Wall clock time and date at job start Tue Mar 31 2020 12:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38496 * 125.82922 * 2 1 4 4 C 1.40118 * 125.93163 * 359.96738 * 3 2 1 5 5 H 1.07999 * 120.00079 * 5.64363 * 4 3 2 6 6 C 1.40038 * 119.99980 * 185.64617 * 4 3 2 7 7 N 1.30801 * 120.00232 * 353.91282 * 6 4 3 8 8 Si 1.86804 * 119.99653 * 173.63220 * 6 4 3 9 9 H 1.48504 * 109.46865 * 94.98677 * 8 6 4 10 10 H 1.48503 * 109.47038 * 214.97840 * 8 6 4 11 11 H 1.48495 * 109.47222 * 334.98531 * 8 6 4 12 12 N 1.32245 * 108.14227 * 180.22971 * 3 2 1 13 13 N 1.40157 * 107.76123 * 359.64294 * 12 3 2 14 14 C 1.46503 * 126.15062 * 180.10429 * 13 12 3 15 15 N 1.46891 * 109.47397 * 270.30300 * 14 13 12 16 16 C 1.46851 * 110.99763 * 294.20677 * 15 14 13 17 17 C 1.53040 * 109.52483 * 174.16305 * 16 15 14 18 18 C 1.53118 * 109.27661 * 59.17562 * 17 16 15 19 19 F 1.39901 * 109.52136 * 182.44437 * 18 17 16 20 20 F 1.39902 * 109.57626 * 62.28875 * 18 17 16 21 21 C 1.53121 * 109.16523 * 302.34747 * 18 17 16 22 22 C 1.46842 * 111.00207 * 169.99955 * 15 14 13 23 23 C 1.34722 * 125.83624 * 180.02562 * 2 1 3 24 24 S 1.71200 * 125.97609 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47231 * 90.00094 * 1 2 3 26 26 H 1.09003 * 109.46705 * 209.99952 * 1 2 3 27 27 H 1.08998 * 109.47694 * 329.99673 * 1 2 3 28 28 H 0.96999 * 119.99650 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46597 * 30.30187 * 14 13 12 30 30 H 1.09001 * 109.47268 * 150.29523 * 14 13 12 31 31 H 1.09005 * 109.46230 * 294.17631 * 16 15 14 32 32 H 1.08999 * 109.46538 * 54.14681 * 16 15 14 33 33 H 1.09002 * 109.50228 * 299.23882 * 17 16 15 34 34 H 1.08999 * 109.53671 * 179.13789 * 17 16 15 35 35 H 1.09003 * 109.49821 * 297.71891 * 21 18 17 36 36 H 1.08993 * 109.54056 * 177.61784 * 21 18 17 37 37 H 1.09003 * 109.46068 * 305.84958 * 22 15 14 38 38 H 1.08997 * 109.46743 * 65.82995 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2757 1.1229 0.0000 4 6 1.8372 2.4537 -0.0006 5 1 0.7841 2.6753 0.0908 6 6 2.7644 3.4964 -0.1199 7 7 4.0462 3.2360 -0.1108 8 14 2.1703 5.2583 -0.2998 9 1 2.1422 5.9098 1.0344 10 1 3.0925 6.0026 -1.1946 11 1 0.8043 5.2631 -0.8820 12 7 3.5357 0.7211 -0.0050 13 7 3.5375 -0.6805 0.0000 14 6 4.7216 -1.5431 -0.0009 15 7 5.1171 -1.8306 -1.3860 16 6 4.0941 -2.6320 -2.0699 17 6 4.4687 -2.7883 -3.5454 18 6 5.8344 -3.4727 -3.6504 19 9 6.2074 -3.5681 -4.9954 20 9 5.7607 -4.7541 -3.0937 21 6 6.8723 -2.6431 -2.8893 22 6 6.4278 -2.4909 -1.4328 23 6 2.2538 -1.0922 -0.0005 24 16 1.7194 -2.7187 -0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 4.6883 3.9584 -0.1930 29 1 5.5394 -1.0380 0.5132 30 1 4.4914 -2.4767 0.5125 31 1 4.0325 -3.6158 -1.6046 32 1 3.1287 -2.1321 -1.9913 33 1 4.5171 -1.8057 -4.0147 34 1 3.7175 -3.3960 -4.0498 35 1 6.9583 -1.6581 -3.3483 36 1 7.8383 -3.1465 -2.9244 37 1 7.1575 -1.8886 -0.8916 38 1 6.3553 -3.4754 -0.9708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794686621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:44 Heat of formation + Delta-G solvation = -32.371397 kcal Electronic energy + Delta-G solvation = -25423.315538 eV Core-core repulsion = 21484.549175 eV Total energy + Delta-G solvation = -3938.766362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.04508 -48.04896 -42.67702 -39.70922 -36.31661 -35.65622 -33.66016 -32.43802 -31.95364 -29.29578 -28.29937 -26.55667 -24.71185 -24.32632 -23.01069 -22.64652 -21.16771 -19.51431 -18.60198 -18.41416 -18.00165 -17.46910 -17.33277 -17.23574 -16.62085 -16.52391 -16.20549 -15.81327 -15.25764 -15.00461 -14.80130 -14.38633 -14.21499 -13.93401 -13.75400 -13.69918 -13.50739 -13.44827 -13.27634 -13.03766 -12.86513 -12.64259 -12.50795 -12.41861 -12.34047 -11.98998 -11.74847 -11.41188 -11.34832 -10.90878 -10.63778 -9.61785 -8.78915 -8.63263 -8.54264 -6.95266 0.49459 0.76836 1.29605 1.46642 1.61935 1.62633 1.87075 2.13197 2.39142 2.63707 2.74554 3.02810 3.10039 3.27084 3.39360 3.59322 3.85741 4.03886 4.05698 4.16504 4.21272 4.39302 4.44997 4.45144 4.50374 4.59361 4.70794 4.72919 4.81236 4.88010 4.91483 4.99631 5.11454 5.26958 5.62455 5.72130 5.90800 6.10312 6.48376 6.58547 7.33139 8.25881 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.004385 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.138260 B = 6383.432278 C = 7408.732375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.515 5.515 3 C 0.351 3.649 4 C -0.452 4.452 5 H 0.118 0.882 6 C 0.037 3.963 7 N -0.772 5.772 8 Si 1.003 2.997 9 H -0.261 1.261 10 H -0.273 1.273 11 H -0.248 1.248 12 N -0.361 5.361 13 N -0.369 5.369 14 C 0.322 3.678 15 N -0.557 5.557 16 C 0.071 3.929 17 C -0.149 4.149 18 C 0.286 3.714 19 F -0.207 7.207 20 F -0.208 7.208 21 C -0.142 4.142 22 C 0.061 3.939 23 C 0.454 3.546 24 S -0.735 6.735 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.292 0.708 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -1.231 -3.518 5.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.215 5.215 3 C 0.103 3.897 4 C -0.493 4.493 5 H 0.136 0.864 6 C -0.186 4.186 7 N -0.397 5.397 8 Si 0.823 3.177 9 H -0.186 1.186 10 H -0.198 1.198 11 H -0.171 1.171 12 N -0.194 5.194 13 N -0.155 5.155 14 C 0.111 3.889 15 N -0.284 5.284 16 C -0.057 4.057 17 C -0.188 4.188 18 C 0.250 3.750 19 F -0.188 7.188 20 F -0.189 7.189 21 C -0.180 4.180 22 C -0.066 4.066 23 C 0.082 3.918 24 S -0.611 6.611 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.933 -1.454 -3.779 6.381 hybrid contribution -0.830 0.170 0.215 0.874 sum 4.103 -1.283 -3.564 5.584 Atomic orbital electron populations 1.22041 0.73123 1.05272 1.04273 1.46271 1.09678 1.04154 1.61439 1.21713 0.84402 0.89429 0.94174 1.18895 0.97229 0.85448 1.47773 0.86443 1.26843 0.94079 1.05919 0.91785 1.69967 1.03164 1.36865 1.29703 0.84839 0.79671 0.73951 0.79277 1.18593 1.19757 1.17094 1.79348 1.14831 0.83181 1.42004 1.49475 1.03816 1.06999 1.55185 1.21863 0.84571 0.91973 0.90450 1.61891 1.04002 1.47539 1.15008 1.22070 0.95042 0.96234 0.92356 1.22548 0.95137 1.02783 0.98289 1.21292 0.97793 0.80037 0.75904 1.92984 1.92949 1.96568 1.36253 1.92980 1.97469 1.43117 1.85330 1.22554 0.98312 1.01919 0.95260 1.22077 0.89411 0.98621 0.96539 1.22964 0.85537 0.92463 0.90791 1.92744 1.85682 0.99678 1.83019 0.90098 0.89193 0.87497 0.89720 0.86240 0.90639 0.93832 0.91745 0.88469 0.89002 0.87499 0.86231 0.86777 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.17 10.66 127.77 1.36 4.53 16 2 N -0.51 -22.52 3.17 -548.29 -1.74 -24.26 16 3 C 0.35 16.79 7.50 133.52 1.00 17.79 16 4 C -0.45 -20.07 8.99 23.16 0.21 -19.86 16 5 H 0.12 4.55 7.08 -2.91 -0.02 4.53 16 6 C 0.04 1.59 5.49 85.28 0.47 2.06 16 7 N -0.77 -36.25 11.93 21.84 0.26 -35.99 16 8 Si 1.00 31.72 29.57 68.60 2.03 33.75 16 9 H -0.26 -8.01 7.11 99.48 0.71 -7.30 16 10 H -0.27 -8.57 7.11 99.48 0.71 -7.87 16 11 H -0.25 -7.35 7.11 99.48 0.71 -6.64 16 12 N -0.36 -18.04 10.79 -55.17 -0.60 -18.64 16 13 N -0.37 -16.56 3.57 -359.72 -1.28 -17.84 16 14 C 0.32 11.76 5.98 170.81 1.02 12.78 16 15 N -0.56 -18.31 4.80 -908.72 -4.36 -22.67 16 16 C 0.07 2.51 4.20 86.33 0.36 2.87 16 17 C -0.15 -4.41 5.62 30.65 0.17 -4.24 16 18 C 0.29 7.57 2.12 30.67 0.06 7.63 16 19 F -0.21 -5.62 17.07 44.97 0.77 -4.85 16 20 F -0.21 -6.05 16.23 44.97 0.73 -5.32 16 21 C -0.14 -3.06 5.62 30.65 0.17 -2.89 16 22 C 0.06 1.45 5.35 86.33 0.46 1.92 16 23 C 0.45 20.82 6.58 179.06 1.18 22.00 16 24 S -0.74 -34.47 27.20 -56.49 -1.54 -36.01 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.09 3.01 7.61 -2.39 -0.02 2.99 16 27 H 0.11 3.05 7.27 -2.39 -0.02 3.03 16 28 H 0.29 12.37 8.30 -92.71 -0.77 11.60 16 29 H 0.12 3.97 7.99 -2.39 -0.02 3.95 16 30 H 0.08 2.77 7.63 -2.39 -0.02 2.75 16 31 H 0.04 1.63 7.83 -2.38 -0.02 1.61 16 32 H 0.06 2.75 5.14 -2.39 -0.01 2.74 16 33 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 35 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.11 2.25 8.02 -2.39 -0.02 2.23 16 38 H 0.05 1.23 7.88 -2.39 -0.02 1.21 16 Total: -1.00 -62.14 329.19 1.84 -60.30 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 1.09 Total: 26.95 kcal Atomic # 6 Polarization: 38.11 SS G_CDS: 6.47 Total: 44.59 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -7.71 Total: -119.40 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 1.50 Total: -10.18 kcal Atomic # 14 Polarization: 31.72 SS G_CDS: 2.03 Total: 33.75 kcal Atomic # 16 Polarization: -34.47 SS G_CDS: -1.54 Total: -36.01 kcal Total: -62.14 1.84 -60.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794686621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.932 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds