Wall clock time and date at job start Tue Mar 31 2020 11:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53000 * 109.47266 * 164.99831 * 18 17 14 20 20 H 1.09005 * 109.47130 * 59.99553 * 19 18 17 21 21 O 1.42900 * 109.47310 * 299.99750 * 19 18 17 22 22 C 1.50700 * 109.47180 * 179.97438 * 19 18 17 23 23 C 1.34515 * 125.78765 * 264.99821 * 22 19 18 24 24 C 1.41387 * 106.83961 * 180.02562 * 23 22 19 25 25 C 1.34521 * 106.84114 * 0.02562 * 24 23 22 26 26 O 1.34303 * 125.79050 * 84.69682 * 22 19 18 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 32 32 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 33 33 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 34 34 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 35 35 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 36 36 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 37 37 H 0.96702 * 113.99800 * 300.00126 * 21 19 18 38 38 H 1.07999 * 126.58481 * 0.03851 * 23 22 19 39 39 H 1.07995 * 126.58374 * 179.97438 * 24 23 22 40 40 H 1.07995 * 125.79440 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6577 -1.3310 -1.7337 20 1 6.9198 -0.8343 -0.7994 21 8 7.1582 -0.5696 -2.8345 22 6 7.2666 -2.7093 -1.7574 23 6 7.5981 -3.4415 -0.6788 24 6 8.1333 -4.6589 -1.1588 25 6 8.0973 -4.5976 -2.5022 26 8 7.5651 -3.4172 -2.8589 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.7089 1.1611 3.4845 31 1 0.7376 -2.1442 -1.9996 32 1 2.4629 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4711 34 1 5.0733 0.6551 -1.5281 35 1 4.7540 -2.0247 -1.0019 36 1 4.8736 -1.9405 -2.7759 37 1 6.9612 -0.9534 -3.7000 38 1 7.4783 -3.1546 0.3555 39 1 8.5012 -5.4801 -0.5618 40 1 8.4335 -5.3691 -3.1789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800915443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:16 Heat of formation + Delta-G solvation = -133.381466 kcal Electronic energy + Delta-G solvation = -25749.275841 eV Core-core repulsion = 21884.924118 eV Total energy + Delta-G solvation = -3864.351723 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.52961 -38.91575 -38.29332 -37.87461 -36.90773 -35.45460 -34.48962 -33.99104 -31.71258 -30.91821 -28.24354 -27.23284 -26.98660 -24.25822 -22.70765 -22.61684 -21.58658 -20.37102 -19.08627 -18.80438 -18.49502 -18.22490 -17.61350 -17.05186 -16.85311 -16.55210 -16.44328 -15.76235 -15.39255 -15.09753 -14.85350 -14.49945 -14.38281 -13.78909 -13.74850 -13.69242 -13.45030 -13.36208 -13.20972 -13.17126 -13.12992 -12.98248 -12.75344 -12.64008 -12.61235 -12.20448 -12.11546 -11.88427 -11.47891 -11.18175 -10.85481 -10.51047 -10.47123 -9.67488 -9.43830 -8.06807 -6.21605 -0.31565 0.73812 1.47418 1.49191 1.57746 1.68321 1.88421 2.11961 2.47634 2.62165 3.22020 3.31260 3.38938 3.61391 3.69901 4.00528 4.08199 4.15122 4.26997 4.48233 4.66714 4.70692 4.76741 4.80348 4.91468 4.98635 5.02241 5.04100 5.15956 5.16602 5.27341 5.58364 5.62646 5.68077 5.85684 6.04927 6.13501 6.15861 6.30790 6.58186 6.87746 7.48113 8.97840 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.004966 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.783591 B = 5636.503797 C = 7109.532445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.272 3.728 3 H 0.026 0.974 4 C -0.527 4.527 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.262 1.262 11 H -0.292 1.292 12 N -0.996 5.996 13 C 0.098 3.902 14 S 2.801 3.199 15 O -1.006 7.006 16 O -1.017 7.017 17 N -1.112 6.112 18 C 0.090 3.910 19 C 0.199 3.801 20 H 0.141 0.859 21 O -0.556 6.556 22 C -0.065 4.065 23 C -0.204 4.204 24 C -0.229 4.229 25 C -0.034 4.034 26 O -0.185 6.185 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.423 0.577 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.392 0.608 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.204 -11.658 -7.688 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.044 0.956 4 C -0.566 4.566 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.218 1.218 12 N -0.838 5.838 13 C -0.047 4.047 14 S 2.810 3.190 15 O -0.990 6.990 16 O -1.001 7.001 17 N -0.874 5.874 18 C -0.036 4.036 19 C 0.138 3.862 20 H 0.159 0.841 21 O -0.363 6.363 22 C -0.116 4.116 23 C -0.224 4.224 24 C -0.247 4.247 25 C -0.101 4.101 26 O -0.081 6.081 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.242 0.758 38 H 0.176 0.824 39 H 0.186 0.814 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 12.868 -10.723 -8.225 18.661 hybrid contribution 0.127 -0.490 1.276 1.373 sum 12.995 -11.213 -6.949 18.517 Atomic orbital electron populations 1.21949 0.98025 1.00043 0.99889 1.18412 0.91881 0.91505 0.81438 0.95641 1.21620 1.31489 1.13056 0.90441 0.90943 1.25695 0.95255 0.95578 1.01870 1.70025 1.37528 1.24021 1.24246 0.85555 0.79048 0.78056 0.78910 1.20388 1.18653 1.21768 1.57596 1.65123 1.22448 1.38591 1.21415 1.00461 0.80544 1.02310 1.01079 0.72960 0.71968 0.72979 1.93521 1.86525 1.76334 1.42586 1.93546 1.84503 1.34836 1.87256 1.55563 1.30837 1.15700 1.85336 1.22054 0.94405 0.83423 1.03753 1.20574 0.89460 0.83265 0.92901 0.84148 1.86564 1.80004 1.52060 1.17632 1.23128 1.06754 0.96609 0.85069 1.21971 1.04546 0.95698 1.00144 1.22192 1.07082 1.00132 0.95341 1.24870 1.00806 0.87261 0.97168 1.83968 1.62734 1.26774 1.34669 0.93735 0.91223 0.96346 0.92835 0.93070 0.90778 0.90276 0.74177 0.89645 0.89687 0.75833 0.82444 0.81401 0.74443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 8.97 71.98 0.65 -5.97 16 2 C 0.27 13.06 2.62 44.24 0.12 13.18 16 3 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 4 C -0.53 -25.87 7.99 25.60 0.20 -25.66 16 5 H 0.07 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -50.39 11.32 21.45 0.24 -50.15 16 8 Si 0.96 40.29 29.54 68.60 2.03 42.31 16 9 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 N -1.00 -39.37 3.12 -520.45 -1.62 -41.00 16 13 C 0.10 3.21 9.28 127.77 1.19 4.40 16 14 S 2.80 105.81 6.09 -56.49 -0.34 105.47 16 15 O -1.01 -39.03 16.68 -128.00 -2.14 -41.17 16 16 O -1.02 -46.58 16.70 -128.00 -2.14 -48.72 16 17 N -1.11 -32.77 5.92 -187.50 -1.11 -33.88 16 18 C 0.09 2.19 5.89 86.38 0.51 2.70 16 19 C 0.20 4.23 3.51 29.85 0.10 4.33 16 20 H 0.14 2.76 8.14 -2.38 -0.02 2.74 16 21 O -0.56 -12.22 13.18 -144.60 -1.91 -14.13 16 22 C -0.06 -1.37 6.20 24.83 0.15 -1.22 16 23 C -0.20 -4.10 10.81 22.19 0.24 -3.86 16 24 C -0.23 -3.81 10.91 22.19 0.24 -3.57 16 25 C -0.03 -0.52 12.09 66.97 0.81 0.29 16 26 O -0.18 -3.74 10.52 1.87 0.02 -3.72 16 27 H 0.04 1.94 7.67 -2.39 -0.02 1.92 16 28 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 29 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.01 7.79 -2.38 -0.02 1.99 16 33 H 0.08 2.61 7.02 -2.39 -0.02 2.59 16 34 H 0.42 11.60 8.65 -96.75 -0.84 10.76 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.99 7.75 -2.39 -0.02 1.97 16 37 H 0.39 6.79 8.94 -74.06 -0.66 6.13 16 38 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.24 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -68.47 351.17 -2.73 -71.20 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.42 Total: 27.91 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.66 Total: -14.13 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -2.49 Total: -125.03 kcal Atomic # 8 Polarization: -101.58 SS G_CDS: -6.16 Total: -107.74 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: 105.81 SS G_CDS: -0.34 Total: 105.47 kcal Total: -68.47 -2.73 -71.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800915443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.179 kcal (2) G-P(sol) polarization free energy of solvation -68.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds