Wall clock time and date at job start Tue Mar 31 2020 12:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37432 * 119.90921 * 2 1 4 4 C 1.38937 * 120.19413 * 180.23761 * 3 2 1 5 5 C 1.35953 * 120.69505 * 0.05586 * 4 3 2 6 6 C 1.41548 * 120.49131 * 359.96281 * 5 4 3 7 7 C 1.40386 * 128.84543 * 180.02562 * 6 5 4 8 8 C 1.33766 * 115.56390 * 179.97438 * 7 6 5 9 9 C 1.46840 * 124.65768 * 179.97438 * 8 7 6 10 10 O 1.21572 * 120.00239 * 0.02562 * 9 8 7 11 11 O 1.34849 * 119.99641 * 180.02562 * 9 8 7 12 12 C 1.45199 * 116.99794 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47373 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47217 * 300.00161 * 13 12 11 15 15 C 1.53007 * 109.47027 * 59.99875 * 13 12 11 16 16 C 1.50701 * 109.47350 * 179.97438 * 13 12 11 17 17 H 1.07998 * 120.00003 * 359.97438 * 16 13 12 18 18 C 1.37882 * 119.99914 * 180.02562 * 16 13 12 19 19 N 1.31509 * 119.99740 * 359.97438 * 18 16 13 20 20 Si 1.86790 * 119.99794 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47263 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47102 * 119.99912 * 20 18 16 23 23 H 1.48506 * 109.47228 * 239.99902 * 20 18 16 24 24 S 1.75482 * 110.67876 * 0.02562 * 8 7 6 25 25 C 1.39865 * 119.91137 * 180.27363 * 2 1 3 26 26 H 1.09003 * 109.47509 * 269.72506 * 1 2 3 27 27 H 1.08995 * 109.47455 * 29.73039 * 1 2 3 28 28 H 1.09005 * 109.47009 * 149.73102 * 1 2 3 29 29 H 1.08000 * 119.90146 * 0.26856 * 3 2 1 30 30 H 1.07997 * 119.65265 * 180.02562 * 4 3 2 31 31 H 1.07993 * 119.75382 * 179.97438 * 5 4 3 32 32 H 1.07999 * 122.21933 * 359.97059 * 7 6 5 33 33 H 1.09000 * 109.46910 * 299.99998 * 12 11 9 34 34 H 1.08997 * 109.47108 * 59.99440 * 12 11 9 35 35 H 1.09006 * 109.47267 * 59.99765 * 14 13 12 36 36 H 1.08997 * 109.47377 * 179.97438 * 14 13 12 37 37 H 1.09005 * 109.47054 * 299.99931 * 14 13 12 38 38 H 1.09000 * 109.46922 * 59.99896 * 15 13 12 39 39 H 1.08997 * 109.47101 * 180.02562 * 15 13 12 40 40 H 1.08998 * 109.46818 * 300.00612 * 15 13 12 41 41 H 0.96999 * 120.00048 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1922 1.1913 0.0000 4 6 3.5816 1.1982 -0.0050 5 6 4.2814 0.0326 -0.0110 6 6 3.6053 -1.2110 -0.0116 7 6 4.1454 -2.5068 -0.0169 8 6 3.2536 -3.5038 -0.0155 9 6 3.5972 -4.9315 -0.0208 10 8 4.7630 -5.2761 -0.0264 11 8 2.6195 -5.8602 -0.0193 12 6 3.0326 -7.2522 -0.0242 13 6 1.7950 -8.1515 -0.0211 14 6 0.9636 -7.8707 1.2322 15 6 0.9531 -7.8650 -1.2662 16 6 2.2237 -9.5963 -0.0268 17 1 3.2740 -9.8478 -0.0325 18 6 1.2751 -10.5969 -0.0257 19 7 -0.0038 -10.2905 -0.0192 20 14 1.8066 -12.3876 -0.0321 21 1 3.2897 -12.4638 -0.0384 22 1 1.2809 -13.0643 1.1807 23 1 1.2719 -13.0584 -1.2443 24 16 1.6168 -2.8712 -0.0079 25 6 2.2044 -1.2123 -0.0058 26 1 -0.3634 -0.0049 1.0277 27 1 -0.3634 0.8923 -0.5096 28 1 -0.3633 -0.8876 -0.5180 29 1 1.6492 2.1248 0.0044 30 1 4.1112 2.1394 -0.0045 31 1 5.3610 0.0557 -0.0153 32 1 5.2103 -2.6868 -0.0218 33 1 3.6252 -7.4521 -0.9169 34 1 3.6320 -7.4564 0.8630 35 1 0.6535 -6.8257 1.2359 36 1 0.0817 -8.5111 1.2343 37 1 1.5634 -8.0748 2.1193 38 1 1.5454 -8.0650 -2.1591 39 1 0.0711 -8.5054 -1.2637 40 1 0.6431 -6.8200 -1.2625 41 1 -0.6711 -10.9944 -0.0181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808999968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:26 Heat of formation + Delta-G solvation = -54.582740 kcal Electronic energy + Delta-G solvation = -23432.637153 eV Core-core repulsion = 19982.551662 eV Total energy + Delta-G solvation = -3450.085491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23414 -39.70366 -36.82140 -35.59542 -34.85258 -32.91851 -31.31698 -29.95919 -27.33902 -26.23640 -25.62797 -25.27501 -24.40644 -22.91837 -21.15003 -20.01582 -18.89800 -18.30655 -17.08728 -16.34063 -15.90528 -15.90033 -15.60273 -15.23411 -14.84035 -14.52360 -14.46480 -13.49574 -13.46179 -13.30903 -13.06964 -12.81726 -12.81322 -12.46521 -11.97874 -11.88436 -11.56233 -11.51043 -11.29502 -11.22216 -10.99401 -10.75092 -10.68553 -10.43594 -10.39484 -10.16061 -9.94055 -9.75148 -9.44192 -9.35607 -8.77044 -8.76742 -8.39130 -7.86900 -6.03246 -4.14862 0.08534 0.97211 1.28690 1.72804 1.79900 2.98050 3.01026 3.26274 3.34731 3.39422 3.43877 4.35700 4.38531 4.52208 4.61759 4.91821 4.96288 5.07718 5.18493 5.23370 5.29846 5.31221 5.54945 5.55544 5.72962 5.81501 6.02116 6.06247 6.06568 6.13781 6.19233 6.43355 6.56803 6.69659 6.94900 6.96966 7.13095 7.13517 7.38170 7.61048 7.69114 8.03808 8.03872 8.17702 8.37294 8.85141 9.50740 10.98091 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029691 B = 0.002816 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.810316 B = 9942.347529 C =10688.803124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.052 4.052 3 C -0.098 4.098 4 C -0.121 4.121 5 C -0.072 4.072 6 C -0.085 4.085 7 C -0.045 4.045 8 C -0.202 4.202 9 C 0.526 3.474 10 O -0.504 6.504 11 O -0.341 6.341 12 C 0.085 3.915 13 C 0.071 3.929 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.512 4.512 17 H 0.058 0.942 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 S 0.183 5.817 25 C -0.142 4.142 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.155 0.845 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.085 0.915 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 23.357 0.073 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.119 4.119 4 C -0.141 4.141 5 C -0.092 4.092 6 C -0.093 4.093 7 C -0.078 4.078 8 C -0.319 4.319 9 C 0.369 3.631 10 O -0.394 6.394 11 O -0.256 6.256 12 C 0.013 3.987 13 C 0.070 3.930 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.550 4.550 17 H 0.076 0.924 18 C -0.134 4.134 19 N -0.520 5.520 20 Si 0.723 3.277 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 S 0.453 5.547 25 C -0.259 4.259 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.173 0.827 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.104 0.896 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.104 0.896 40 H 0.035 0.965 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.867 22.281 0.073 22.298 hybrid contribution 1.925 -0.499 -0.007 1.988 sum 2.792 21.782 0.066 21.961 Atomic orbital electron populations 1.20880 0.90474 1.03358 1.03036 1.19282 0.95943 0.90403 1.00045 1.20992 0.94304 0.96942 0.99701 1.20662 0.94206 0.98078 1.01186 1.20800 0.99896 0.90291 0.98255 1.18142 0.91946 0.93754 1.05469 1.20222 1.01363 0.89475 0.96725 1.22899 0.98863 0.94977 1.15205 1.19775 0.84237 0.85505 0.73579 1.90843 1.20278 1.82065 1.46260 1.86619 1.37315 1.19303 1.82398 1.23789 1.00760 0.73309 1.00887 1.18262 0.89091 0.91760 0.93864 1.21778 1.02170 0.98034 0.96796 1.21780 1.02172 0.98023 0.96810 1.20964 0.93110 0.89278 1.51628 0.92404 1.24856 0.94848 0.98994 0.94654 1.69837 0.99740 1.32336 1.50057 0.86477 0.78845 0.84715 0.77616 1.19767 1.20944 1.20950 1.84625 1.03201 0.92612 1.74282 1.23180 0.96838 0.98573 1.07282 0.90447 0.90743 0.91238 0.85175 0.85368 0.85338 0.82705 0.92222 0.92226 0.96460 0.89647 0.95771 0.95772 0.89641 0.96467 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.88 36.00 0.36 -0.57 16 2 C -0.05 -0.51 5.90 -104.31 -0.62 -1.13 16 3 C -0.10 -0.78 9.67 -39.62 -0.38 -1.16 16 4 C -0.12 -0.94 9.94 -40.14 -0.40 -1.34 16 5 C -0.07 -0.67 10.03 -39.14 -0.39 -1.06 16 6 C -0.08 -1.02 5.87 -107.13 -0.63 -1.65 16 7 C -0.05 -0.61 9.79 -40.34 -0.39 -1.00 16 8 C -0.20 -3.18 6.32 -37.67 -0.24 -3.42 16 9 C 0.53 10.04 7.93 34.21 0.27 10.31 16 10 O -0.50 -10.46 16.51 -19.32 -0.32 -10.78 16 11 O -0.34 -7.07 8.69 -40.90 -0.36 -7.42 16 12 C 0.08 1.91 4.27 37.16 0.16 2.07 16 13 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 14 C -0.13 -3.16 8.11 37.15 0.30 -2.86 16 15 C -0.13 -3.16 8.11 37.16 0.30 -2.86 16 16 C -0.51 -13.70 8.01 -34.44 -0.28 -13.97 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 19 N -0.88 -23.95 9.35 55.43 0.52 -23.43 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 S 0.18 2.53 22.39 -107.50 -2.41 0.12 16 25 C -0.14 -1.72 6.32 -38.28 -0.24 -1.96 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.58 7.62 -51.93 -0.40 0.18 16 29 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 30 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.16 1.89 7.96 -52.49 -0.42 1.47 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 36 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 40 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 41 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -29.45 355.76 -10.17 -39.62 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.58 Total: -2.07 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.36 Total: -17.23 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.52 Total: -23.43 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.67 Total: -18.21 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.41 Total: 0.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.45 -10.17 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808999968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.967 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds