 * 109.47453 * 94.98043 * 8 6 4 10 10 H 1.48499 * 109.47124 * 214.98432 * 8 6 4 11 11 H 1.48503 * 109.46806 * 334.97908 * 8 6 4 12 12 N 1.32242 * 108.14711 * 179.72191 * 3 2 1 13 13 N 1.40162 * 107.75525 * 0.37550 * 12 3 2 14 14 C 1.46504 * 126.14622 * 179.88211 * 13 12 3 15 15 N 1.46894 * 109.47225 * 269.69397 * 14 13 12 16 16 C 1.46908 * 110.99932 * 166.21498 * 15 14 13 17 17 C 1.52993 * 109.46868 * 284.04107 * 16 15 14 18 18 F 1.39901 * 109.47108 * 305.94994 * 17 16 15 19 19 F 1.39893 * 109.47612 * 65.95433 * 17 16 15 20 20 C 1.46898 * 110.99813 * 290.16501 * 15 14 13 21 21 C 1.53005 * 117.50113 * 250.27955 * 20 15 14 22 22 C 1.52997 * 60.00050 * 252.51013 * 21 20 15 23 23 C 1.34721 * 125.83676 * 179.97438 * 2 1 3 24 24 S 1.71200 * 125.97439 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47037 * 270.01667 * 1 2 3 26 26 H 1.09003 * 109.47233 * 30.02229 * 1 2 3 27 27 H 1.09006 * 109.46854 * 150.01574 * 1 2 3 28 28 H 0.96997 * 119.99709 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.46270 * 29.69137 * 14 13 12 30 30 H 1.08996 * 109.47392 * 149.68565 * 14 13 12 31 31 H 1.08996 * 109.46908 * 44.04275 * 16 15 14 32 32 H 1.09002 * 109.46519 * 164.04049 * 16 15 14 33 33 H 1.09000 * 109.46952 * 185.95804 * 17 16 15 34 34 H 1.09005 * 115.55410 * 35.99063 * 20 15 14 35 35 H 1.08998 * 117.49696 * 0.02562 * 21 20 15 36 36 H 1.09003 * 117.49808 * 145.01990 * 21 20 15 37 37 H 1.09000 * 117.49808 * 252.51049 * 22 21 20 38 38 H 1.08999 * 117.50118 * 107.48979 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1229 0.0000 4 6 1.8372 2.4536 -0.0008 5 1 0.7857 2.6758 0.1062 6 6 2.7623 3.4957 -0.1403 7 7 4.0159 3.2270 -0.3999 8 14 2.2062 5.2693 0.0442 9 1 2.4432 5.7199 1.4391 10 1 2.9751 6.1291 -0.8911 11 1 0.7579 5.3691 -0.2689 12 7 3.5358 0.7211 0.0061 13 7 3.5375 -0.6805 0.0013 14 6 4.7216 -1.5432 0.0030 15 7 5.1184 -1.8328 -1.3814 16 6 6.4677 -2.4115 -1.4322 17 6 7.5044 -1.3080 -1.2131 18 9 7.2872 -0.2751 -2.1314 19 9 7.3855 -0.8079 0.0879 20 6 4.1423 -2.7147 -2.0352 21 6 4.5764 -4.1515 -2.3325 22 6 4.4315 -3.1442 -3.4749 23 6 2.2538 -1.0922 0.0005 24 16 1.7194 -2.7186 0.0006 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 4.6566 3.9488 -0.4962 29 1 5.5389 -1.0371 0.5170 30 1 4.4909 -2.4759 0.5176 31 1 6.5692 -3.1656 -0.6517 32 1 6.6285 -2.8731 -2.4065 33 1 8.5051 -1.7161 -1.3555 34 1 3.1009 -2.5503 -1.7586 35 1 5.5860 -4.4424 -2.0426 36 1 3.8205 -4.9326 -2.2513 37 1 3.5803 -3.2626 -4.1454 38 1 5.3459 -2.7723 -3.9371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794625891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:52 Heat of formation + Delta-G solvation = 22.274330 kcal Electronic energy + Delta-G solvation = -25748.777203 eV Core-core repulsion = 21812.380457 eV Total energy + Delta-G solvation = -3936.396746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.69922 -46.67836 -40.91009 -38.68161 -34.90099 -33.96590 -33.23394 -30.93689 -29.27224 -27.17095 -26.56886 -24.43262 -23.13149 -22.07394 -21.69731 -20.91028 -19.74944 -17.82685 -17.62962 -17.15884 -16.77266 -16.52252 -15.76494 -15.55704 -15.30266 -14.88151 -14.60166 -14.57180 -13.84458 -13.65648 -13.35512 -13.03952 -12.91375 -12.51004 -12.27127 -12.16559 -11.97808 -11.78767 -11.69126 -11.49524 -11.25552 -11.11553 -10.99072 -10.68599 -10.53089 -10.28971 -10.08496 -9.98522 -9.53115 -9.20773 -8.85226 -8.05046 -7.01495 -6.85044 -6.65610 -5.10126 2.25247 2.51067 2.81366 2.93983 2.98289 3.26865 3.54397 3.67223 3.73640 3.95808 4.11757 4.26222 4.39968 4.53335 4.87070 4.91709 5.09836 5.21015 5.32326 5.35309 5.41565 5.47227 5.57513 5.72977 5.83839 5.84393 6.08245 6.11643 6.25489 6.35887 6.43189 6.53183 6.83340 6.99068 7.04489 7.18294 7.56913 7.78147 8.25270 8.37786 9.15274 9.97531 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.012082 B = 0.005916 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.852135 B = 4731.992490 C = 6369.901327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.512 5.512 3 C 0.372 3.628 4 C -0.440 4.440 5 H 0.097 0.903 6 C 0.077 3.923 7 N -0.731 5.731 8 Si 0.928 3.072 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.259 1.259 12 N -0.327 5.327 13 N -0.362 5.362 14 C 0.309 3.691 15 N -0.510 5.510 16 C 0.001 3.999 17 C 0.268 3.732 18 F -0.189 7.189 19 F -0.202 7.202 20 C 0.016 3.984 21 C -0.212 4.212 22 C -0.181 4.181 23 C 0.458 3.542 24 S -0.711 6.711 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.286 0.714 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.161 0.839 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -4.638 -2.309 7.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.212 5.212 3 C 0.123 3.877 4 C -0.482 4.482 5 H 0.115 0.885 6 C -0.150 4.150 7 N -0.355 5.355 8 Si 0.751 3.249 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.183 1.183 12 N -0.158 5.158 13 N -0.147 5.147 14 C 0.098 3.902 15 N -0.233 5.233 16 C -0.128 4.128 17 C 0.214 3.786 18 F -0.171 7.171 19 F -0.183 7.183 20 C -0.093 4.093 21 C -0.251 4.251 22 C -0.219 4.219 23 C 0.088 3.912 24 S -0.585 6.585 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.141 0.859 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.178 0.822 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.041 -4.722 -2.548 8.080 hybrid contribution -0.665 0.749 0.365 1.066 sum 5.376 -3.973 -2.183 7.032 Atomic orbital electron populations 1.21775 0.75380 1.04269 1.02964 1.46005 1.08258 1.04993 1.61939 1.21377 0.84024 0.88529 0.93727 1.18330 0.96073 0.85565 1.48201 0.88458 1.25841 0.94341 1.01923 0.92937 1.69887 1.02618 1.35421 1.27567 0.85965 0.79937 0.79800 0.79202 1.19149 1.19807 1.18316 1.79449 1.13777 0.82048 1.40548 1.49111 1.03001 1.07356 1.55228 1.22203 0.86112 0.92870 0.89024 1.61666 1.00402 1.43914 1.17327 1.23303 0.89463 0.95324 1.04752 1.21972 0.99915 0.84450 0.72250 1.93043 1.96413 1.61571 1.66024 1.92895 1.96843 1.89472 1.39110 1.23774 0.99172 0.90281 0.96088 1.23427 1.02233 0.94788 1.04682 1.23045 1.03130 1.03614 0.92104 1.22946 0.85122 0.92526 0.90599 1.92688 1.85200 0.98817 1.81808 0.91499 0.89628 0.89200 0.90248 0.85945 0.90386 0.91067 0.87236 0.87292 0.82211 0.89294 0.88608 0.88729 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 10.63 59.85 0.64 2.41 16 2 N -0.51 -11.67 3.17 -124.65 -0.39 -12.06 16 3 C 0.37 9.34 7.47 -155.27 -1.16 8.18 16 4 C -0.44 -10.42 8.94 -38.20 -0.34 -10.76 16 5 H 0.10 2.06 7.22 -52.49 -0.38 1.68 16 6 C 0.08 1.77 5.49 -17.31 -0.10 1.68 16 7 N -0.73 -18.31 11.97 55.55 0.67 -17.64 16 8 Si 0.93 16.97 29.57 -169.99 -5.03 11.95 16 9 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 10 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 11 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 12 N -0.33 -8.61 10.87 31.21 0.34 -8.27 16 13 N -0.36 -8.58 3.69 -65.05 -0.24 -8.82 16 14 C 0.31 6.16 5.79 -63.32 -0.37 5.80 16 15 N -0.51 -9.17 4.61 -230.52 -1.06 -10.23 16 16 C 0.00 0.02 3.99 -3.82 -0.02 0.00 16 17 C 0.27 3.52 5.58 37.15 0.21 3.72 16 18 F -0.19 -3.28 17.15 2.25 0.04 -3.24 16 19 F -0.20 -3.20 14.58 2.25 0.03 -3.16 16 20 C 0.02 0.30 5.71 -67.71 -0.39 -0.09 16 21 C -0.21 -3.03 9.59 -26.73 -0.26 -3.29 16 22 C -0.18 -2.71 9.88 -26.73 -0.26 -2.97 16 23 C 0.46 10.84 6.99 -86.94 -0.61 10.24 16 24 S -0.71 -16.66 26.75 -107.50 -2.88 -19.53 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 27 H 0.09 1.57 7.61 -51.93 -0.40 1.18 16 28 H 0.29 6.53 8.29 -40.82 -0.34 6.19 16 29 H 0.12 2.43 5.19 -51.92 -0.27 2.16 16 30 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 31 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 32 H 0.11 1.22 5.51 -51.93 -0.29 0.93 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.16 3.46 3.97 -40.15 -0.16 3.30 16 35 H 0.09 1.06 6.13 -51.93 -0.32 0.75 16 36 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.25 7.24 -51.93 -0.38 0.87 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -31.33 330.18 -10.38 -41.72 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.19 Total: 9.41 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: -2.65 Total: 14.91 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.69 Total: -57.02 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.07 Total: -6.40 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 16 Polarization: -16.66 SS G_CDS: -2.88 Total: -19.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.33 -10.38 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.990 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds