Wall clock time and date at job start Tue Mar 31 2020 11:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00178 * 2 1 4 4 H 1.48495 * 109.47462 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46901 * 300.00244 * 3 2 1 6 6 H 1.48497 * 109.47066 * 60.00006 * 3 2 1 7 7 C 1.37875 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47523 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47392 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47095 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46866 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00490 * 359.97438 * 13 12 11 15 15 O 1.34235 * 119.99985 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00292 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47039 * 180.02562 * 16 15 13 18 18 C 1.31821 * 122.55678 * 0.02562 * 17 16 15 19 19 S 1.75303 * 111.40307 * 179.97438 * 18 17 16 20 20 C 1.75899 * 92.19266 * 0.02562 * 19 18 17 21 21 C 1.39853 * 130.55931 * 180.02562 * 20 19 18 22 22 C 1.37468 * 120.17563 * 179.97438 * 21 20 19 23 23 C 1.38841 * 120.19160 * 0.02562 * 22 21 20 24 24 C 1.36095 * 120.59178 * 359.97438 * 23 22 21 25 25 C 1.39741 * 109.68374 * 0.02562 * 20 19 18 26 26 H 0.96995 * 120.00194 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47067 * 59.99807 * 9 7 2 28 28 H 1.09004 * 109.46927 * 299.99754 * 9 7 2 29 29 H 1.08993 * 109.47154 * 59.99619 * 10 9 7 30 30 H 1.09004 * 109.46927 * 299.99887 * 10 9 7 31 31 H 1.08993 * 109.47390 * 59.99631 * 11 10 9 32 32 H 1.09004 * 109.46884 * 299.99781 * 11 10 9 33 33 H 1.09002 * 109.47143 * 59.99858 * 12 11 10 34 34 H 1.09003 * 109.47451 * 299.99285 * 12 11 10 35 35 H 1.09003 * 109.46680 * 59.99679 * 16 15 13 36 36 H 1.09007 * 109.46846 * 300.00311 * 16 15 13 37 37 H 1.07997 * 124.29755 * 359.97438 * 18 17 16 38 38 H 1.08003 * 119.91431 * 359.96949 * 21 20 19 39 39 H 1.08002 * 119.90514 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.70951 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.77544 * 179.69954 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1500 -0.0008 13 6 1.7210 -7.4551 -0.0008 14 8 0.5127 -7.4552 0.0002 15 8 2.3921 -8.6176 -0.0008 16 6 1.6014 -9.8354 -0.0002 17 6 2.5194 -11.0304 0.0004 18 6 3.8326 -10.9161 0.0008 19 16 4.6115 -12.4866 0.0021 20 6 3.0667 -13.3278 0.0013 21 6 2.7762 -14.6959 0.0021 22 6 1.4702 -15.1249 0.0017 23 6 0.4323 -14.2027 -0.0001 24 6 0.6927 -12.8669 -0.0009 25 6 2.0241 -12.3974 -0.0006 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6044 0.8904 30 1 2.8719 -3.6044 -0.8895 31 1 0.8539 -5.0446 -0.8902 32 1 0.8534 -5.0451 0.8897 33 1 3.1013 -6.0927 0.8892 34 1 3.1011 -6.0919 -0.8908 35 1 0.9722 -9.8604 -0.8899 36 1 0.9728 -9.8600 0.8901 37 1 4.3615 -9.9745 0.0004 38 1 3.5800 -15.4172 0.0030 39 1 1.2508 -16.1824 0.0019 40 1 -0.5909 -14.5484 -0.0008 41 1 -0.1248 -12.1612 -0.0073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:45 Heat of formation + Delta-G solvation = -68.066163 kcal Electronic energy + Delta-G solvation = -22048.631834 eV Core-core repulsion = 18597.961658 eV Total energy + Delta-G solvation = -3450.670176 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66184 -39.91422 -37.18494 -35.55974 -34.99599 -32.70393 -31.55450 -30.33848 -29.76896 -27.88982 -25.78283 -23.67364 -23.04552 -22.61716 -20.64185 -20.06155 -20.01154 -18.54180 -17.48121 -16.84505 -16.60870 -16.17885 -15.86633 -15.73111 -15.24339 -15.08704 -14.45110 -14.24456 -14.11108 -13.93664 -13.43103 -12.93122 -12.74943 -12.60321 -12.35378 -12.12407 -11.79074 -11.67508 -11.67080 -11.55357 -11.03464 -11.03116 -10.96626 -10.61959 -10.57347 -10.48538 -10.40994 -9.97972 -9.66907 -9.30618 -9.02137 -8.96695 -8.32975 -8.09076 -5.97541 -4.00091 0.30993 0.79106 1.12837 1.58151 1.79376 2.22892 2.46985 3.25855 3.32202 3.39569 3.43507 4.15583 4.25560 4.47403 4.48057 4.62292 4.78276 4.84847 4.93315 4.98659 5.00089 5.15327 5.20689 5.24357 5.34762 5.38151 5.51312 5.61423 5.72382 5.84846 5.96815 6.03197 6.05662 6.16973 6.33137 6.39021 6.45080 6.74613 6.92698 7.14577 7.71174 7.74248 7.85607 8.03222 8.44999 9.07692 9.63895 11.13806 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.001743 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.292613 B =16061.386326 C =16791.325277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.462 3.538 14 O -0.503 6.503 15 O -0.360 6.360 16 C 0.128 3.872 17 C -0.099 4.099 18 C -0.164 4.164 19 S 0.088 5.912 20 C -0.138 4.138 21 C -0.083 4.083 22 C -0.104 4.104 23 C -0.116 4.116 24 C -0.080 4.080 25 C -0.064 4.064 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.178 0.822 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -33.010 -0.005 33.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.306 3.694 14 O -0.389 6.389 15 O -0.278 6.278 16 C 0.051 3.949 17 C -0.111 4.111 18 C -0.298 4.298 19 S 0.354 5.646 20 C -0.253 4.253 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.100 4.100 25 C -0.072 4.072 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.196 0.804 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.406 -33.317 -0.003 34.131 hybrid contribution -1.130 1.342 -0.003 1.754 sum 6.276 -31.976 -0.007 32.586 Atomic orbital electron populations 1.69978 1.06055 1.26443 1.50957 1.25042 0.94849 0.99278 0.95420 0.86546 0.80087 0.83865 0.77552 1.19761 1.21045 1.21049 1.21311 0.93062 0.91130 1.50383 0.92627 1.19108 0.94046 0.91254 0.97387 1.21650 0.99154 0.93528 1.00430 1.21584 0.97088 0.92673 1.03287 1.21625 0.99968 0.87666 1.05577 1.24237 0.87648 0.85605 0.71953 1.90683 1.15651 1.87741 1.44828 1.86450 1.41885 1.14804 1.84661 1.21273 0.91220 0.78961 1.03400 1.19383 0.93895 0.92307 1.05518 1.24960 0.97075 1.01777 1.05989 1.84202 1.05503 0.96397 1.78510 1.22683 0.96906 0.97588 1.08172 1.20491 0.97310 0.92119 1.00604 1.21087 0.91985 0.99982 0.99399 1.20739 0.99715 0.92785 1.00375 1.20774 0.94296 0.96220 0.98722 1.18909 0.93960 0.90483 1.03885 0.93079 0.96529 0.96518 0.93180 0.93187 0.91503 0.91497 0.87786 0.87782 0.89615 0.89616 0.80436 0.85406 0.85106 0.85224 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.11 -1.84 4.50 -26.74 -0.12 -1.96 16 12 C -0.11 -1.42 5.81 -27.88 -0.16 -1.58 16 13 C 0.46 6.35 7.96 36.01 0.29 6.63 16 14 O -0.50 -8.42 15.73 -18.75 -0.29 -8.71 16 15 O -0.36 -4.26 9.03 -39.27 -0.35 -4.62 16 16 C 0.13 1.35 5.77 36.00 0.21 1.55 16 17 C -0.10 -1.00 5.97 -103.67 -0.62 -1.62 16 18 C -0.16 -1.55 10.28 28.84 0.30 -1.26 16 19 S 0.09 0.75 23.23 -107.50 -2.50 -1.75 16 20 C -0.14 -1.27 6.48 -38.42 -0.25 -1.52 16 21 C -0.08 -0.61 10.07 -39.26 -0.40 -1.00 16 22 C -0.10 -0.64 10.03 -39.64 -0.40 -1.04 16 23 C -0.12 -0.76 9.95 -40.13 -0.40 -1.16 16 24 C -0.08 -0.65 9.82 -39.24 -0.39 -1.04 16 25 C -0.06 -0.62 6.01 -105.37 -0.63 -1.26 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 0.88 8.13 -51.93 -0.42 0.46 16 36 H 0.09 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.18 1.52 7.39 -52.49 -0.39 1.13 16 38 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -32.97 366.48 -11.01 -43.98 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.84 Total: -3.76 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.26 Total: -20.87 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.65 Total: -13.33 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.97 -11.01 -43.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.089 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds