Wall clock time and date at job start Tue Mar 31 2020 12:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38765 * 119.89074 * 2 1 4 4 C 1.37291 * 120.32814 * 180.32179 * 3 2 1 5 5 C 1.40678 * 120.28275 * 359.68058 * 4 3 2 6 6 C 1.46412 * 129.78030 * 180.02562 * 5 4 3 7 7 C 1.46650 * 123.04502 * 359.94345 * 6 5 4 8 8 O 1.21611 * 119.99817 * 359.97438 * 7 6 5 9 9 O 1.34858 * 119.99917 * 180.02562 * 7 6 5 10 10 C 1.45200 * 117.00080 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47039 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47227 * 299.99998 * 11 10 9 13 13 C 1.53006 * 109.47350 * 60.00082 * 11 10 9 14 14 C 1.50704 * 109.46930 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99789 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99775 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00351 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99821 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47078 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47019 * 120.00372 * 18 16 14 21 21 H 1.48495 * 109.47110 * 240.00051 * 18 16 14 22 22 C 1.34013 * 113.90579 * 179.97438 * 6 5 4 23 23 S 1.70025 * 112.23325 * 359.97438 * 22 6 5 24 24 C 1.39420 * 119.17103 * 0.02562 * 5 4 3 25 25 C 1.37492 * 119.89800 * 179.70479 * 2 1 3 26 26 H 1.09002 * 109.47023 * 270.28950 * 1 2 3 27 27 H 1.09001 * 109.47381 * 30.29475 * 1 2 3 28 28 H 1.09004 * 109.46893 * 150.30005 * 1 2 3 29 29 H 1.07998 * 119.83731 * 359.97438 * 3 2 1 30 30 H 1.07995 * 119.85760 * 179.70997 * 4 3 2 31 31 H 1.09000 * 109.46914 * 299.99955 * 10 9 7 32 32 H 1.08998 * 109.47101 * 59.99270 * 10 9 7 33 33 H 1.09001 * 109.46811 * 60.00019 * 12 11 10 34 34 H 1.09005 * 109.46678 * 179.97438 * 12 11 10 35 35 H 1.08994 * 109.46929 * 300.00008 * 12 11 10 36 36 H 1.09000 * 109.47088 * 59.99592 * 13 11 10 37 37 H 1.08995 * 109.47154 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.46653 * 299.99965 * 13 11 10 39 39 H 0.96999 * 120.00579 * 180.02562 * 17 16 14 40 40 H 1.08003 * 123.88470 * 179.97438 * 22 6 5 41 41 H 1.08002 * 119.84988 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.2031 0.0000 4 6 3.5714 1.2135 -0.0067 5 6 4.2900 0.0042 -0.0068 6 6 5.7359 -0.2264 -0.0126 7 6 6.7191 0.8617 -0.0210 8 8 6.3454 2.0189 -0.0238 9 8 8.0377 0.5788 -0.0265 10 6 8.9535 1.7056 -0.0353 11 6 10.3945 1.1914 -0.0400 12 6 10.6383 0.3457 1.2115 13 6 10.6267 0.3358 -1.2870 14 6 11.3450 2.3609 -0.0497 15 1 10.9598 3.3698 -0.0518 16 6 12.7064 2.1426 -0.0548 17 7 13.1755 0.9140 -0.0517 18 14 13.8846 3.5922 -0.0660 19 1 13.1104 4.8593 -0.0673 20 1 14.7455 3.5398 1.1429 21 1 14.7347 3.5296 -1.2820 22 6 6.0793 -1.5217 -0.0103 23 16 4.7228 -2.5468 -0.0004 24 6 3.5907 -1.2019 -0.0006 25 6 2.1923 -1.1919 0.0061 26 1 -0.3633 0.0052 1.0277 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3633 -0.8927 -0.5092 29 1 1.6541 2.1358 -0.0004 30 1 4.1018 2.1542 -0.0113 31 1 8.7795 2.3083 -0.9266 32 1 8.7884 2.3149 0.8533 33 1 9.9508 -0.5001 1.2180 34 1 11.6649 -0.0210 1.2078 35 1 10.4730 0.9552 2.0998 36 1 10.4529 0.9383 -2.1786 37 1 11.6534 -0.0301 -1.2906 38 1 9.9392 -0.5100 -1.2804 39 1 14.1332 0.7604 -0.0549 40 1 7.1002 -1.8741 -0.0142 41 1 1.6482 -2.1248 0.0114 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796841724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:10 Heat of formation + Delta-G solvation = -70.046587 kcal Electronic energy + Delta-G solvation = -23585.523176 eV Core-core repulsion = 20134.767122 eV Total energy + Delta-G solvation = -3450.756054 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63422 -40.43020 -38.31491 -36.71477 -36.61924 -33.31962 -32.49471 -31.85897 -27.99384 -27.60474 -27.48573 -27.25429 -25.71846 -23.65605 -22.83389 -21.14500 -20.72751 -18.89487 -18.65185 -17.77618 -17.52397 -17.39631 -16.71276 -16.52150 -15.96426 -15.52409 -15.25033 -15.01099 -14.69114 -14.67063 -14.61971 -13.87559 -13.73569 -13.65332 -13.34536 -13.23228 -13.07482 -12.86360 -12.76752 -12.62336 -12.57458 -12.36575 -12.15770 -12.04888 -11.77018 -11.71038 -11.60007 -11.32189 -11.20266 -10.76291 -10.70286 -10.42978 -9.51875 -8.78179 -8.07055 -6.25049 -0.62532 0.10257 0.33104 0.47662 0.72813 1.40669 1.43416 1.53281 1.74170 1.80892 2.43825 2.64607 3.16408 3.44361 3.75605 3.88711 3.94351 4.17324 4.22506 4.22634 4.28311 4.41985 4.52914 4.56745 4.61220 4.78774 4.86273 4.91015 4.97644 5.01358 5.12569 5.16287 5.19076 5.25947 5.31937 5.40304 5.50540 5.57000 5.60689 5.62582 5.89637 6.04644 6.14409 6.34369 6.67922 6.79991 7.42919 8.92972 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.002793 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.148064 B =10023.574330 C =10812.348792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.111 4.111 4 C -0.098 4.098 5 C -0.070 4.070 6 C -0.161 4.161 7 C 0.514 3.486 8 O -0.540 6.540 9 O -0.346 6.346 10 C 0.098 3.902 11 C 0.063 3.937 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.028 3.972 17 N -0.899 5.899 18 Si 0.953 3.047 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.157 4.157 23 S 0.259 5.741 24 C -0.177 4.177 25 C -0.082 4.082 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.192 0.808 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.471 -9.022 0.154 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.118 4.118 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.359 3.641 8 O -0.433 6.433 9 O -0.262 6.262 10 C 0.025 3.975 11 C 0.063 3.937 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.572 4.572 15 H 0.066 0.934 16 C -0.172 4.172 17 N -0.537 5.537 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.294 4.294 23 S 0.528 5.472 24 C -0.292 4.292 25 C -0.103 4.103 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.168 0.832 30 H 0.137 0.863 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.209 0.791 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -24.450 -10.396 0.156 26.569 hybrid contribution 1.704 2.936 -0.009 3.395 sum -22.746 -7.460 0.147 23.938 Atomic orbital electron populations 1.20873 0.87743 1.04351 1.03688 1.20232 0.98077 0.91785 0.97365 1.21250 0.92582 0.99599 0.99567 1.21222 0.95014 0.96594 0.99001 1.18776 0.89565 0.94964 1.04272 1.18823 0.91342 0.92030 1.15544 1.20940 0.82512 0.88329 0.72365 1.90748 1.81354 1.23190 1.48005 1.86566 1.15919 1.40568 1.83149 1.23307 0.88661 0.85656 0.99895 1.18267 0.86724 0.94681 0.94072 1.21630 1.01872 0.97675 0.96502 1.21631 1.01855 0.97667 0.96523 1.21213 0.91586 0.92157 1.52211 0.93352 1.25508 0.99276 0.98075 0.94322 1.69935 1.13492 1.20177 1.50116 0.85581 0.78901 0.79868 0.77722 1.19829 1.20457 1.20447 1.25615 1.07891 0.97059 0.98791 1.82602 0.89302 1.03420 1.71871 1.23038 0.99422 0.96704 1.10061 1.20685 0.89317 0.99836 1.00505 0.89687 0.90292 0.89746 0.83179 0.86297 0.93269 0.93276 0.94868 0.91594 0.96191 0.96197 0.91597 0.94867 0.92763 0.79099 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.00 71.24 0.71 -0.20 16 2 C -0.07 -1.15 5.87 -19.91 -0.12 -1.27 16 3 C -0.11 -2.25 9.67 22.17 0.21 -2.03 16 4 C -0.10 -2.78 9.59 22.64 0.22 -2.56 16 5 C -0.07 -2.04 6.03 -20.27 -0.12 -2.17 16 6 C -0.16 -5.21 5.94 -19.92 -0.12 -5.33 16 7 C 0.51 20.47 7.90 70.02 0.55 21.02 16 8 O -0.54 -23.78 14.69 19.48 0.29 -23.49 16 9 O -0.35 -14.52 8.43 -57.71 -0.49 -15.00 16 10 C 0.10 4.56 4.27 71.98 0.31 4.87 16 11 C 0.06 3.15 0.58 -52.93 -0.03 3.11 16 12 C -0.12 -5.80 8.11 71.98 0.58 -5.21 16 13 C -0.12 -5.80 8.11 71.98 0.58 -5.21 16 14 C -0.53 -29.13 8.01 25.60 0.21 -28.93 16 15 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 16 C 0.03 1.52 5.15 84.66 0.44 1.96 16 17 N -0.90 -49.14 9.35 21.45 0.20 -48.94 16 18 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C -0.16 -4.01 10.33 66.86 0.69 -3.32 16 23 S 0.26 4.75 22.98 -56.49 -1.30 3.45 16 24 C -0.18 -3.98 6.46 22.94 0.15 -3.83 16 25 C -0.08 -1.37 9.71 22.48 0.22 -1.15 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 28 H 0.08 0.46 8.08 -2.38 -0.02 0.44 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.12 3.85 6.45 -2.91 -0.02 3.83 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 34 H 0.07 3.46 6.07 -2.38 -0.01 3.45 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 38 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 39 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 40 H 0.19 4.56 7.92 -2.91 -0.02 4.53 16 41 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -64.82 352.95 6.25 -58.58 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.04 Total: 10.57 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 4.48 Total: -30.25 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.20 Total: -48.94 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.20 Total: -38.49 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.30 Total: 3.45 kcal Total: -64.82 6.25 -58.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796841724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.470 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds