Wall clock time and date at job start Tue Mar 31 2020 11:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53000 * 109.47266 * 164.99831 * 18 17 14 20 20 H 1.09005 * 109.47130 * 59.99553 * 19 18 17 21 21 O 1.42900 * 109.47310 * 299.99750 * 19 18 17 22 22 C 1.50700 * 109.47180 * 179.97438 * 19 18 17 23 23 C 1.34515 * 125.78765 * 264.99821 * 22 19 18 24 24 C 1.41387 * 106.83961 * 180.02562 * 23 22 19 25 25 C 1.34521 * 106.84114 * 0.02562 * 24 23 22 26 26 O 1.34303 * 125.79050 * 84.69682 * 22 19 18 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 32 32 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 33 33 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 34 34 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 35 35 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 36 36 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 37 37 H 0.96702 * 113.99800 * 300.00126 * 21 19 18 38 38 H 1.07999 * 126.58481 * 0.03851 * 23 22 19 39 39 H 1.07995 * 126.58374 * 179.97438 * 24 23 22 40 40 H 1.07995 * 125.79440 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6577 -1.3310 -1.7337 20 1 6.9198 -0.8343 -0.7994 21 8 7.1582 -0.5696 -2.8345 22 6 7.2666 -2.7093 -1.7574 23 6 7.5981 -3.4415 -0.6788 24 6 8.1333 -4.6589 -1.1588 25 6 8.0973 -4.5976 -2.5022 26 8 7.5651 -3.4172 -2.8589 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.7089 1.1611 3.4845 31 1 0.7376 -2.1442 -1.9996 32 1 2.4629 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4711 34 1 5.0733 0.6551 -1.5281 35 1 4.7540 -2.0247 -1.0019 36 1 4.8736 -1.9405 -2.7759 37 1 6.9612 -0.9534 -3.7000 38 1 7.4783 -3.1546 0.3555 39 1 8.5012 -5.4801 -0.5618 40 1 8.4335 -5.3691 -3.1789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800915443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:17 Heat of formation + Delta-G solvation = -107.266061 kcal Electronic energy + Delta-G solvation = -25748.143392 eV Core-core repulsion = 21884.924118 eV Total energy + Delta-G solvation = -3863.219274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.77586 -37.95213 -36.67802 -36.16911 -35.27044 -34.32499 -33.21885 -32.63079 -30.86268 -29.10983 -27.30624 -25.53028 -25.20910 -23.30217 -21.95339 -20.89723 -20.70501 -18.97147 -18.16870 -17.37301 -17.01283 -16.48844 -16.37283 -16.08751 -15.64809 -15.49082 -14.92461 -14.48302 -14.23198 -13.56567 -13.44970 -13.25337 -13.02431 -12.90877 -12.75010 -12.54722 -12.02860 -11.87742 -11.72271 -11.68288 -11.53569 -11.39277 -11.24709 -11.00631 -10.88370 -10.54175 -10.45800 -10.25036 -10.11380 -10.09387 -9.42645 -9.17817 -8.68741 -8.51502 -7.99959 -6.12429 -4.21187 1.18990 1.51750 2.42603 2.70556 3.21422 3.29042 3.29888 3.47621 4.07547 4.18757 4.32061 4.36027 4.62161 4.80422 4.88668 4.95484 5.06280 5.18196 5.46479 5.54802 5.60115 5.63410 5.76671 5.87137 5.97311 6.13363 6.28588 6.30840 6.62901 6.85468 6.85938 6.88274 7.09198 7.18908 7.36172 7.50241 7.59705 7.75713 8.02297 8.22876 8.81439 9.45110 10.92578 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.004966 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.783591 B = 5636.503797 C = 7109.532445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.060 0.940 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.990 5.990 13 C 0.105 3.895 14 S 2.785 3.215 15 O -0.999 6.999 16 O -0.979 6.979 17 N -1.122 6.122 18 C 0.094 3.906 19 C 0.190 3.810 20 H 0.135 0.865 21 O -0.546 6.546 22 C -0.046 4.046 23 C -0.194 4.194 24 C -0.213 4.213 25 C -0.039 4.039 26 O -0.172 6.172 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.012 0.988 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.417 0.583 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.383 0.617 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.743 -9.420 -7.534 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.833 5.833 13 C -0.041 4.041 14 S 2.793 3.207 15 O -0.982 6.982 16 O -0.963 6.963 17 N -0.881 5.881 18 C -0.034 4.034 19 C 0.129 3.871 20 H 0.153 0.847 21 O -0.351 6.351 22 C -0.097 4.097 23 C -0.214 4.214 24 C -0.232 4.232 25 C -0.107 4.107 26 O -0.068 6.068 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.250 0.750 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.231 0.769 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 11.406 -8.463 -8.047 16.324 hybrid contribution 0.522 -1.125 1.307 1.802 sum 11.928 -9.588 -6.740 16.722 Atomic orbital electron populations 1.22055 0.97959 0.99648 1.00776 1.18738 0.91900 0.92786 0.80125 0.92278 1.21355 1.31959 1.13082 0.90153 0.91957 1.24929 0.94976 0.94949 0.98986 1.69882 1.36157 1.22506 1.23827 0.86536 0.79125 0.79329 0.82567 1.20690 1.19972 1.21192 1.57718 1.64363 1.21356 1.39844 1.21208 0.98998 0.82084 1.01830 1.01755 0.72465 0.73145 0.73301 1.93536 1.86007 1.76427 1.42273 1.93601 1.83476 1.32366 1.86824 1.55918 1.32291 1.14229 1.85638 1.21863 0.93162 0.84981 1.03375 1.20700 0.90815 0.82837 0.92706 0.84720 1.86586 1.79953 1.51610 1.16949 1.23211 1.05383 0.96429 0.84686 1.21691 1.04776 0.95060 0.99848 1.21866 1.06723 0.99940 0.94701 1.24075 1.02475 0.87657 0.96460 1.83973 1.62363 1.25964 1.34544 0.94894 0.88912 0.96872 0.92612 0.93794 0.93406 0.90151 0.74957 0.89931 0.90151 0.76865 0.82987 0.83314 0.78020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.39 2.62 -69.09 -0.18 6.21 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.53 -13.08 7.99 -34.44 -0.28 -13.35 16 5 H 0.06 1.49 7.33 -52.49 -0.38 1.10 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.95 11.32 55.43 0.63 -23.33 16 8 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -19.93 3.12 -115.85 -0.36 -20.29 16 13 C 0.11 1.82 9.28 59.85 0.56 2.37 16 14 S 2.78 53.23 6.09 -107.50 -0.66 52.58 16 15 O -1.00 -19.98 16.68 -57.17 -0.95 -20.93 16 16 O -0.98 -22.07 16.70 -57.17 -0.95 -23.02 16 17 N -1.12 -17.03 5.92 -10.61 -0.06 -17.10 16 18 C 0.09 1.21 5.89 -4.04 -0.02 1.19 16 19 C 0.19 2.16 3.51 -27.88 -0.10 2.06 16 20 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 21 O -0.55 -6.35 13.18 -39.81 -0.52 -6.87 16 22 C -0.05 -0.52 6.20 -35.62 -0.22 -0.75 16 23 C -0.19 -2.13 10.81 -39.70 -0.43 -2.56 16 24 C -0.21 -2.04 10.91 -39.70 -0.43 -2.48 16 25 C -0.04 -0.35 12.09 29.42 0.36 0.01 16 26 O -0.17 -1.92 10.52 1.12 0.01 -1.91 16 27 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 28 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.71 7.79 -51.92 -0.40 0.30 16 33 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 34 H 0.42 5.84 8.65 -34.47 -0.30 5.54 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.02 7.75 -51.93 -0.40 0.61 16 37 H 0.38 3.56 8.94 45.56 0.41 3.97 16 38 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -32.39 351.17 -7.73 -40.12 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.61 Total: 9.38 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -0.51 Total: -8.81 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.20 Total: -60.71 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -2.42 Total: -52.74 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.66 Total: 52.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.39 -7.73 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800915443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.146 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds