Wall clock time and date at job start Tue Mar 31 2020 11:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00178 * 2 1 4 4 H 1.48495 * 109.47462 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46901 * 300.00244 * 3 2 1 6 6 H 1.48497 * 109.47066 * 60.00006 * 3 2 1 7 7 C 1.37875 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47523 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47392 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47095 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46866 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00490 * 359.97438 * 13 12 11 15 15 O 1.34235 * 119.99985 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00292 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47039 * 180.02562 * 16 15 13 18 18 C 1.31821 * 122.55678 * 0.02562 * 17 16 15 19 19 S 1.75303 * 111.40307 * 179.97438 * 18 17 16 20 20 C 1.75899 * 92.19266 * 0.02562 * 19 18 17 21 21 C 1.39853 * 130.55931 * 180.02562 * 20 19 18 22 22 C 1.37468 * 120.17563 * 179.97438 * 21 20 19 23 23 C 1.38841 * 120.19160 * 0.02562 * 22 21 20 24 24 C 1.36095 * 120.59178 * 359.97438 * 23 22 21 25 25 C 1.39741 * 109.68374 * 0.02562 * 20 19 18 26 26 H 0.96995 * 120.00194 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47067 * 59.99807 * 9 7 2 28 28 H 1.09004 * 109.46927 * 299.99754 * 9 7 2 29 29 H 1.08993 * 109.47154 * 59.99619 * 10 9 7 30 30 H 1.09004 * 109.46927 * 299.99887 * 10 9 7 31 31 H 1.08993 * 109.47390 * 59.99631 * 11 10 9 32 32 H 1.09004 * 109.46884 * 299.99781 * 11 10 9 33 33 H 1.09002 * 109.47143 * 59.99858 * 12 11 10 34 34 H 1.09003 * 109.47451 * 299.99285 * 12 11 10 35 35 H 1.09003 * 109.46680 * 59.99679 * 16 15 13 36 36 H 1.09007 * 109.46846 * 300.00311 * 16 15 13 37 37 H 1.07997 * 124.29755 * 359.97438 * 18 17 16 38 38 H 1.08003 * 119.91431 * 359.96949 * 21 20 19 39 39 H 1.08002 * 119.90514 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.70951 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.77544 * 179.69954 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1500 -0.0008 13 6 1.7210 -7.4551 -0.0008 14 8 0.5127 -7.4552 0.0002 15 8 2.3921 -8.6176 -0.0008 16 6 1.6014 -9.8354 -0.0002 17 6 2.5194 -11.0304 0.0004 18 6 3.8326 -10.9161 0.0008 19 16 4.6115 -12.4866 0.0021 20 6 3.0667 -13.3278 0.0013 21 6 2.7762 -14.6959 0.0021 22 6 1.4702 -15.1249 0.0017 23 6 0.4323 -14.2027 -0.0001 24 6 0.6927 -12.8669 -0.0009 25 6 2.0241 -12.3974 -0.0006 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6044 0.8904 30 1 2.8719 -3.6044 -0.8895 31 1 0.8539 -5.0446 -0.8902 32 1 0.8534 -5.0451 0.8897 33 1 3.1013 -6.0927 0.8892 34 1 3.1011 -6.0919 -0.8908 35 1 0.9722 -9.8604 -0.8899 36 1 0.9728 -9.8600 0.8901 37 1 4.3615 -9.9745 0.0004 38 1 3.5800 -15.4172 0.0030 39 1 1.2508 -16.1824 0.0019 40 1 -0.5909 -14.5484 -0.0008 41 1 -0.1248 -12.1612 -0.0073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:45 Heat of formation + Delta-G solvation = -83.626349 kcal Electronic energy + Delta-G solvation = -22049.306574 eV Core-core repulsion = 18597.961658 eV Total energy + Delta-G solvation = -3451.344916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68350 -40.55818 -38.16540 -36.67732 -36.25590 -34.66192 -32.13891 -31.74709 -30.64504 -28.83274 -27.44664 -24.76062 -23.92511 -23.56709 -22.06054 -21.47228 -20.72252 -19.21977 -18.54166 -18.33844 -17.87833 -17.49818 -16.54663 -16.45815 -16.31328 -16.30700 -15.88116 -15.24465 -14.82215 -14.68547 -14.55021 -14.42482 -13.77938 -13.75596 -13.56687 -13.38147 -13.27074 -12.86287 -12.67143 -12.41293 -12.33468 -12.20541 -12.19670 -12.16810 -11.83580 -11.66327 -11.64050 -11.38328 -11.28983 -11.04509 -10.59516 -10.54959 -9.57004 -8.71439 -8.18581 -6.30146 -0.30834 0.23099 0.49838 0.91564 1.12473 1.15454 1.41175 1.41627 1.49060 1.55253 2.42284 2.69988 3.14586 3.45661 3.57568 3.80682 3.95315 3.98722 4.07989 4.08529 4.15034 4.16061 4.36793 4.39466 4.54521 4.56629 4.64375 4.77878 4.78858 4.85469 4.94223 5.03684 5.15110 5.24282 5.27344 5.32899 5.39030 5.42159 5.51533 5.57466 5.78577 5.88977 5.89056 6.26037 6.67693 6.88669 7.39508 8.93706 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.001743 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.292613 B =16061.386326 C =16791.325277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.101 4.101 12 C -0.102 4.102 13 C 0.468 3.532 14 O -0.540 6.540 15 O -0.352 6.352 16 C 0.129 3.871 17 C -0.110 4.110 18 C -0.174 4.174 19 S 0.101 5.899 20 C -0.158 4.158 21 C -0.093 4.093 22 C -0.099 4.099 23 C -0.116 4.116 24 C -0.097 4.097 25 C -0.087 4.087 26 H 0.262 0.738 27 H -0.013 1.013 28 H -0.013 1.013 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.184 0.816 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 -34.336 -0.006 35.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.139 4.139 13 C 0.313 3.687 14 O -0.429 6.429 15 O -0.269 6.269 16 C 0.053 3.947 17 C -0.122 4.122 18 C -0.308 4.308 19 S 0.367 5.633 20 C -0.273 4.273 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.117 4.117 25 C -0.095 4.095 26 H 0.071 0.929 27 H 0.005 0.995 28 H 0.005 0.995 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.201 0.799 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.264 -34.670 -0.004 35.886 hybrid contribution -1.759 1.638 -0.003 2.403 sum 7.505 -33.032 -0.007 33.874 Atomic orbital electron populations 1.70126 1.07985 1.27646 1.51980 1.26063 0.95779 1.03654 0.94864 0.85352 0.79206 0.78559 0.77634 1.18169 1.20536 1.20547 1.21794 0.93788 0.92257 1.50051 0.91581 1.19072 0.94717 0.93649 0.94556 1.21440 0.97893 0.92386 1.01672 1.21359 0.97458 0.93194 1.01853 1.21510 0.98857 0.85318 1.08170 1.24337 0.87084 0.86332 0.70921 1.90680 1.17243 1.88247 1.46721 1.86428 1.41622 1.14737 1.84094 1.21335 0.91378 0.78603 1.03433 1.19420 0.94070 0.92336 1.06401 1.25115 0.97135 1.02659 1.05877 1.84049 1.05277 0.95656 1.78365 1.22954 0.96916 0.98489 1.08908 1.20841 0.98575 0.91709 1.00355 1.21500 0.91344 1.01504 0.97661 1.21109 1.01228 0.92220 0.98992 1.21000 0.93979 0.97318 0.99393 1.19084 0.94908 0.90370 1.05121 0.92887 0.99461 0.99452 0.91822 0.91828 0.93067 0.93063 0.85129 0.85123 0.89646 0.89654 0.79868 0.83564 0.82097 0.82800 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.29 21.45 0.28 -58.08 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.78 5.15 30.59 0.16 -3.62 16 11 C -0.10 -3.40 4.50 30.59 0.14 -3.26 16 12 C -0.10 -2.40 5.81 29.85 0.17 -2.23 16 13 C 0.47 12.49 7.96 71.24 0.57 13.06 16 14 O -0.54 -18.28 15.73 21.97 0.35 -17.93 16 15 O -0.35 -8.02 9.03 -51.47 -0.46 -8.48 16 16 C 0.13 2.71 5.77 71.23 0.41 3.13 16 17 C -0.11 -2.21 5.97 -18.80 -0.11 -2.32 16 18 C -0.17 -3.21 10.28 67.04 0.69 -2.52 16 19 S 0.10 1.65 23.23 -56.49 -1.31 0.33 16 20 C -0.16 -2.77 6.48 23.02 0.15 -2.62 16 21 C -0.09 -1.20 10.07 22.48 0.23 -0.97 16 22 C -0.10 -0.99 10.03 22.23 0.22 -0.77 16 23 C -0.12 -1.31 9.95 21.92 0.22 -1.09 16 24 C -0.10 -1.51 9.82 22.49 0.22 -1.29 16 25 C -0.09 -1.66 6.01 -20.35 -0.12 -1.78 16 26 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 27 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 28 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 33 H 0.13 2.47 8.14 -2.39 -0.02 2.46 16 34 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 36 H 0.09 1.79 8.13 -2.38 -0.02 1.77 16 37 H 0.18 2.99 7.39 -2.91 -0.02 2.97 16 38 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -72.69 366.48 5.68 -67.01 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.02 Total: 6.45 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.78 Total: -35.88 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.28 Total: -58.08 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.12 Total: -26.42 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.31 Total: 0.33 kcal Total: -72.69 5.68 -67.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.616 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds