Wall clock time and date at job start Tue Mar 31 2020 12:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38503 * 125.83313 * 2 1 4 4 C 1.40120 * 125.92241 * 359.96080 * 3 2 1 5 5 H 1.07998 * 120.00531 * 6.61261 * 4 3 2 6 6 C 1.40038 * 119.99553 * 186.61242 * 4 3 2 7 7 N 1.30807 * 120.00179 * 6.65169 * 6 4 3 8 8 Si 1.86797 * 120.00173 * 186.65527 * 6 4 3 9 9 H 1.48491 * 109.47453 * 94.98043 * 8 6 4 10 10 H 1.48499 * 109.47124 * 214.98432 * 8 6 4 11 11 H 1.48503 * 109.46806 * 334.97908 * 8 6 4 12 12 N 1.32242 * 108.14711 * 179.72191 * 3 2 1 13 13 N 1.40162 * 107.75525 * 0.37550 * 12 3 2 14 14 C 1.46504 * 126.14622 * 179.88211 * 13 12 3 15 15 N 1.46894 * 109.47225 * 269.69397 * 14 13 12 16 16 C 1.46908 * 110.99932 * 166.21498 * 15 14 13 17 17 C 1.52993 * 109.46868 * 284.04107 * 16 15 14 18 18 F 1.39901 * 109.47108 * 305.94994 * 17 16 15 19 19 F 1.39893 * 109.47612 * 65.95433 * 17 16 15 20 20 C 1.46898 * 110.99813 * 290.16501 * 15 14 13 21 21 C 1.53005 * 117.50113 * 250.27955 * 20 15 14 22 22 C 1.52997 * 60.00050 * 252.51013 * 21 20 15 23 23 C 1.34721 * 125.83676 * 179.97438 * 2 1 3 24 24 S 1.71200 * 125.97439 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47037 * 270.01667 * 1 2 3 26 26 H 1.09003 * 109.47233 * 30.02229 * 1 2 3 27 27 H 1.09006 * 109.46854 * 150.01574 * 1 2 3 28 28 H 0.96997 * 119.99709 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.46270 * 29.69137 * 14 13 12 30 30 H 1.08996 * 109.47392 * 149.68565 * 14 13 12 31 31 H 1.08996 * 109.46908 * 44.04275 * 16 15 14 32 32 H 1.09002 * 109.46519 * 164.04049 * 16 15 14 33 33 H 1.09000 * 109.46952 * 185.95804 * 17 16 15 34 34 H 1.09005 * 115.55410 * 35.99063 * 20 15 14 35 35 H 1.08998 * 117.49696 * 0.02562 * 21 20 15 36 36 H 1.09003 * 117.49808 * 145.01990 * 21 20 15 37 37 H 1.09000 * 117.49808 * 252.51049 * 22 21 20 38 38 H 1.08999 * 117.50118 * 107.48979 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1229 0.0000 4 6 1.8372 2.4536 -0.0008 5 1 0.7857 2.6758 0.1062 6 6 2.7623 3.4957 -0.1403 7 7 4.0159 3.2270 -0.3999 8 14 2.2062 5.2693 0.0442 9 1 2.4432 5.7199 1.4391 10 1 2.9751 6.1291 -0.8911 11 1 0.7579 5.3691 -0.2689 12 7 3.5358 0.7211 0.0061 13 7 3.5375 -0.6805 0.0013 14 6 4.7216 -1.5432 0.0030 15 7 5.1184 -1.8328 -1.3814 16 6 6.4677 -2.4115 -1.4322 17 6 7.5044 -1.3080 -1.2131 18 9 7.2872 -0.2751 -2.1314 19 9 7.3855 -0.8079 0.0879 20 6 4.1423 -2.7147 -2.0352 21 6 4.5764 -4.1515 -2.3325 22 6 4.4315 -3.1442 -3.4749 23 6 2.2538 -1.0922 0.0005 24 16 1.7194 -2.7186 0.0006 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 4.6566 3.9488 -0.4962 29 1 5.5389 -1.0371 0.5170 30 1 4.4909 -2.4759 0.5176 31 1 6.5692 -3.1656 -0.6517 32 1 6.6285 -2.8731 -2.4065 33 1 8.5051 -1.7161 -1.3555 34 1 3.1009 -2.5503 -1.7586 35 1 5.5860 -4.4424 -2.0426 36 1 3.8205 -4.9326 -2.2513 37 1 3.5803 -3.2626 -4.1454 38 1 5.3459 -2.7723 -3.9371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794625891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:52 Heat of formation + Delta-G solvation = 3.994152 kcal Electronic energy + Delta-G solvation = -25749.569891 eV Core-core repulsion = 21812.380457 eV Total energy + Delta-G solvation = -3937.189434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.84000 -47.86169 -42.66867 -39.96557 -36.48775 -35.70141 -34.60123 -32.60329 -30.66540 -28.65052 -28.31035 -25.98573 -24.24707 -23.43414 -23.24245 -22.64257 -21.05769 -19.53097 -18.84342 -18.40640 -18.15831 -17.96911 -17.45497 -17.00669 -16.68655 -16.48386 -16.06853 -16.02861 -15.20296 -14.97225 -14.85097 -14.24054 -14.17437 -13.90598 -13.75875 -13.52406 -13.45577 -13.20498 -13.01362 -12.94713 -12.72567 -12.49384 -12.37423 -12.17229 -11.97163 -11.73896 -11.48002 -11.37744 -11.31701 -10.85611 -10.65204 -9.33917 -8.78629 -8.66435 -8.44928 -6.95872 0.49212 0.76083 1.28110 1.44065 1.60667 1.61846 1.85672 2.12087 2.36618 2.54291 2.91023 3.09199 3.13934 3.40407 3.54062 3.58617 3.80470 3.99169 4.03233 4.13957 4.14900 4.29353 4.37133 4.44129 4.44843 4.59132 4.69895 4.71573 4.88391 4.96936 5.07170 5.09308 5.22249 5.25722 5.67757 5.81353 5.91104 6.08373 6.48486 6.56803 7.32681 8.25607 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.012082 B = 0.005916 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.852135 B = 4731.992490 C = 6369.901327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.515 5.515 3 C 0.351 3.649 4 C -0.454 4.454 5 H 0.120 0.880 6 C 0.035 3.965 7 N -0.776 5.776 8 Si 1.007 2.993 9 H -0.264 1.264 10 H -0.272 1.272 11 H -0.243 1.243 12 N -0.366 5.366 13 N -0.364 5.364 14 C 0.309 3.691 15 N -0.525 5.525 16 C -0.002 4.002 17 C 0.256 3.744 18 F -0.218 7.218 19 F -0.222 7.222 20 C -0.019 4.019 21 C -0.185 4.185 22 C -0.170 4.170 23 C 0.448 3.552 24 S -0.721 6.721 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.291 0.709 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.171 0.829 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -4.569 -2.769 7.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.216 5.216 3 C 0.103 3.897 4 C -0.495 4.495 5 H 0.138 0.862 6 C -0.189 4.189 7 N -0.400 5.400 8 Si 0.826 3.174 9 H -0.189 1.189 10 H -0.197 1.197 11 H -0.166 1.166 12 N -0.198 5.198 13 N -0.150 5.150 14 C 0.098 3.902 15 N -0.249 5.249 16 C -0.130 4.130 17 C 0.203 3.797 18 F -0.200 7.200 19 F -0.203 7.203 20 C -0.128 4.128 21 C -0.223 4.223 22 C -0.208 4.208 23 C 0.077 3.923 24 S -0.596 6.596 25 H 0.101 0.899 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.152 0.848 33 H 0.188 0.812 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.345 -4.694 -3.019 8.450 hybrid contribution -0.746 0.668 0.490 1.115 sum 5.598 -4.026 -2.529 7.345 Atomic orbital electron populations 1.22051 0.73030 1.05276 1.04350 1.46292 1.09708 1.04109 1.61448 1.21763 0.84347 0.89552 0.94050 1.18897 0.97469 0.85358 1.47805 0.86242 1.26941 0.93960 1.06402 0.91559 1.70007 1.04191 1.37136 1.28661 0.84800 0.80155 0.73483 0.78997 1.18862 1.19711 1.16573 1.79331 1.15135 0.83558 1.41775 1.49423 1.03932 1.06860 1.54780 1.22278 0.85013 0.92140 0.90741 1.61631 1.02462 1.45237 1.15567 1.23570 0.86681 0.95788 1.06984 1.22753 1.02958 0.83404 0.70592 1.92980 1.96774 1.63153 1.67057 1.92850 1.97051 1.89804 1.40627 1.23485 0.97777 0.93062 0.98512 1.23453 1.03491 0.92667 1.02732 1.23094 1.03649 1.03020 0.90991 1.23058 0.85455 0.92776 0.91041 1.92536 1.85230 0.99277 1.82596 0.89862 0.87633 0.89135 0.89865 0.86398 0.90512 0.88588 0.84780 0.81196 0.86057 0.86258 0.89138 0.88888 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.32 10.63 127.77 1.36 4.68 16 2 N -0.52 -23.83 3.17 -548.28 -1.74 -25.57 16 3 C 0.35 17.97 7.47 133.52 1.00 18.97 16 4 C -0.45 -21.42 8.94 23.16 0.21 -21.22 16 5 H 0.12 4.89 7.22 -2.91 -0.02 4.87 16 6 C 0.03 1.58 5.49 85.28 0.47 2.05 16 7 N -0.78 -39.57 11.97 21.84 0.26 -39.31 16 8 Si 1.01 33.90 29.57 68.60 2.03 35.93 16 9 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 10 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 11 H -0.24 -7.47 7.11 99.48 0.71 -6.77 16 12 N -0.37 -19.90 10.87 -55.16 -0.60 -20.50 16 13 N -0.36 -17.82 3.69 -359.72 -1.33 -19.15 16 14 C 0.31 12.60 5.79 170.81 0.99 13.59 16 15 N -0.53 -18.75 4.61 -883.24 -4.07 -22.82 16 16 C 0.00 -0.05 3.99 86.30 0.34 0.30 16 17 C 0.26 6.25 5.58 71.98 0.40 6.66 16 18 F -0.22 -7.46 17.15 44.97 0.77 -6.69 16 19 F -0.22 -6.97 14.58 44.97 0.66 -6.31 16 20 C -0.02 -0.67 5.71 44.92 0.26 -0.41 16 21 C -0.18 -4.88 9.59 30.60 0.29 -4.59 16 22 C -0.17 -4.82 9.88 30.59 0.30 -4.51 16 23 C 0.45 21.71 6.99 179.06 1.25 22.96 16 24 S -0.72 -34.30 26.75 -56.49 -1.51 -35.81 16 25 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.11 3.23 7.40 -2.39 -0.02 3.22 16 27 H 0.09 3.16 7.61 -2.38 -0.02 3.14 16 28 H 0.29 13.52 8.29 -92.71 -0.77 12.75 16 29 H 0.12 4.84 5.19 -2.38 -0.01 4.83 16 30 H 0.08 3.06 7.58 -2.39 -0.02 3.04 16 31 H 0.10 1.82 7.74 -2.39 -0.02 1.81 16 32 H 0.13 2.49 5.51 -2.39 -0.01 2.48 16 33 H 0.17 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.12 5.37 3.97 -9.87 -0.04 5.33 16 35 H 0.12 2.40 6.13 -2.39 -0.01 2.38 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.10 2.64 7.24 -2.39 -0.02 2.63 16 Total: -1.00 -71.05 330.18 2.43 -68.63 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 1.08 Total: 33.11 kcal Atomic # 6 Polarization: 31.61 SS G_CDS: 6.87 Total: 38.48 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -7.47 Total: -127.35 kcal Atomic # 9 Polarization: -14.42 SS G_CDS: 1.43 Total: -13.00 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: 2.03 Total: 35.93 kcal Atomic # 16 Polarization: -34.30 SS G_CDS: -1.51 Total: -35.81 kcal Total: -71.05 2.43 -68.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.622 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds