Wall clock time and date at job start Tue Mar 31 2020 11:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47105 * 239.99769 * 3 2 1 5 5 H 1.48500 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46753 * 120.00094 * 3 2 1 7 7 C 1.38799 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00018 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46852 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46728 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46608 * 180.02562 * 12 11 10 14 14 C 1.34750 * 116.99574 * 179.97438 * 13 12 11 15 15 O 1.21499 * 119.99797 * 359.72916 * 14 13 12 16 16 C 1.47556 * 119.99847 * 180.02562 * 14 13 12 17 17 C 1.39802 * 119.96623 * 359.72449 * 16 14 13 18 18 C 1.36669 * 120.16003 * 179.97438 * 17 16 14 19 19 C 1.39491 * 119.95014 * 359.97438 * 18 17 16 20 20 C 1.39853 * 120.19273 * 359.97438 * 19 18 17 21 21 C 1.37476 * 119.91240 * 359.76777 * 20 19 18 22 22 C 1.50582 * 119.38515 * 180.02562 * 20 19 18 23 23 C 1.52752 * 109.81360 * 325.47924 * 22 20 19 24 24 C 1.50318 * 110.72344 * 50.32463 * 23 22 20 25 25 C 1.32644 * 121.08658 * 324.21211 * 24 23 22 26 26 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46576 * 60.00713 * 10 9 7 28 28 H 1.08989 * 109.47694 * 300.00265 * 10 9 7 29 29 H 1.08996 * 109.47192 * 60.00601 * 11 10 9 30 30 H 1.09001 * 109.47435 * 300.00220 * 11 10 9 31 31 H 1.08996 * 109.47086 * 60.00177 * 12 11 10 32 32 H 1.09001 * 109.47050 * 300.00097 * 12 11 10 33 33 H 1.08006 * 119.92072 * 359.97377 * 17 16 14 34 34 H 1.08000 * 120.02316 * 180.02562 * 18 17 16 35 35 H 1.07994 * 120.14144 * 180.23129 * 21 20 19 36 36 H 1.09000 * 109.41141 * 85.57945 * 22 20 19 37 37 H 1.08991 * 109.41658 * 205.37218 * 22 20 19 38 38 H 1.09002 * 109.22251 * 170.64584 * 23 22 20 39 39 H 1.08996 * 109.22446 * 290.04309 * 23 22 20 40 40 H 1.07996 * 119.45604 * 144.21227 * 24 23 22 41 41 H 1.08000 * 120.25319 * 180.47625 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1513 -6.3078 -0.0005 13 8 2.6420 -7.6676 -0.0018 14 6 3.5519 -8.6615 -0.0019 15 8 4.7382 -8.3991 -0.0060 16 6 3.1074 -10.0686 -0.0037 17 6 1.7422 -10.3696 0.0006 18 6 1.3261 -11.6714 -0.0016 19 6 2.2654 -12.7027 -0.0086 20 6 3.6327 -12.4088 -0.0140 21 6 4.0524 -11.0997 -0.0172 22 6 4.6308 -13.5362 -0.0222 23 6 4.0912 -14.7113 0.7910 24 6 2.6934 -15.0586 0.3608 25 6 1.8366 -14.1161 -0.0093 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7314 0.8896 28 1 3.1245 -3.7314 -0.8904 29 1 1.3709 -5.4841 -0.8914 30 1 1.3703 -5.4847 0.8885 31 1 3.7592 -6.1479 0.8899 32 1 3.7606 -6.1475 -0.8901 33 1 1.0145 -9.5715 0.0056 34 1 0.2709 -11.9015 0.0013 35 1 5.1073 -10.8685 -0.0252 36 1 4.8068 -13.8568 -1.0490 37 1 5.5684 -13.1933 0.4150 38 1 4.7376 -15.5766 0.6437 39 1 4.0850 -14.4438 1.8476 40 1 2.3816 -16.0926 0.3530 41 1 0.8331 -14.3801 -0.3086 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805543457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:50 Heat of formation + Delta-G solvation = -72.002158 kcal Electronic energy + Delta-G solvation = -22044.475582 eV Core-core repulsion = 18593.634728 eV Total energy + Delta-G solvation = -3450.840854 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83253 -39.82563 -36.84285 -36.25776 -33.49671 -32.92222 -32.44176 -30.89501 -29.61653 -26.80661 -25.53862 -24.47395 -23.93174 -22.33992 -21.37509 -21.10591 -18.82590 -17.88520 -17.40431 -17.03746 -16.58284 -16.35857 -15.67801 -15.24710 -14.82577 -14.80204 -14.63583 -14.33376 -13.90572 -13.68720 -13.37570 -13.16028 -12.93850 -12.75926 -12.62829 -12.36790 -12.11340 -12.10133 -11.35231 -11.20224 -11.13247 -11.10261 -10.97700 -10.92625 -10.69949 -10.54850 -10.45197 -10.27543 -9.64155 -9.24909 -9.06748 -8.53919 -8.36098 -6.56354 -6.24487 -3.95637 0.10322 1.02209 1.69432 2.53209 2.56106 3.22018 3.23243 3.27736 3.51567 3.54205 4.16465 4.16749 4.20359 4.40562 4.52338 4.59279 4.66673 4.86943 4.88054 4.96473 5.10786 5.13451 5.14098 5.19086 5.26940 5.34117 5.38755 5.48778 5.52442 5.54355 5.65152 5.76076 5.78014 5.87884 5.95263 6.01701 6.13986 6.18530 6.35238 6.42358 6.45264 6.49905 6.67276 7.59004 7.68420 8.34823 9.21743 10.83594 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.044735 B = 0.001764 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.761364 B =15871.849908 C =16431.149268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.350 6.350 14 C 0.507 3.493 15 O -0.509 6.509 16 C -0.122 4.122 17 C -0.062 4.062 18 C -0.119 4.119 19 C -0.023 4.023 20 C -0.094 4.094 21 C -0.051 4.051 22 C -0.078 4.078 23 C -0.096 4.096 24 C -0.132 4.132 25 C -0.130 4.130 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -31.429 0.379 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.267 6.267 14 C 0.352 3.648 15 O -0.399 6.399 16 C -0.123 4.123 17 C -0.080 4.080 18 C -0.137 4.137 19 C -0.023 4.023 20 C -0.094 4.094 21 C -0.069 4.069 22 C -0.115 4.115 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.148 4.148 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.426 -31.361 0.379 31.674 hybrid contribution 1.889 1.462 -0.024 2.389 sum 6.315 -29.899 0.355 30.560 Atomic orbital electron populations 1.70010 1.05921 1.27516 1.47042 1.25015 0.95097 0.99105 0.94507 0.86204 0.79227 0.81110 0.78884 1.19905 1.20785 1.19913 1.22661 0.94576 0.90708 1.58813 0.90883 1.84640 1.08778 0.99196 1.96889 1.23183 1.03449 0.96331 1.03365 1.21288 0.96430 0.91551 1.04332 1.23301 0.97829 0.76317 1.02699 1.86522 1.39665 1.16907 1.83584 1.21106 0.84236 0.86546 0.72960 1.90834 1.18030 1.85049 1.45952 1.19207 0.94553 0.89682 1.08884 1.21237 0.94738 0.97444 0.94570 1.20929 0.99747 0.91765 1.01277 1.19177 0.92543 0.93683 0.96872 1.19855 0.93804 0.94101 1.01635 1.21011 0.99900 0.90628 0.95376 1.20412 0.96935 0.92717 1.01446 1.20480 0.94209 0.98180 1.00399 1.23286 0.95096 0.98976 0.97644 1.21676 0.99785 0.90938 1.02435 0.92196 0.91711 0.91714 0.90309 0.90318 0.91051 0.91053 0.83951 0.84802 0.84331 0.90161 0.89901 0.90196 0.90274 0.86319 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.89 9.50 30.94 0.29 -14.59 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.21 21.44 -107.50 -2.30 -5.51 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.60 5.60 -26.72 -0.15 -1.75 16 12 C 0.07 1.09 5.48 37.16 0.20 1.29 16 13 O -0.35 -5.04 9.45 -40.63 -0.38 -5.42 16 14 C 0.51 7.19 7.89 34.53 0.27 7.46 16 15 O -0.51 -8.35 16.12 -19.26 -0.31 -8.66 16 16 C -0.12 -1.42 5.88 -104.90 -0.62 -2.04 16 17 C -0.06 -0.61 9.55 -39.56 -0.38 -0.99 16 18 C -0.12 -0.99 9.75 -39.68 -0.39 -1.38 16 19 C -0.02 -0.19 5.78 -104.96 -0.61 -0.80 16 20 C -0.09 -0.82 5.67 -104.35 -0.59 -1.41 16 21 C -0.05 -0.52 9.25 -39.25 -0.36 -0.89 16 22 C -0.08 -0.48 5.95 -28.07 -0.17 -0.65 16 23 C -0.10 -0.48 6.05 -28.20 -0.17 -0.65 16 24 C -0.13 -0.71 10.03 -36.39 -0.36 -1.07 16 25 C -0.13 -0.84 9.90 -37.62 -0.37 -1.21 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.06 1.28 8.14 -51.91 -0.42 0.86 16 28 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 33 H 0.14 1.31 7.59 -52.48 -0.40 0.91 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.14 1.37 7.64 -52.49 -0.40 0.96 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.12 0.42 8.06 -52.49 -0.42 -0.01 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -32.78 365.40 -10.90 -43.68 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.84 Total: -2.13 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -3.28 Total: -18.81 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.73 Total: -25.17 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.69 Total: -14.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.30 Total: -5.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.78 -10.90 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805543457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.324 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds