Wall clock time and date at job start Tue Mar 31 2020 11:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34750 * 117.00035 * 2 1 4 4 O 1.21511 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.47403 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.39659 * 120.48383 * 359.97438 * 5 3 2 7 7 N 1.31630 * 120.51502 * 180.02562 * 6 5 3 8 8 C 1.32641 * 121.63814 * 0.02562 * 7 6 5 9 9 N 1.38432 * 119.53205 * 180.02562 * 8 7 6 10 10 C 1.46500 * 120.00218 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46998 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46866 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00305 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46901 * 89.99815 * 16 14 12 18 18 H 1.48488 * 109.47487 * 210.00255 * 16 14 12 19 19 H 1.48503 * 109.47026 * 330.00635 * 16 14 12 20 20 C 1.39373 * 120.93974 * 0.27351 * 8 7 6 21 21 C 1.36876 * 119.38180 * 359.43148 * 20 8 7 22 22 C 1.50702 * 120.75423 * 180.28044 * 21 20 8 23 23 F 1.39897 * 109.47251 * 0.27718 * 22 21 20 24 24 F 1.39897 * 109.46872 * 120.27867 * 22 21 20 25 25 F 1.39906 * 109.46684 * 240.27918 * 22 21 20 26 26 H 1.09000 * 109.47741 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47286 * 299.99694 * 1 2 3 28 28 H 1.09002 * 109.47430 * 60.00037 * 1 2 3 29 29 H 1.08003 * 119.74246 * 0.02562 * 6 5 3 30 30 H 0.97010 * 119.99873 * 0.02562 * 9 8 7 31 31 H 1.09000 * 109.47175 * 60.00014 * 10 9 8 32 32 H 1.09001 * 109.47297 * 299.99521 * 10 9 8 33 33 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 34 34 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 35 35 H 0.97002 * 120.00008 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.30943 * 179.72221 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 -0.0006 6 6 4.3062 0.1129 -0.0006 7 7 5.6208 0.1811 -0.0006 8 6 6.2571 1.3449 -0.0001 9 7 7.6413 1.3657 -0.0006 10 6 8.3547 2.6453 0.0005 11 6 9.8630 2.3883 0.0002 12 6 10.5968 3.7045 0.0020 13 1 10.0428 4.6316 0.0028 14 6 11.9754 3.7253 0.0015 15 7 12.6157 4.8740 0.0026 16 14 12.9336 2.1218 -0.0006 17 1 13.1870 1.6985 -1.4012 18 1 14.2285 2.3180 0.6992 19 1 12.1469 1.0741 0.6985 20 6 5.5521 2.5471 0.0062 21 6 4.1835 2.5231 0.0001 22 6 3.3903 3.8044 0.0002 23 9 4.2662 4.8952 0.0008 24 9 2.5844 3.8541 -1.1423 25 9 2.5837 3.8533 1.1424 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.8197 -0.8513 -0.0006 30 1 8.1389 0.5330 -0.0018 31 1 8.0832 3.2119 0.8912 32 1 8.0825 3.2138 -0.8888 33 1 10.1348 1.8199 0.8896 34 1 10.1348 1.8215 -0.8903 35 1 13.5856 4.8886 0.0027 36 1 6.0806 3.4889 0.0111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804610537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:28 Heat of formation + Delta-G solvation = -193.155810 kcal Electronic energy + Delta-G solvation = -26604.140595 eV Core-core repulsion = 22059.896170 eV Total energy + Delta-G solvation = -4544.244425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05066 -47.59892 -47.43794 -41.06139 -39.97100 -36.79550 -36.37779 -33.68813 -33.17484 -31.44291 -29.72961 -27.79601 -26.74492 -25.54911 -23.52355 -22.83134 -21.34979 -20.94906 -18.97292 -18.42706 -18.36973 -17.90754 -17.47620 -17.03764 -16.58759 -16.39455 -15.82620 -15.11016 -15.04426 -14.41446 -14.39297 -14.31502 -14.12260 -14.00338 -13.97979 -13.82521 -13.63107 -13.61962 -13.24694 -12.92730 -12.71831 -12.39413 -12.25957 -11.71974 -11.59928 -11.01897 -10.86669 -10.85203 -10.52580 -10.38138 -10.10436 -9.95877 -9.82909 -9.51232 -8.74285 -7.94957 -6.23776 -4.26027 0.31519 0.79838 2.37836 2.38317 2.57328 3.02609 3.17440 3.25937 3.26470 3.48478 3.64177 3.97816 4.26826 4.41780 4.44375 4.46362 4.71436 4.74563 4.86779 4.94974 5.09056 5.16335 5.25687 5.37239 5.58832 5.64053 5.79296 6.03442 6.11028 6.20277 6.60813 6.92575 6.99236 7.38310 7.48790 7.52623 7.83318 8.27250 8.77817 9.35432 10.88697 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.003076 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.483037 B = 9100.596702 C =10144.667531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.516 3.484 4 O -0.500 6.500 5 C -0.234 4.234 6 C 0.228 3.772 7 N -0.542 5.542 8 C 0.444 3.556 9 N -0.689 5.689 10 C 0.121 3.879 11 C -0.021 4.021 12 C -0.529 4.529 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.894 5.894 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.201 4.201 21 C -0.033 4.033 22 C 0.515 3.485 23 F -0.176 7.176 24 F -0.164 7.164 25 F -0.164 7.164 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.179 0.821 30 H 0.411 0.589 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.267 0.733 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.346 -10.208 0.014 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.360 3.640 4 O -0.388 6.388 5 C -0.241 4.241 6 C 0.066 3.934 7 N -0.260 5.260 8 C 0.203 3.797 9 N -0.313 5.313 10 C -0.001 4.001 11 C -0.058 4.058 12 C -0.567 4.567 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.531 5.531 16 Si 0.708 3.292 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.227 4.227 21 C -0.042 4.042 22 C 0.460 3.540 23 F -0.157 7.157 24 F -0.145 7.145 25 F -0.145 7.145 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.196 0.804 30 H 0.247 0.753 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.713 -10.300 0.016 23.133 hybrid contribution 0.066 -0.027 -0.022 0.075 sum -20.647 -10.328 -0.005 23.086 Atomic orbital electron populations 1.23272 0.75752 1.03670 1.02770 1.86497 1.23691 1.32258 1.84694 1.20663 0.88354 0.81793 0.73161 1.90923 1.66649 1.35454 1.45791 1.19246 0.90627 0.94157 1.20083 1.22869 0.87469 0.97430 0.85656 1.67449 1.10490 1.26413 1.21697 1.18618 0.86517 0.88465 0.86092 1.45355 1.01151 1.11768 1.73044 1.21932 0.94318 0.82102 1.01739 1.19777 0.89414 0.99231 0.97418 1.20822 0.91597 0.91656 1.52672 0.90481 1.24976 0.97681 0.96290 0.94100 1.69887 1.08581 1.25023 1.49657 0.86767 0.79655 0.84130 0.78639 1.20117 1.21135 1.19039 1.21084 0.92384 1.00360 1.08825 1.19859 0.94066 0.91917 0.98325 1.17872 0.77778 0.83305 0.75012 1.93203 1.69029 1.57192 1.96285 1.93227 1.74284 1.96571 1.50393 1.93230 1.74249 1.96574 1.50425 0.87978 0.91759 0.91767 0.80427 0.75261 0.91162 0.91181 0.95598 0.96036 0.92348 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.53 9.83 -40.63 -0.40 -3.93 16 3 C 0.52 6.47 7.74 34.46 0.27 6.74 16 4 O -0.50 -7.38 11.32 -19.27 -0.22 -7.60 16 5 C -0.23 -2.94 5.87 -104.83 -0.62 -3.55 16 6 C 0.23 2.55 10.79 -17.11 -0.18 2.36 16 7 N -0.54 -7.06 10.38 -12.13 -0.13 -7.19 16 8 C 0.44 6.17 7.63 -155.28 -1.19 4.98 16 9 N -0.69 -9.85 5.71 -60.45 -0.34 -10.20 16 10 C 0.12 2.01 4.81 -4.04 -0.02 1.99 16 11 C -0.02 -0.42 4.16 -27.88 -0.12 -0.54 16 12 C -0.53 -13.69 9.66 -34.44 -0.33 -14.02 16 13 H 0.08 2.14 7.99 -52.48 -0.42 1.72 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 16 Si 0.88 20.11 27.47 -169.99 -4.67 15.44 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 20 C -0.20 -2.74 8.65 -39.65 -0.34 -3.09 16 21 C -0.03 -0.45 5.39 -104.31 -0.56 -1.01 16 22 C 0.51 7.43 2.78 36.01 0.10 7.53 16 23 F -0.18 -2.50 16.05 2.25 0.04 -2.46 16 24 F -0.16 -2.48 15.13 2.25 0.03 -2.44 16 25 F -0.16 -2.48 15.13 2.25 0.03 -2.44 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.18 1.43 7.61 -52.48 -0.40 1.03 16 30 H 0.41 5.50 8.59 -40.82 -0.35 5.15 16 31 H 0.07 1.16 7.90 -51.93 -0.41 0.74 16 32 H 0.07 1.15 7.92 -51.93 -0.41 0.74 16 33 H 0.03 0.53 7.20 -51.93 -0.37 0.16 16 34 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.16 2.12 5.82 -52.49 -0.31 1.82 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -30.03 322.56 -5.54 -35.56 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -3.50 Total: 1.05 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.02 Total: 4.60 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.30 Total: -42.64 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.62 Total: -11.53 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.10 Total: -7.35 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.03 -5.54 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804610537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.593 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds