Wall clock time and date at job start Tue Mar 31 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38765 * 119.89074 * 2 1 4 4 C 1.37291 * 120.32814 * 180.32179 * 3 2 1 5 5 C 1.40678 * 120.28275 * 359.68058 * 4 3 2 6 6 C 1.46412 * 129.78030 * 180.02562 * 5 4 3 7 7 C 1.46650 * 123.04502 * 359.94345 * 6 5 4 8 8 O 1.21611 * 119.99817 * 359.97438 * 7 6 5 9 9 O 1.34858 * 119.99917 * 180.02562 * 7 6 5 10 10 C 1.45200 * 117.00080 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47039 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47227 * 299.99998 * 11 10 9 13 13 C 1.53006 * 109.47350 * 60.00082 * 11 10 9 14 14 C 1.50704 * 109.46930 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99789 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99775 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00351 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99821 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47078 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47019 * 120.00372 * 18 16 14 21 21 H 1.48495 * 109.47110 * 240.00051 * 18 16 14 22 22 C 1.34013 * 113.90579 * 179.97438 * 6 5 4 23 23 S 1.70025 * 112.23325 * 359.97438 * 22 6 5 24 24 C 1.39420 * 119.17103 * 0.02562 * 5 4 3 25 25 C 1.37492 * 119.89800 * 179.70479 * 2 1 3 26 26 H 1.09002 * 109.47023 * 270.28950 * 1 2 3 27 27 H 1.09001 * 109.47381 * 30.29475 * 1 2 3 28 28 H 1.09004 * 109.46893 * 150.30005 * 1 2 3 29 29 H 1.07998 * 119.83731 * 359.97438 * 3 2 1 30 30 H 1.07995 * 119.85760 * 179.70997 * 4 3 2 31 31 H 1.09000 * 109.46914 * 299.99955 * 10 9 7 32 32 H 1.08998 * 109.47101 * 59.99270 * 10 9 7 33 33 H 1.09001 * 109.46811 * 60.00019 * 12 11 10 34 34 H 1.09005 * 109.46678 * 179.97438 * 12 11 10 35 35 H 1.08994 * 109.46929 * 300.00008 * 12 11 10 36 36 H 1.09000 * 109.47088 * 59.99592 * 13 11 10 37 37 H 1.08995 * 109.47154 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.46653 * 299.99965 * 13 11 10 39 39 H 0.96999 * 120.00579 * 180.02562 * 17 16 14 40 40 H 1.08003 * 123.88470 * 179.97438 * 22 6 5 41 41 H 1.08002 * 119.84988 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.2031 0.0000 4 6 3.5714 1.2135 -0.0067 5 6 4.2900 0.0042 -0.0068 6 6 5.7359 -0.2264 -0.0126 7 6 6.7191 0.8617 -0.0210 8 8 6.3454 2.0189 -0.0238 9 8 8.0377 0.5788 -0.0265 10 6 8.9535 1.7056 -0.0353 11 6 10.3945 1.1914 -0.0400 12 6 10.6383 0.3457 1.2115 13 6 10.6267 0.3358 -1.2870 14 6 11.3450 2.3609 -0.0497 15 1 10.9598 3.3698 -0.0518 16 6 12.7064 2.1426 -0.0548 17 7 13.1755 0.9140 -0.0517 18 14 13.8846 3.5922 -0.0660 19 1 13.1104 4.8593 -0.0673 20 1 14.7455 3.5398 1.1429 21 1 14.7347 3.5296 -1.2820 22 6 6.0793 -1.5217 -0.0103 23 16 4.7228 -2.5468 -0.0004 24 6 3.5907 -1.2019 -0.0006 25 6 2.1923 -1.1919 0.0061 26 1 -0.3633 0.0052 1.0277 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3633 -0.8927 -0.5092 29 1 1.6541 2.1358 -0.0004 30 1 4.1018 2.1542 -0.0113 31 1 8.7795 2.3083 -0.9266 32 1 8.7884 2.3149 0.8533 33 1 9.9508 -0.5001 1.2180 34 1 11.6649 -0.0210 1.2078 35 1 10.4730 0.9552 2.0998 36 1 10.4529 0.9383 -2.1786 37 1 11.6534 -0.0301 -1.2906 38 1 9.9392 -0.5100 -1.2804 39 1 14.1332 0.7604 -0.0549 40 1 7.1002 -1.8741 -0.0142 41 1 1.6482 -2.1248 0.0114 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796841724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:11 Heat of formation + Delta-G solvation = -57.460268 kcal Electronic energy + Delta-G solvation = -23584.977392 eV Core-core repulsion = 20134.767122 eV Total energy + Delta-G solvation = -3450.210270 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32659 -39.30342 -36.65227 -35.66595 -34.83078 -31.77276 -31.26197 -30.94941 -26.86759 -26.21581 -25.63828 -25.28084 -24.32983 -22.71209 -21.83760 -19.84341 -18.85893 -17.93794 -17.23086 -16.25619 -15.84604 -15.79724 -15.55598 -15.07649 -14.70478 -14.57688 -14.30152 -13.80330 -13.43280 -13.19483 -12.87944 -12.80092 -12.71540 -12.50323 -12.06404 -11.84059 -11.71813 -11.51462 -11.20773 -11.18536 -10.98657 -10.83240 -10.68421 -10.43877 -10.22704 -10.06131 -9.91031 -9.78092 -9.42561 -9.33102 -8.76821 -8.65978 -8.39419 -7.90314 -6.03515 -4.14938 0.40266 1.00251 1.23253 1.51480 1.70523 3.08407 3.19043 3.26048 3.34637 3.39904 3.59515 4.37299 4.38700 4.60541 4.67285 4.93041 5.02851 5.19319 5.23129 5.29663 5.32219 5.45082 5.49497 5.60262 5.72064 5.90680 6.01830 6.08285 6.09730 6.26385 6.35414 6.45593 6.67385 6.74501 6.96506 7.02844 7.11372 7.13093 7.38593 7.60383 7.68883 8.03330 8.12877 8.22852 8.37801 8.85196 9.50689 10.97816 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.002793 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.148064 B =10023.574330 C =10812.348792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.117 4.117 4 C -0.066 4.066 5 C -0.044 4.044 6 C -0.124 4.124 7 C 0.517 3.483 8 O -0.513 6.513 9 O -0.344 6.344 10 C 0.086 3.914 11 C 0.070 3.930 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.068 3.932 17 N -0.882 5.882 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.157 4.157 23 S 0.174 5.826 24 C -0.158 4.158 25 C -0.084 4.084 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.084 0.916 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.187 0.813 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.085 -7.263 0.143 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.085 4.085 5 C -0.050 4.050 6 C -0.140 4.140 7 C 0.360 3.640 8 O -0.404 6.404 9 O -0.260 6.260 10 C 0.013 3.987 11 C 0.070 3.930 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.293 4.293 23 S 0.442 5.558 24 C -0.273 4.273 25 C -0.107 4.107 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.103 0.897 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.204 0.796 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.041 -8.617 0.145 23.666 hybrid contribution 1.107 2.489 -0.008 2.725 sum -20.934 -6.127 0.137 21.812 Atomic orbital electron populations 1.20792 0.90595 1.02988 1.02529 1.19797 0.96145 0.92610 0.99152 1.20951 0.93711 0.97769 1.01229 1.21263 0.93607 0.97515 0.96144 1.18680 0.90036 0.93616 1.02697 1.18902 0.91348 0.92252 1.11474 1.20294 0.82893 0.87461 0.73364 1.90772 1.81287 1.21845 1.46541 1.86591 1.15079 1.41703 1.82590 1.23714 0.88921 0.85313 1.00741 1.18255 0.85949 0.95052 0.93753 1.21775 1.02753 0.97338 0.96869 1.21776 1.02738 0.97330 0.96889 1.20973 0.90586 0.91847 1.51494 0.92415 1.24859 0.98045 0.95802 0.94676 1.69834 1.13139 1.18925 1.50164 0.86481 0.80889 0.82704 0.77611 1.19756 1.20956 1.20951 1.25339 1.05982 0.97059 1.00912 1.82944 0.92283 1.06165 1.74423 1.22703 0.98133 0.96765 1.09667 1.20229 0.90151 0.98201 1.02090 0.90935 0.91225 0.91423 0.85244 0.83785 0.92393 0.92400 0.96553 0.89691 0.95776 0.95780 0.89693 0.96553 0.92947 0.79599 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.00 36.01 0.36 -0.33 16 2 C -0.07 -0.70 5.87 -104.70 -0.61 -1.31 16 3 C -0.12 -1.24 9.67 -39.73 -0.38 -1.63 16 4 C -0.07 -0.89 9.59 -39.01 -0.37 -1.27 16 5 C -0.04 -0.63 6.03 -105.25 -0.63 -1.27 16 6 C -0.12 -1.97 5.94 -104.70 -0.62 -2.59 16 7 C 0.52 9.85 7.90 34.13 0.27 10.12 16 8 O -0.51 -10.60 14.69 -19.35 -0.28 -10.88 16 9 O -0.34 -7.02 8.43 -40.92 -0.35 -7.36 16 10 C 0.09 1.92 4.27 37.15 0.16 2.08 16 11 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 12 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 13 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 14 C -0.51 -13.66 8.01 -34.44 -0.28 -13.94 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 17 N -0.88 -23.93 9.35 55.43 0.52 -23.41 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.16 -2.08 10.33 29.25 0.30 -1.77 16 23 S 0.17 1.83 22.98 -107.50 -2.47 -0.64 16 24 C -0.16 -1.92 6.46 -38.54 -0.25 -2.17 16 25 C -0.08 -0.85 9.71 -39.25 -0.38 -1.23 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 28 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.14 2.12 6.45 -52.49 -0.34 1.78 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 38 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 39 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.19 2.31 7.92 -52.48 -0.42 1.90 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -29.25 352.95 -9.83 -39.08 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.52 Total: -0.33 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.02 Total: -17.60 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.52 Total: -23.41 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.63 Total: -18.25 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.47 Total: -0.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.25 -9.83 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796841724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.383 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds