Wall clock time and date at job start Tue Mar 31 2020 12:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38496 * 125.82922 * 2 1 4 4 C 1.40118 * 125.93163 * 359.96738 * 3 2 1 5 5 H 1.07999 * 120.00079 * 5.64363 * 4 3 2 6 6 C 1.40038 * 119.99980 * 185.64617 * 4 3 2 7 7 N 1.30801 * 120.00232 * 353.91282 * 6 4 3 8 8 Si 1.86804 * 119.99653 * 173.63220 * 6 4 3 9 9 H 1.48504 * 109.46865 * 94.98677 * 8 6 4 10 10 H 1.48503 * 109.47038 * 214.97840 * 8 6 4 11 11 H 1.48495 * 109.47222 * 334.98531 * 8 6 4 12 12 N 1.32245 * 108.14227 * 180.22971 * 3 2 1 13 13 N 1.40157 * 107.76123 * 359.64294 * 12 3 2 14 14 C 1.46503 * 126.15062 * 180.10429 * 13 12 3 15 15 N 1.46891 * 109.47397 * 270.30300 * 14 13 12 16 16 C 1.46851 * 110.99763 * 294.20677 * 15 14 13 17 17 C 1.53040 * 109.52483 * 174.16305 * 16 15 14 18 18 C 1.53118 * 109.27661 * 59.17562 * 17 16 15 19 19 F 1.39901 * 109.52136 * 182.44437 * 18 17 16 20 20 F 1.39902 * 109.57626 * 62.28875 * 18 17 16 21 21 C 1.53121 * 109.16523 * 302.34747 * 18 17 16 22 22 C 1.46842 * 111.00207 * 169.99955 * 15 14 13 23 23 C 1.34722 * 125.83624 * 180.02562 * 2 1 3 24 24 S 1.71200 * 125.97609 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47231 * 90.00094 * 1 2 3 26 26 H 1.09003 * 109.46705 * 209.99952 * 1 2 3 27 27 H 1.08998 * 109.47694 * 329.99673 * 1 2 3 28 28 H 0.96999 * 119.99650 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46597 * 30.30187 * 14 13 12 30 30 H 1.09001 * 109.47268 * 150.29523 * 14 13 12 31 31 H 1.09005 * 109.46230 * 294.17631 * 16 15 14 32 32 H 1.08999 * 109.46538 * 54.14681 * 16 15 14 33 33 H 1.09002 * 109.50228 * 299.23882 * 17 16 15 34 34 H 1.08999 * 109.53671 * 179.13789 * 17 16 15 35 35 H 1.09003 * 109.49821 * 297.71891 * 21 18 17 36 36 H 1.08993 * 109.54056 * 177.61784 * 21 18 17 37 37 H 1.09003 * 109.46068 * 305.84958 * 22 15 14 38 38 H 1.08997 * 109.46743 * 65.82995 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2757 1.1229 0.0000 4 6 1.8372 2.4537 -0.0006 5 1 0.7841 2.6753 0.0908 6 6 2.7644 3.4964 -0.1199 7 7 4.0462 3.2360 -0.1108 8 14 2.1703 5.2583 -0.2998 9 1 2.1422 5.9098 1.0344 10 1 3.0925 6.0026 -1.1946 11 1 0.8043 5.2631 -0.8820 12 7 3.5357 0.7211 -0.0050 13 7 3.5375 -0.6805 0.0000 14 6 4.7216 -1.5431 -0.0009 15 7 5.1171 -1.8306 -1.3860 16 6 4.0941 -2.6320 -2.0699 17 6 4.4687 -2.7883 -3.5454 18 6 5.8344 -3.4727 -3.6504 19 9 6.2074 -3.5681 -4.9954 20 9 5.7607 -4.7541 -3.0937 21 6 6.8723 -2.6431 -2.8893 22 6 6.4278 -2.4909 -1.4328 23 6 2.2538 -1.0922 -0.0005 24 16 1.7194 -2.7187 -0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 4.6883 3.9584 -0.1930 29 1 5.5394 -1.0380 0.5132 30 1 4.4914 -2.4767 0.5125 31 1 4.0325 -3.6158 -1.6046 32 1 3.1287 -2.1321 -1.9913 33 1 4.5171 -1.8057 -4.0147 34 1 3.7175 -3.3960 -4.0498 35 1 6.9583 -1.6581 -3.3483 36 1 7.8383 -3.1465 -2.9244 37 1 7.1575 -1.8886 -0.8916 38 1 6.3553 -3.4754 -0.9708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794686621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:45 Heat of formation + Delta-G solvation = -16.966368 kcal Electronic energy + Delta-G solvation = -25422.647525 eV Core-core repulsion = 21484.549175 eV Total energy + Delta-G solvation = -3938.098350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.89369 -46.89341 -40.99008 -38.42272 -34.76662 -34.00621 -32.27815 -31.18958 -30.40554 -27.78728 -26.64428 -25.11553 -23.53716 -22.93948 -21.43326 -20.97363 -19.97246 -17.85721 -17.40581 -16.84978 -16.74643 -16.14510 -15.83886 -15.80282 -15.18551 -15.04630 -14.72689 -14.41895 -13.94227 -13.69983 -13.41525 -13.21969 -12.97071 -12.67647 -12.47045 -12.30392 -12.22854 -12.09721 -11.86095 -11.59260 -11.49355 -11.31674 -11.14875 -11.09796 -10.71127 -10.58723 -10.31871 -10.05593 -9.60990 -9.29910 -8.93100 -8.27337 -7.09899 -6.85505 -6.75758 -5.19235 2.19877 2.46063 2.74917 2.88504 2.92795 3.23919 3.47754 3.60825 3.77706 3.91870 4.09992 4.15471 4.38808 4.53139 4.78851 4.97170 5.14867 5.21626 5.34446 5.39848 5.48409 5.56164 5.59861 5.72312 5.76769 5.79555 5.90522 6.03130 6.13293 6.23188 6.34234 6.46643 6.75649 6.92917 6.99545 7.08142 7.49906 7.70922 8.17224 8.29990 9.07609 9.88275 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.004385 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.138260 B = 6383.432278 C = 7408.732375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.513 5.513 3 C 0.372 3.628 4 C -0.438 4.438 5 H 0.098 0.902 6 C 0.077 3.923 7 N -0.734 5.734 8 Si 0.928 3.072 9 H -0.267 1.267 10 H -0.272 1.272 11 H -0.259 1.259 12 N -0.330 5.330 13 N -0.371 5.371 14 C 0.327 3.673 15 N -0.551 5.551 16 C 0.058 3.942 17 C -0.152 4.152 18 C 0.285 3.715 19 F -0.206 7.206 20 F -0.201 7.201 21 C -0.150 4.150 22 C 0.063 3.937 23 C 0.462 3.538 24 S -0.712 6.712 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.286 0.714 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -2.467 -3.152 5.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.213 5.213 3 C 0.123 3.877 4 C -0.479 4.479 5 H 0.116 0.884 6 C -0.150 4.150 7 N -0.358 5.358 8 Si 0.751 3.249 9 H -0.192 1.192 10 H -0.197 1.197 11 H -0.182 1.182 12 N -0.161 5.161 13 N -0.156 5.156 14 C 0.115 3.885 15 N -0.278 5.278 16 C -0.070 4.070 17 C -0.191 4.191 18 C 0.249 3.751 19 F -0.187 7.187 20 F -0.182 7.182 21 C -0.188 4.188 22 C -0.066 4.066 23 C 0.092 3.908 24 S -0.588 6.588 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.579 -2.659 -3.410 6.298 hybrid contribution -0.737 0.570 0.100 0.937 sum 3.842 -2.089 -3.309 5.484 Atomic orbital electron populations 1.21776 0.75330 1.04184 1.03085 1.46002 1.08285 1.04979 1.62060 1.21348 0.84059 0.88535 0.93790 1.18354 0.95891 0.85596 1.48090 0.88449 1.25835 0.94297 1.01891 0.92990 1.69879 1.01731 1.35167 1.29064 0.85961 0.79962 0.79724 0.79291 1.19150 1.19708 1.18218 1.79450 1.13765 0.81982 1.40948 1.49165 1.03080 1.07400 1.55988 1.21657 0.85143 0.92431 0.89229 1.61875 1.02754 1.46964 1.16205 1.22390 0.96148 0.97614 0.90866 1.22620 0.93954 1.02488 1.00036 1.21242 0.97905 0.80254 0.75727 1.92986 1.93038 1.96573 1.36063 1.92991 1.97432 1.42531 1.85228 1.22539 0.97846 1.01860 0.96567 1.21897 0.91066 0.98261 0.95351 1.22973 0.85046 0.92523 0.90218 1.92825 1.85466 0.98693 1.81801 0.91376 0.89178 0.89735 0.90297 0.87544 0.90423 0.92410 0.88167 0.88450 0.89249 0.87870 0.89117 0.89020 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.66 59.85 0.64 2.34 16 2 N -0.51 -11.18 3.17 -124.65 -0.39 -11.57 16 3 C 0.37 8.86 7.50 -155.27 -1.16 7.70 16 4 C -0.44 -9.91 8.99 -38.20 -0.34 -10.25 16 5 H 0.10 1.98 7.08 -52.49 -0.37 1.60 16 6 C 0.08 1.69 5.49 -17.32 -0.10 1.59 16 7 N -0.73 -17.31 11.93 55.55 0.66 -16.65 16 8 Si 0.93 16.18 29.57 -169.99 -5.03 11.16 16 9 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 10 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 11 H -0.26 -4.40 7.11 56.52 0.40 -3.99 16 12 N -0.33 -8.15 10.79 31.21 0.34 -7.81 16 13 N -0.37 -8.19 3.57 -65.05 -0.23 -8.43 16 14 C 0.33 5.93 5.98 -63.32 -0.38 5.56 16 15 N -0.55 -9.14 4.80 -238.58 -1.14 -10.28 16 16 C 0.06 1.00 4.20 -3.83 -0.02 0.98 16 17 C -0.15 -2.27 5.62 -26.65 -0.15 -2.42 16 18 C 0.28 3.97 2.12 -26.61 -0.06 3.91 16 19 F -0.21 -2.96 17.07 2.25 0.04 -2.93 16 20 F -0.20 -3.04 16.23 2.25 0.04 -3.00 16 21 C -0.15 -1.78 5.62 -26.65 -0.15 -1.93 16 22 C 0.06 0.80 5.35 -3.84 -0.02 0.78 16 23 C 0.46 10.44 6.58 -86.93 -0.57 9.87 16 24 S -0.71 -16.42 27.20 -107.50 -2.92 -19.34 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.52 7.61 -51.93 -0.40 1.13 16 27 H 0.08 1.27 7.27 -51.93 -0.38 0.89 16 28 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 29 H 0.11 1.78 7.99 -51.93 -0.41 1.36 16 30 H 0.08 1.40 7.63 -51.93 -0.40 1.00 16 31 H 0.06 1.06 7.83 -51.93 -0.41 0.65 16 32 H 0.10 2.08 5.14 -51.93 -0.27 1.81 16 33 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.02 8.02 -51.93 -0.42 0.60 16 38 H 0.05 0.60 7.88 -51.93 -0.41 0.19 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -28.82 329.19 -10.70 -39.51 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.70 Total: 6.27 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: -2.31 Total: 18.12 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.77 Total: -54.74 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.03 Total: 11.16 kcal Atomic # 16 Polarization: -16.42 SS G_CDS: -2.92 Total: -19.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.82 -10.70 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794686621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.547 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds