Wall clock time and date at job start Tue Mar 31 2020 11:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34750 * 117.00035 * 2 1 4 4 O 1.21511 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.47403 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.39659 * 120.48383 * 359.97438 * 5 3 2 7 7 N 1.31630 * 120.51502 * 180.02562 * 6 5 3 8 8 C 1.32641 * 121.63814 * 0.02562 * 7 6 5 9 9 N 1.38432 * 119.53205 * 180.02562 * 8 7 6 10 10 C 1.46500 * 120.00218 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46998 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46866 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00305 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46901 * 89.99815 * 16 14 12 18 18 H 1.48488 * 109.47487 * 210.00255 * 16 14 12 19 19 H 1.48503 * 109.47026 * 330.00635 * 16 14 12 20 20 C 1.39373 * 120.93974 * 0.27351 * 8 7 6 21 21 C 1.36876 * 119.38180 * 359.43148 * 20 8 7 22 22 C 1.50702 * 120.75423 * 180.28044 * 21 20 8 23 23 F 1.39897 * 109.47251 * 0.27718 * 22 21 20 24 24 F 1.39897 * 109.46872 * 120.27867 * 22 21 20 25 25 F 1.39906 * 109.46684 * 240.27918 * 22 21 20 26 26 H 1.09000 * 109.47741 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47286 * 299.99694 * 1 2 3 28 28 H 1.09002 * 109.47430 * 60.00037 * 1 2 3 29 29 H 1.08003 * 119.74246 * 0.02562 * 6 5 3 30 30 H 0.97010 * 119.99873 * 0.02562 * 9 8 7 31 31 H 1.09000 * 109.47175 * 60.00014 * 10 9 8 32 32 H 1.09001 * 109.47297 * 299.99521 * 10 9 8 33 33 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 34 34 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 35 35 H 0.97002 * 120.00008 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.30943 * 179.72221 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 -0.0006 6 6 4.3062 0.1129 -0.0006 7 7 5.6208 0.1811 -0.0006 8 6 6.2571 1.3449 -0.0001 9 7 7.6413 1.3657 -0.0006 10 6 8.3547 2.6453 0.0005 11 6 9.8630 2.3883 0.0002 12 6 10.5968 3.7045 0.0020 13 1 10.0428 4.6316 0.0028 14 6 11.9754 3.7253 0.0015 15 7 12.6157 4.8740 0.0026 16 14 12.9336 2.1218 -0.0006 17 1 13.1870 1.6985 -1.4012 18 1 14.2285 2.3180 0.6992 19 1 12.1469 1.0741 0.6985 20 6 5.5521 2.5471 0.0062 21 6 4.1835 2.5231 0.0001 22 6 3.3903 3.8044 0.0002 23 9 4.2662 4.8952 0.0008 24 9 2.5844 3.8541 -1.1423 25 9 2.5837 3.8533 1.1424 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.8197 -0.8513 -0.0006 30 1 8.1389 0.5330 -0.0018 31 1 8.0832 3.2119 0.8912 32 1 8.0825 3.2138 -0.8888 33 1 10.1348 1.8199 0.8896 34 1 10.1348 1.8215 -0.8903 35 1 13.5856 4.8886 0.0027 36 1 6.0806 3.4889 0.0111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804610537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:27 Heat of formation + Delta-G solvation = -211.488345 kcal Electronic energy + Delta-G solvation = -26604.935553 eV Core-core repulsion = 22059.896170 eV Total energy + Delta-G solvation = -4545.039383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.20963 -48.75712 -48.61364 -42.04819 -40.92403 -37.85009 -37.44795 -35.17671 -34.55873 -32.87699 -31.03423 -28.60828 -27.78636 -26.98720 -24.77080 -23.89079 -22.54606 -22.28247 -20.09121 -19.59614 -19.53420 -19.01006 -18.76276 -18.47799 -17.44310 -17.37439 -17.02433 -16.31670 -16.26436 -15.95035 -15.58298 -15.57093 -15.29858 -15.13103 -15.03703 -14.89218 -14.80369 -14.72300 -14.62089 -14.15385 -13.93509 -13.39549 -13.33744 -13.19836 -12.99375 -12.38914 -12.11878 -11.86606 -11.80600 -11.77128 -11.65376 -11.48436 -11.17322 -10.85209 -10.77447 -9.04347 -8.29864 -6.36448 -0.72324 -0.19211 1.39613 1.39737 1.39843 1.41338 1.51447 1.61494 1.90002 2.36044 2.47776 2.52269 2.90666 3.06156 3.29886 3.43844 3.49844 3.66835 3.78237 4.15493 4.22774 4.36884 4.38471 4.40402 4.40421 4.57762 4.73298 4.79592 5.00409 5.20641 5.26067 5.37713 5.51770 5.70184 6.19209 6.34636 6.59977 6.71737 6.79936 7.28711 8.86115 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.003076 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.483037 B = 9100.596702 C =10144.667531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.348 6.348 3 C 0.517 3.483 4 O -0.527 6.527 5 C -0.236 4.236 6 C 0.241 3.759 7 N -0.544 5.544 8 C 0.441 3.559 9 N -0.687 5.687 10 C 0.137 3.863 11 C -0.017 4.017 12 C -0.534 4.534 13 H 0.040 0.960 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.950 3.050 17 H -0.268 1.268 18 H -0.290 1.290 19 H -0.240 1.240 20 C -0.208 4.208 21 C -0.038 4.038 22 C 0.513 3.487 23 F -0.177 7.177 24 F -0.169 7.169 25 F -0.169 7.169 26 H 0.138 0.862 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.215 0.785 30 H 0.417 0.583 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.267 0.733 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.409 -13.403 0.020 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.264 6.264 3 C 0.363 3.637 4 O -0.417 6.417 5 C -0.243 4.243 6 C 0.079 3.921 7 N -0.262 5.262 8 C 0.200 3.800 9 N -0.313 5.313 10 C 0.014 3.986 11 C -0.055 4.055 12 C -0.572 4.572 13 H 0.059 0.941 14 C -0.190 4.190 15 N -0.588 5.588 16 Si 0.774 3.226 17 H -0.193 1.193 18 H -0.216 1.216 19 H -0.163 1.163 20 C -0.234 4.234 21 C -0.047 4.047 22 C 0.459 3.541 23 F -0.159 7.159 24 F -0.150 7.150 25 F -0.150 7.150 26 H 0.156 0.844 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.255 0.745 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.824 -13.538 0.023 25.682 hybrid contribution 0.204 0.997 -0.026 1.018 sum -21.619 -12.541 -0.003 24.993 Atomic orbital electron populations 1.23602 0.73930 1.06005 1.02589 1.86488 1.25366 1.30558 1.83967 1.20676 0.88287 0.82184 0.72576 1.90917 1.67164 1.36533 1.47126 1.19431 0.91112 0.94167 1.19575 1.23398 0.86660 0.98271 0.83744 1.67514 1.11223 1.25769 1.21670 1.18599 0.86212 0.88798 0.86350 1.44984 1.01358 1.10941 1.74016 1.21509 0.92225 0.83155 1.01731 1.19648 0.91363 0.96378 0.98079 1.21215 0.91913 0.92913 1.51173 0.94118 1.25969 0.99081 1.00009 0.93968 1.70054 1.08897 1.27832 1.52025 0.85661 0.77880 0.79962 0.79124 1.19314 1.21602 1.16270 1.21062 0.92428 1.00444 1.09431 1.19876 0.94064 0.91991 0.98795 1.17998 0.77727 0.83737 0.74662 1.93198 1.69004 1.57416 1.96268 1.93210 1.74516 1.96627 1.50665 1.93212 1.74482 1.96629 1.50697 0.84379 0.91986 0.91992 0.76889 0.74498 0.91364 0.91359 0.94763 0.94907 0.92417 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.35 -5.97 9.83 -56.61 -0.56 -6.53 16 3 C 0.52 12.08 7.74 70.24 0.54 12.63 16 4 O -0.53 -15.10 11.32 19.80 0.22 -14.88 16 5 C -0.24 -5.48 5.87 -20.00 -0.12 -5.60 16 6 C 0.24 4.65 10.79 85.07 0.92 5.57 16 7 N -0.54 -12.65 10.38 -192.29 -2.00 -14.65 16 8 C 0.44 11.41 7.63 133.24 1.02 12.43 16 9 N -0.69 -18.30 5.71 -345.17 -1.97 -20.27 16 10 C 0.14 4.42 4.81 86.38 0.42 4.83 16 11 C -0.02 -0.67 4.16 29.85 0.12 -0.54 16 12 C -0.53 -27.93 9.66 25.60 0.25 -27.68 16 13 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 14 C 0.01 0.40 5.47 84.65 0.46 0.86 16 15 N -0.95 -56.78 13.96 21.45 0.30 -56.49 16 16 Si 0.95 40.81 27.47 68.60 1.88 42.69 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 20 C -0.21 -5.50 8.65 22.22 0.19 -5.31 16 21 C -0.04 -1.02 5.39 -19.66 -0.11 -1.12 16 22 C 0.51 14.72 2.78 71.24 0.20 14.92 16 23 F -0.18 -5.09 16.05 44.97 0.72 -4.37 16 24 F -0.17 -5.10 15.13 44.97 0.68 -4.42 16 25 F -0.17 -5.10 15.13 44.97 0.68 -4.42 16 26 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.21 2.50 7.61 -2.91 -0.02 2.48 16 30 H 0.42 10.06 8.59 -92.70 -0.80 9.26 16 31 H 0.07 2.22 7.90 -2.39 -0.02 2.20 16 32 H 0.07 2.22 7.92 -2.39 -0.02 2.20 16 33 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 34 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.16 4.17 5.82 -2.91 -0.02 4.15 16 Total: -1.00 -65.54 322.56 5.37 -60.18 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.30 Total: 10.58 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.09 Total: 12.55 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -3.67 Total: -91.40 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.33 Total: -21.40 kcal Atomic # 9 Polarization: -15.29 SS G_CDS: 2.08 Total: -13.20 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.69 kcal Total: -65.54 5.37 -60.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804610537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.309 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds