Wall clock time and date at job start Tue Mar 31 2020 12:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28787 * 125.44748 * 2 1 4 4 N 1.28998 * 108.72027 * 180.02562 * 3 2 1 5 5 C 1.33310 * 107.35686 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.54940 * 179.97438 * 5 4 3 7 7 O 1.45204 * 109.47029 * 90.02493 * 6 5 4 8 8 C 1.34229 * 116.99680 * 180.02562 * 7 6 5 9 9 O 1.20820 * 120.00264 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99692 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47242 * 179.97438 * 10 8 7 12 12 C 1.38299 * 119.93217 * 269.72899 * 11 10 8 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47303 * 60.00249 * 20 18 16 22 22 H 1.48499 * 109.46956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47359 * 299.99968 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 N 1.28883 * 125.44837 * 180.33053 * 2 1 3 27 27 H 1.08997 * 109.47277 * 89.97717 * 1 2 3 28 28 H 1.09004 * 109.47587 * 209.97762 * 1 2 3 29 29 H 1.09007 * 109.47333 * 329.97691 * 1 2 3 30 30 H 1.09009 * 109.46929 * 330.02981 * 6 5 4 31 31 H 1.08992 * 109.47452 * 210.02953 * 6 5 4 32 32 H 1.09002 * 109.47056 * 59.99464 * 10 8 7 33 33 H 1.09001 * 109.46884 * 299.99951 * 10 8 7 34 34 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 35 35 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 36 36 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 38 38 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0492 0.0000 4 7 3.4473 0.6779 -0.0005 5 6 3.4619 -0.6551 -0.0003 6 6 4.6824 -1.5392 -0.0013 7 8 5.0753 -1.8234 1.3674 8 6 6.1534 -2.6037 1.5423 9 8 6.7493 -3.0345 0.5837 10 6 6.6205 -2.9423 2.9345 11 6 7.8393 -3.8251 2.8547 12 6 7.6946 -5.2001 2.8236 13 6 8.8092 -6.0115 2.7448 14 6 10.0770 -5.4457 2.7085 15 8 11.1749 -6.2410 2.6375 16 6 12.3665 -5.6276 2.4905 17 1 12.4257 -4.5495 2.5164 18 6 13.5159 -6.3808 2.3059 19 7 13.4438 -7.6940 2.2747 20 14 15.1668 -5.5308 2.1014 21 1 15.4594 -4.7204 3.3109 22 1 16.2301 -6.5517 1.9211 23 1 15.1234 -4.6449 0.9105 24 6 10.2193 -4.0648 2.7456 25 6 9.1005 -3.2585 2.8188 26 7 2.2125 -1.0499 -0.0061 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 5.4985 -1.0315 -0.5156 31 1 4.4543 -2.4730 -0.5152 32 1 5.8267 -3.4666 3.4666 33 1 6.8703 -2.0247 3.4672 34 1 6.7086 -5.6396 2.8570 35 1 8.6954 -7.0851 2.7161 36 1 14.2478 -8.2209 2.1451 37 1 11.2039 -3.6218 2.7180 38 1 9.2105 -2.1845 2.8480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799486832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:58 Heat of formation + Delta-G solvation = 50.873177 kcal Electronic energy + Delta-G solvation = -24457.494576 eV Core-core repulsion = 20497.981533 eV Total energy + Delta-G solvation = -3959.513042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.78995 -40.51019 -38.98248 -37.08192 -36.25974 -35.55001 -33.79303 -32.52229 -31.57342 -30.18045 -30.03738 -27.97897 -26.63310 -25.15586 -23.59144 -22.87526 -21.99665 -21.65740 -20.19283 -18.12708 -18.04614 -17.99048 -17.48222 -17.02330 -16.70497 -16.38821 -14.93231 -14.65261 -14.63620 -14.43702 -14.36573 -14.09899 -13.75752 -13.62680 -13.53868 -13.35141 -12.74695 -12.69922 -12.58939 -12.31058 -11.89988 -11.55466 -11.43817 -11.40235 -11.27426 -10.90705 -10.87671 -10.82282 -10.75493 -10.64913 -10.43788 -10.28412 -9.33685 -8.82394 -8.17123 -7.20478 -6.44698 -4.03273 0.73551 1.36303 1.52897 2.17765 2.24028 2.31257 2.83633 3.14349 3.16144 3.18403 3.48559 3.75784 3.97644 4.29133 4.31310 4.54300 4.60234 4.76813 4.93439 5.04663 5.08351 5.15995 5.21730 5.29817 5.30536 5.33937 5.62785 5.63765 5.71803 5.82784 6.20451 6.30207 6.40423 6.68979 6.89859 7.04369 7.21784 7.34113 7.43967 7.80207 7.83218 7.88977 8.00247 9.00738 9.70100 10.73039 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.034834 B = 0.001975 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.618526 B =14172.083843 C =14541.048245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.139 5.139 3 N -0.060 5.060 4 N -0.264 5.264 5 C 0.168 3.832 6 C 0.167 3.833 7 O -0.360 6.360 8 C 0.460 3.540 9 O -0.485 6.485 10 C -0.047 4.047 11 C -0.185 4.185 12 C -0.056 4.056 13 C -0.192 4.192 14 C 0.159 3.841 15 O -0.175 6.175 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.233 4.233 25 C -0.052 4.052 26 N -0.286 5.286 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.523 13.994 -2.183 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.051 5.051 3 N -0.054 5.054 4 N -0.136 5.136 5 C -0.114 4.114 6 C 0.090 3.910 7 O -0.277 6.277 8 C 0.302 3.698 9 O -0.370 6.370 10 C -0.085 4.085 11 C -0.186 4.186 12 C -0.074 4.074 13 C -0.211 4.211 14 C 0.105 3.895 15 O -0.078 6.078 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.253 4.253 25 C -0.070 4.070 26 N -0.139 5.139 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.527 13.955 -2.527 28.332 hybrid contribution 0.915 0.077 -0.338 0.979 sum -23.611 14.032 -2.866 27.615 Atomic orbital electron populations 1.22503 0.68751 1.07140 1.06234 1.50110 1.10917 1.00839 1.43276 1.79024 0.96349 1.14181 1.15810 1.75881 1.09956 1.10885 1.16875 1.24981 0.92484 0.90457 1.03525 1.20701 0.90074 0.97395 0.82830 1.86532 1.46498 1.64856 1.29788 1.24302 0.76830 0.74806 0.93870 1.90729 1.54237 1.49259 1.42736 1.20110 0.97575 1.01374 0.89422 1.18619 0.92300 0.93108 1.14597 1.20425 0.97101 0.92378 0.97517 1.20158 0.89960 0.99630 1.11379 1.19407 0.88299 0.89865 0.91907 1.83976 1.12555 1.33557 1.77742 1.21298 0.81485 0.92522 1.51522 0.89030 1.25300 0.99188 0.95579 0.96431 1.70030 1.29859 1.04421 1.45316 0.85774 0.79811 0.78582 0.79234 1.19481 1.20274 1.19452 1.21111 0.99132 0.93452 1.11563 1.20549 0.91692 0.98204 0.96588 1.74715 1.03194 1.15330 1.20655 0.87827 0.86876 0.86706 0.87570 0.87955 0.87652 0.87609 0.87150 0.86398 0.91940 0.85434 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.18 11.63 59.85 0.70 0.87 16 2 N -0.14 -1.15 4.40 -16.69 -0.07 -1.22 16 3 N -0.06 -0.64 13.25 60.35 0.80 0.16 16 4 N -0.26 -3.30 12.50 32.44 0.41 -2.90 16 5 C 0.17 1.95 8.01 -156.63 -1.25 0.70 16 6 C 0.17 1.87 6.09 36.01 0.22 2.09 16 7 O -0.36 -4.55 10.20 -39.26 -0.40 -4.95 16 8 C 0.46 6.48 7.95 36.01 0.29 6.77 16 9 O -0.49 -8.51 15.78 -18.74 -0.30 -8.81 16 10 C -0.05 -0.60 5.94 -29.03 -0.17 -0.77 16 11 C -0.19 -3.14 4.38 -104.57 -0.46 -3.60 16 12 C -0.06 -1.00 9.69 -39.61 -0.38 -1.39 16 13 C -0.19 -4.10 9.99 -39.40 -0.39 -4.50 16 14 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 15 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 16 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 20 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.23 -5.13 9.17 -39.40 -0.36 -5.50 16 25 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 26 N -0.29 -2.98 12.13 32.46 0.39 -2.59 16 27 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.11 0.05 8.14 -51.93 -0.42 -0.38 16 29 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.11 1.12 8.13 -51.92 -0.42 0.70 16 31 H 0.10 1.04 8.13 -51.93 -0.42 0.61 16 32 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -36.23 346.93 -4.40 -40.63 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.93 Total: 1.25 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -2.27 Total: -12.77 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 2.28 Total: -31.16 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.70 Total: -18.80 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.23 -4.40 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799486832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.501 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds