Wall clock time and date at job start Tue Mar 31 2020 12:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28787 * 125.44748 * 2 1 4 4 N 1.28998 * 108.72027 * 180.02562 * 3 2 1 5 5 C 1.33310 * 107.35686 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.54940 * 179.97438 * 5 4 3 7 7 O 1.45204 * 109.47029 * 90.02493 * 6 5 4 8 8 C 1.34229 * 116.99680 * 180.02562 * 7 6 5 9 9 O 1.20820 * 120.00264 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99692 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47242 * 179.97438 * 10 8 7 12 12 C 1.38299 * 119.93217 * 269.72899 * 11 10 8 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47303 * 60.00249 * 20 18 16 22 22 H 1.48499 * 109.46956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47359 * 299.99968 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 N 1.28883 * 125.44837 * 180.33053 * 2 1 3 27 27 H 1.08997 * 109.47277 * 89.97717 * 1 2 3 28 28 H 1.09004 * 109.47587 * 209.97762 * 1 2 3 29 29 H 1.09007 * 109.47333 * 329.97691 * 1 2 3 30 30 H 1.09009 * 109.46929 * 330.02981 * 6 5 4 31 31 H 1.08992 * 109.47452 * 210.02953 * 6 5 4 32 32 H 1.09002 * 109.47056 * 59.99464 * 10 8 7 33 33 H 1.09001 * 109.46884 * 299.99951 * 10 8 7 34 34 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 35 35 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 36 36 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 38 38 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0492 0.0000 4 7 3.4473 0.6779 -0.0005 5 6 3.4619 -0.6551 -0.0003 6 6 4.6824 -1.5392 -0.0013 7 8 5.0753 -1.8234 1.3674 8 6 6.1534 -2.6037 1.5423 9 8 6.7493 -3.0345 0.5837 10 6 6.6205 -2.9423 2.9345 11 6 7.8393 -3.8251 2.8547 12 6 7.6946 -5.2001 2.8236 13 6 8.8092 -6.0115 2.7448 14 6 10.0770 -5.4457 2.7085 15 8 11.1749 -6.2410 2.6375 16 6 12.3665 -5.6276 2.4905 17 1 12.4257 -4.5495 2.5164 18 6 13.5159 -6.3808 2.3059 19 7 13.4438 -7.6940 2.2747 20 14 15.1668 -5.5308 2.1014 21 1 15.4594 -4.7204 3.3109 22 1 16.2301 -6.5517 1.9211 23 1 15.1234 -4.6449 0.9105 24 6 10.2193 -4.0648 2.7456 25 6 9.1005 -3.2585 2.8188 26 7 2.2125 -1.0499 -0.0061 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 5.4985 -1.0315 -0.5156 31 1 4.4543 -2.4730 -0.5152 32 1 5.8267 -3.4666 3.4666 33 1 6.8703 -2.0247 3.4672 34 1 6.7086 -5.6396 2.8570 35 1 8.6954 -7.0851 2.7161 36 1 14.2478 -8.2209 2.1451 37 1 11.2039 -3.6218 2.7180 38 1 9.2105 -2.1845 2.8480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799486832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:57 Heat of formation + Delta-G solvation = 25.788980 kcal Electronic energy + Delta-G solvation = -24458.582308 eV Core-core repulsion = 20497.981533 eV Total energy + Delta-G solvation = -3960.600775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.53001 -41.64338 -40.67159 -38.54920 -37.57159 -36.22631 -34.58526 -34.40191 -33.03623 -31.78306 -30.70433 -28.86434 -27.99595 -26.99321 -24.26017 -23.73896 -23.63731 -22.90781 -21.56609 -19.84601 -18.94765 -18.89050 -18.67863 -18.35871 -17.71170 -17.43084 -16.40173 -16.35464 -15.94308 -15.69067 -15.49957 -15.18349 -15.09535 -14.63316 -14.44373 -14.37634 -14.11193 -14.01597 -13.59510 -13.57581 -13.06015 -12.95799 -12.86485 -12.49481 -12.33752 -12.27873 -12.22989 -12.15261 -12.13817 -11.85467 -11.67321 -11.27148 -11.17599 -10.77894 -9.76334 -8.94140 -8.46730 -6.14908 0.01071 0.46009 0.62273 0.73748 1.01333 1.22811 1.35178 1.45708 1.51493 1.85560 2.18433 2.66290 2.86964 3.05236 3.18555 3.51985 3.75850 3.88704 3.97461 4.04616 4.13460 4.20006 4.24369 4.31189 4.39537 4.45112 4.55873 4.59178 4.68234 4.69866 4.80527 5.05790 5.07943 5.14985 5.26937 5.32921 5.56046 5.72035 5.74777 6.03237 6.22195 6.74489 6.97760 7.12810 7.78238 8.76176 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.034834 B = 0.001975 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.618526 B =14172.083843 C =14541.048245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.121 5.121 3 N -0.072 5.072 4 N -0.295 5.295 5 C 0.156 3.844 6 C 0.166 3.834 7 O -0.355 6.355 8 C 0.470 3.530 9 O -0.527 6.527 10 C -0.046 4.046 11 C -0.159 4.159 12 C -0.051 4.051 13 C -0.206 4.206 14 C 0.116 3.884 15 O -0.232 6.232 16 C -0.415 4.415 17 H 0.101 0.899 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.260 1.260 24 C -0.245 4.245 25 C -0.055 4.055 26 N -0.292 5.292 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.114 0.886 36 H 0.273 0.727 37 H 0.119 0.881 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.538 16.595 -1.748 32.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.036 5.036 3 N -0.065 5.065 4 N -0.166 5.166 5 C -0.126 4.126 6 C 0.090 3.910 7 O -0.271 6.271 8 C 0.314 3.686 9 O -0.415 6.415 10 C -0.083 4.083 11 C -0.160 4.160 12 C -0.069 4.069 13 C -0.226 4.226 14 C 0.066 3.934 15 O -0.138 6.138 16 C -0.491 4.491 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.558 5.558 20 Si 0.838 3.162 21 H -0.180 1.180 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.265 4.265 25 C -0.073 4.073 26 N -0.146 5.146 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -27.625 16.617 -2.074 32.304 hybrid contribution 1.300 -0.549 -0.466 1.486 sum -26.325 16.068 -2.539 30.945 Atomic orbital electron populations 1.23169 0.65411 1.09222 1.08420 1.50676 1.12504 0.99783 1.40592 1.78948 0.96197 1.14866 1.16517 1.75836 1.11092 1.11493 1.18195 1.24988 0.92960 0.90310 1.04363 1.20800 0.90282 0.97895 0.82045 1.86500 1.45698 1.64183 1.30727 1.24375 0.76491 0.74034 0.93743 1.90744 1.55580 1.51009 1.44127 1.20245 0.96411 1.02387 0.89277 1.19160 0.93660 0.93457 1.09690 1.20914 0.97639 0.92792 0.95565 1.20450 0.90138 1.00254 1.11731 1.19986 0.88444 0.91096 0.93908 1.83939 1.13605 1.35236 1.81030 1.21788 0.82124 0.93239 1.51923 0.88133 1.26601 1.03304 0.96318 0.95856 1.70179 1.31067 1.06328 1.48229 0.84651 0.74170 0.77588 0.79824 1.17971 1.19543 1.18396 1.21236 1.00261 0.92904 1.12062 1.20976 0.91204 0.99723 0.95356 1.74685 1.03001 1.16075 1.20886 0.85498 0.85046 0.84463 0.87369 0.87063 0.83861 0.84267 0.83059 0.86771 0.91831 0.86333 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.04 11.63 127.77 1.49 1.53 16 2 N -0.12 -1.70 4.40 -206.73 -0.91 -2.61 16 3 N -0.07 -1.42 13.25 37.02 0.49 -0.93 16 4 N -0.29 -7.01 12.50 -51.27 -0.64 -7.65 16 5 C 0.16 3.36 8.01 138.56 1.11 4.47 16 6 C 0.17 3.41 6.09 71.24 0.43 3.84 16 7 O -0.36 -7.82 10.20 -51.41 -0.52 -8.34 16 8 C 0.47 11.49 7.95 71.24 0.57 12.06 16 9 O -0.53 -17.22 15.78 21.98 0.35 -16.87 16 10 C -0.05 -0.92 5.94 29.10 0.17 -0.75 16 11 C -0.16 -4.82 4.38 -19.83 -0.09 -4.91 16 12 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 13 C -0.21 -8.96 9.99 22.39 0.22 -8.74 16 14 C 0.12 5.93 6.65 22.58 0.15 6.08 16 15 O -0.23 -14.26 9.76 -22.74 -0.22 -14.48 16 16 C -0.41 -24.67 9.49 67.92 0.64 -24.03 16 17 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 18 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 19 N -0.92 -57.33 13.67 21.61 0.30 -57.03 16 20 Si 1.02 43.65 29.55 68.60 2.03 45.68 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C -0.25 -10.95 9.17 22.39 0.21 -10.75 16 25 C -0.05 -1.90 9.69 22.25 0.22 -1.68 16 26 N -0.29 -5.45 12.13 -51.20 -0.62 -6.07 16 27 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.14 -0.50 8.14 -2.38 -0.02 -0.52 16 30 H 0.11 2.15 8.13 -2.38 -0.02 2.13 16 31 H 0.11 2.06 8.13 -2.39 -0.02 2.04 16 32 H 0.14 1.93 8.08 -2.39 -0.02 1.91 16 33 H 0.14 2.01 8.08 -2.39 -0.02 2.00 16 34 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 37 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -85.59 346.93 7.16 -78.43 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.11 Total: 15.11 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 5.80 Total: -25.25 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -1.38 Total: -74.28 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.40 Total: -39.70 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -85.59 7.16 -78.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799486832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.222 kcal (2) G-P(sol) polarization free energy of solvation -85.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds