Wall clock time and date at job start Tue Mar 31 2020 11:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47105 * 239.99769 * 3 2 1 5 5 H 1.48500 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46753 * 120.00094 * 3 2 1 7 7 C 1.38799 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00018 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46852 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46728 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46608 * 180.02562 * 12 11 10 14 14 C 1.34750 * 116.99574 * 179.97438 * 13 12 11 15 15 O 1.21499 * 119.99797 * 359.72916 * 14 13 12 16 16 C 1.47556 * 119.99847 * 180.02562 * 14 13 12 17 17 C 1.39802 * 119.96623 * 359.72449 * 16 14 13 18 18 C 1.36669 * 120.16003 * 179.97438 * 17 16 14 19 19 C 1.39491 * 119.95014 * 359.97438 * 18 17 16 20 20 C 1.39853 * 120.19273 * 359.97438 * 19 18 17 21 21 C 1.37476 * 119.91240 * 359.76777 * 20 19 18 22 22 C 1.50582 * 119.38515 * 180.02562 * 20 19 18 23 23 C 1.52752 * 109.81360 * 325.47924 * 22 20 19 24 24 C 1.50318 * 110.72344 * 50.32463 * 23 22 20 25 25 C 1.32644 * 121.08658 * 324.21211 * 24 23 22 26 26 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46576 * 60.00713 * 10 9 7 28 28 H 1.08989 * 109.47694 * 300.00265 * 10 9 7 29 29 H 1.08996 * 109.47192 * 60.00601 * 11 10 9 30 30 H 1.09001 * 109.47435 * 300.00220 * 11 10 9 31 31 H 1.08996 * 109.47086 * 60.00177 * 12 11 10 32 32 H 1.09001 * 109.47050 * 300.00097 * 12 11 10 33 33 H 1.08006 * 119.92072 * 359.97377 * 17 16 14 34 34 H 1.08000 * 120.02316 * 180.02562 * 18 17 16 35 35 H 1.07994 * 120.14144 * 180.23129 * 21 20 19 36 36 H 1.09000 * 109.41141 * 85.57945 * 22 20 19 37 37 H 1.08991 * 109.41658 * 205.37218 * 22 20 19 38 38 H 1.09002 * 109.22251 * 170.64584 * 23 22 20 39 39 H 1.08996 * 109.22446 * 290.04309 * 23 22 20 40 40 H 1.07996 * 119.45604 * 144.21227 * 24 23 22 41 41 H 1.08000 * 120.25319 * 180.47625 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1513 -6.3078 -0.0005 13 8 2.6420 -7.6676 -0.0018 14 6 3.5519 -8.6615 -0.0019 15 8 4.7382 -8.3991 -0.0060 16 6 3.1074 -10.0686 -0.0037 17 6 1.7422 -10.3696 0.0006 18 6 1.3261 -11.6714 -0.0016 19 6 2.2654 -12.7027 -0.0086 20 6 3.6327 -12.4088 -0.0140 21 6 4.0524 -11.0997 -0.0172 22 6 4.6308 -13.5362 -0.0222 23 6 4.0912 -14.7113 0.7910 24 6 2.6934 -15.0586 0.3608 25 6 1.8366 -14.1161 -0.0093 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7314 0.8896 28 1 3.1245 -3.7314 -0.8904 29 1 1.3709 -5.4841 -0.8914 30 1 1.3703 -5.4847 0.8885 31 1 3.7592 -6.1479 0.8899 32 1 3.7606 -6.1475 -0.8901 33 1 1.0145 -9.5715 0.0056 34 1 0.2709 -11.9015 0.0013 35 1 5.1073 -10.8685 -0.0252 36 1 4.8068 -13.8568 -1.0490 37 1 5.5684 -13.1933 0.4150 38 1 4.7376 -15.5766 0.6437 39 1 4.0850 -14.4438 1.8476 40 1 2.3816 -16.0926 0.3530 41 1 0.8331 -14.3801 -0.3086 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805543457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:49 Heat of formation + Delta-G solvation = -87.355726 kcal Electronic energy + Delta-G solvation = -22045.141363 eV Core-core repulsion = 18593.634728 eV Total energy + Delta-G solvation = -3451.506634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77870 -40.64120 -37.92624 -36.94885 -34.92366 -34.58845 -33.51689 -31.59327 -30.18798 -28.27367 -27.52440 -25.35970 -24.52883 -22.97755 -22.77340 -22.05152 -19.67376 -19.38234 -18.65189 -18.12192 -17.77994 -16.95444 -16.90256 -16.39930 -16.18535 -16.01752 -15.71300 -15.36257 -14.99452 -14.50507 -14.35957 -14.19722 -14.15426 -13.82278 -13.57895 -13.40525 -13.16845 -12.94149 -12.89895 -12.70756 -12.64582 -12.42720 -12.41554 -11.91869 -11.70829 -11.56574 -11.55733 -11.38771 -11.14677 -11.04769 -10.37858 -9.93658 -9.12390 -8.68994 -8.38600 -6.15418 -0.64077 0.32838 1.01008 1.24608 1.39834 1.40798 1.49730 1.73884 1.81668 2.26494 2.79043 2.95844 3.26768 3.49805 3.60491 3.72723 3.81971 3.83940 3.94496 4.05448 4.10418 4.13359 4.23515 4.30118 4.35515 4.44489 4.47849 4.64460 4.66514 4.74395 4.87076 4.99024 4.99200 5.02677 5.07002 5.13674 5.21096 5.26654 5.35318 5.35738 5.38993 5.68558 5.78052 5.91946 6.16842 6.57411 7.03654 8.70481 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.044735 B = 0.001764 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.761364 B =15871.849908 C =16431.149268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.182 6.182 10 C -0.092 4.092 11 C -0.085 4.085 12 C 0.080 3.920 13 O -0.351 6.351 14 C 0.507 3.493 15 O -0.539 6.539 16 C -0.149 4.149 17 C -0.065 4.065 18 C -0.122 4.122 19 C -0.020 4.020 20 C -0.102 4.102 21 C -0.058 4.058 22 C -0.080 4.080 23 C -0.100 4.100 24 C -0.117 4.117 25 C -0.153 4.153 26 H 0.272 0.728 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.143 0.857 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -33.462 0.449 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.691 4.691 8 H 0.092 0.908 9 S 0.046 5.954 10 C -0.241 4.241 11 C -0.123 4.123 12 C 0.005 3.995 13 O -0.267 6.267 14 C 0.354 3.646 15 O -0.431 6.431 16 C -0.150 4.150 17 C -0.083 4.083 18 C -0.140 4.140 19 C -0.020 4.020 20 C -0.102 4.102 21 C -0.077 4.077 22 C -0.117 4.117 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.171 4.171 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.161 0.839 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.984 -33.412 0.450 33.785 hybrid contribution 1.719 1.873 -0.035 2.543 sum 6.703 -31.539 0.415 32.246 Atomic orbital electron populations 1.70140 1.07630 1.28696 1.47739 1.26057 0.96049 1.03070 0.93666 0.85066 0.77943 0.76092 0.79324 1.18977 1.19870 1.18988 1.23035 0.94873 0.91988 1.59208 0.90788 1.84608 1.12965 1.00740 1.97070 1.23070 1.00866 0.96506 1.03692 1.21102 0.96901 0.89747 1.04572 1.23082 0.96824 0.76545 1.03046 1.86509 1.39802 1.16683 1.83703 1.21600 0.83794 0.87260 0.71910 1.90807 1.19061 1.85462 1.47730 1.19201 0.95722 0.88280 1.11845 1.21331 0.93994 0.98447 0.94559 1.21217 1.01135 0.91021 1.00598 1.19554 0.92414 0.95055 0.95025 1.20170 0.94825 0.94094 1.01097 1.21084 0.99584 0.91232 0.95763 1.20499 0.96628 0.92333 1.02206 1.20574 0.94618 0.98431 0.99994 1.23625 0.94707 0.99941 0.95220 1.21836 1.01106 0.89818 1.04298 0.91876 0.91317 0.91326 0.90111 0.90112 0.90752 0.90774 0.83694 0.82355 0.84719 0.89514 0.89253 0.87958 0.90414 0.83946 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.60 13.22 21.65 0.29 -54.31 16 2 C 0.02 0.96 5.49 84.86 0.47 1.42 16 3 Si 0.99 44.02 29.55 68.60 2.03 46.05 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -31.45 9.50 67.95 0.65 -30.80 16 8 H 0.07 4.12 7.80 -2.91 -0.02 4.09 16 9 S -0.18 -9.68 21.44 -56.49 -1.21 -10.89 16 10 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 11 C -0.08 -2.76 5.60 30.60 0.17 -2.59 16 12 C 0.08 2.36 5.48 71.98 0.39 2.76 16 13 O -0.35 -10.13 9.45 -56.61 -0.53 -10.66 16 14 C 0.51 14.72 7.89 70.28 0.55 15.28 16 15 O -0.54 -18.15 16.12 19.84 0.32 -17.83 16 16 C -0.15 -3.54 5.88 -20.05 -0.12 -3.66 16 17 C -0.07 -1.27 9.55 22.28 0.21 -1.06 16 18 C -0.12 -1.88 9.75 22.20 0.22 -1.66 16 19 C -0.02 -0.31 5.78 -20.08 -0.12 -0.43 16 20 C -0.10 -1.67 5.67 -19.69 -0.11 -1.79 16 21 C -0.06 -1.22 9.25 22.49 0.21 -1.01 16 22 C -0.08 -0.84 5.95 29.73 0.18 -0.67 16 23 C -0.10 -0.72 6.05 29.65 0.18 -0.54 16 24 C -0.12 -0.87 10.03 24.40 0.24 -0.63 16 25 C -0.15 -1.56 9.90 23.61 0.23 -1.33 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 33 H 0.15 2.64 7.59 -2.91 -0.02 2.62 16 34 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.13 2.78 7.64 -2.91 -0.02 2.76 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.82 8.07 -2.39 -0.02 0.80 16 38 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.14 0.41 8.06 -2.91 -0.02 0.38 16 41 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -71.33 365.40 5.67 -65.66 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.02 Total: 11.99 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.77 Total: -30.00 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.29 Total: -54.31 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.21 Total: -28.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -9.68 SS G_CDS: -1.21 Total: -10.89 kcal Total: -71.33 5.67 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805543457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.699 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds