Wall clock time and date at job start Tue Mar 31 2020 12:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37432 * 119.90921 * 2 1 4 4 C 1.38937 * 120.19413 * 180.23761 * 3 2 1 5 5 C 1.35953 * 120.69505 * 0.05586 * 4 3 2 6 6 C 1.41548 * 120.49131 * 359.96281 * 5 4 3 7 7 C 1.40386 * 128.84543 * 180.02562 * 6 5 4 8 8 C 1.33766 * 115.56390 * 179.97438 * 7 6 5 9 9 C 1.46840 * 124.65768 * 179.97438 * 8 7 6 10 10 O 1.21572 * 120.00239 * 0.02562 * 9 8 7 11 11 O 1.34849 * 119.99641 * 180.02562 * 9 8 7 12 12 C 1.45199 * 116.99794 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47373 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47217 * 300.00161 * 13 12 11 15 15 C 1.53007 * 109.47027 * 59.99875 * 13 12 11 16 16 C 1.50701 * 109.47350 * 179.97438 * 13 12 11 17 17 H 1.07998 * 120.00003 * 359.97438 * 16 13 12 18 18 C 1.37882 * 119.99914 * 180.02562 * 16 13 12 19 19 N 1.31509 * 119.99740 * 359.97438 * 18 16 13 20 20 Si 1.86790 * 119.99794 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47263 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47102 * 119.99912 * 20 18 16 23 23 H 1.48506 * 109.47228 * 239.99902 * 20 18 16 24 24 S 1.75482 * 110.67876 * 0.02562 * 8 7 6 25 25 C 1.39865 * 119.91137 * 180.27363 * 2 1 3 26 26 H 1.09003 * 109.47509 * 269.72506 * 1 2 3 27 27 H 1.08995 * 109.47455 * 29.73039 * 1 2 3 28 28 H 1.09005 * 109.47009 * 149.73102 * 1 2 3 29 29 H 1.08000 * 119.90146 * 0.26856 * 3 2 1 30 30 H 1.07997 * 119.65265 * 180.02562 * 4 3 2 31 31 H 1.07993 * 119.75382 * 179.97438 * 5 4 3 32 32 H 1.07999 * 122.21933 * 359.97059 * 7 6 5 33 33 H 1.09000 * 109.46910 * 299.99998 * 12 11 9 34 34 H 1.08997 * 109.47108 * 59.99440 * 12 11 9 35 35 H 1.09006 * 109.47267 * 59.99765 * 14 13 12 36 36 H 1.08997 * 109.47377 * 179.97438 * 14 13 12 37 37 H 1.09005 * 109.47054 * 299.99931 * 14 13 12 38 38 H 1.09000 * 109.46922 * 59.99896 * 15 13 12 39 39 H 1.08997 * 109.47101 * 180.02562 * 15 13 12 40 40 H 1.08998 * 109.46818 * 300.00612 * 15 13 12 41 41 H 0.96999 * 120.00048 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1922 1.1913 0.0000 4 6 3.5816 1.1982 -0.0050 5 6 4.2814 0.0326 -0.0110 6 6 3.6053 -1.2110 -0.0116 7 6 4.1454 -2.5068 -0.0169 8 6 3.2536 -3.5038 -0.0155 9 6 3.5972 -4.9315 -0.0208 10 8 4.7630 -5.2761 -0.0264 11 8 2.6195 -5.8602 -0.0193 12 6 3.0326 -7.2522 -0.0242 13 6 1.7950 -8.1515 -0.0211 14 6 0.9636 -7.8707 1.2322 15 6 0.9531 -7.8650 -1.2662 16 6 2.2237 -9.5963 -0.0268 17 1 3.2740 -9.8478 -0.0325 18 6 1.2751 -10.5969 -0.0257 19 7 -0.0038 -10.2905 -0.0192 20 14 1.8066 -12.3876 -0.0321 21 1 3.2897 -12.4638 -0.0384 22 1 1.2809 -13.0643 1.1807 23 1 1.2719 -13.0584 -1.2443 24 16 1.6168 -2.8712 -0.0079 25 6 2.2044 -1.2123 -0.0058 26 1 -0.3634 -0.0049 1.0277 27 1 -0.3634 0.8923 -0.5096 28 1 -0.3633 -0.8876 -0.5180 29 1 1.6492 2.1248 0.0044 30 1 4.1112 2.1394 -0.0045 31 1 5.3610 0.0557 -0.0153 32 1 5.2103 -2.6868 -0.0218 33 1 3.6252 -7.4521 -0.9169 34 1 3.6320 -7.4564 0.8630 35 1 0.6535 -6.8257 1.2359 36 1 0.0817 -8.5111 1.2343 37 1 1.5634 -8.0748 2.1193 38 1 1.5454 -8.0650 -2.1591 39 1 0.0711 -8.5054 -1.2637 40 1 0.6431 -6.8200 -1.2625 41 1 -0.6711 -10.9944 -0.0181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808999968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:25 Heat of formation + Delta-G solvation = -67.131687 kcal Electronic energy + Delta-G solvation = -23433.181316 eV Core-core repulsion = 19982.551662 eV Total energy + Delta-G solvation = -3450.629654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57178 -40.73051 -38.47404 -36.80045 -36.47686 -33.59326 -33.31538 -30.96314 -28.00395 -27.85865 -27.61855 -27.24794 -25.67293 -23.87861 -22.14139 -21.13897 -20.80066 -19.50447 -18.23929 -17.85737 -17.58900 -17.50450 -16.75341 -16.38212 -16.19289 -15.53397 -15.33452 -15.01501 -14.80498 -14.77904 -14.18545 -14.08766 -13.74818 -13.68982 -13.38275 -13.20989 -13.09367 -12.88135 -12.71086 -12.61768 -12.38218 -12.27831 -12.16247 -12.15338 -11.94119 -11.80787 -11.60251 -11.35069 -11.28518 -10.77281 -10.59212 -10.43285 -9.65121 -8.77327 -8.06811 -6.25220 -0.91262 0.24551 0.28660 0.74041 0.82287 1.41428 1.43271 1.51814 1.59264 1.66497 2.43596 2.68809 3.16743 3.51921 3.64602 3.84358 3.94864 4.18600 4.20171 4.23193 4.30674 4.42171 4.52328 4.59796 4.65781 4.76072 4.80651 4.82647 4.93940 5.00038 5.14629 5.18024 5.20149 5.25589 5.27400 5.43399 5.45909 5.49585 5.59402 5.61754 5.91417 6.02651 6.13226 6.32994 6.51705 6.79262 7.42880 8.93428 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029691 B = 0.002816 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.810316 B = 9942.347529 C =10688.803124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.116 4.116 5 C -0.072 4.072 6 C -0.112 4.112 7 C -0.019 4.019 8 C -0.244 4.244 9 C 0.527 3.473 10 O -0.530 6.530 11 O -0.346 6.346 12 C 0.096 3.904 13 C 0.063 3.937 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.534 4.534 17 H 0.051 0.949 18 C 0.028 3.972 19 N -0.900 5.900 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.279 1.279 24 S 0.153 5.847 25 C -0.143 4.143 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.163 0.837 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.028 0.972 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 26.588 0.080 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.076 4.076 3 C -0.101 4.101 4 C -0.135 4.135 5 C -0.092 4.092 6 C -0.120 4.120 7 C -0.052 4.052 8 C -0.360 4.360 9 C 0.373 3.627 10 O -0.423 6.423 11 O -0.262 6.262 12 C 0.023 3.977 13 C 0.063 3.937 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.571 4.571 17 H 0.069 0.931 18 C -0.172 4.172 19 N -0.538 5.538 20 Si 0.781 3.219 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.205 1.205 24 S 0.422 5.578 25 C -0.260 4.260 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.184 0.816 30 H 0.183 0.817 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.312 25.521 0.080 25.554 hybrid contribution 1.808 -1.189 -0.009 2.164 sum 3.120 24.332 0.071 24.531 Atomic orbital electron populations 1.20930 0.89302 1.03942 1.03582 1.19647 0.97100 0.90151 1.00717 1.21521 0.94771 0.97460 0.96361 1.21160 0.94322 0.98980 0.99065 1.21169 1.01312 0.89522 0.97200 1.18320 0.92150 0.94085 1.07401 1.20479 1.01447 0.89876 0.93375 1.22621 1.00388 0.93168 1.19869 1.20258 0.83581 0.86461 0.72446 1.90809 1.20959 1.82677 1.47848 1.86601 1.38053 1.18643 1.82938 1.23405 0.99496 0.74459 1.00335 1.18271 0.89917 0.91573 0.93983 1.21628 1.01168 0.98233 0.96631 1.21630 1.01172 0.98222 0.96645 1.21203 0.92943 0.90696 1.52305 0.93105 1.25526 0.94911 1.02506 0.94272 1.69944 1.00382 1.33399 1.50049 0.85555 0.78371 0.80293 0.77689 1.19701 1.20480 1.20492 1.84528 1.02709 0.94893 1.75621 1.23337 0.97133 0.97993 1.07516 0.89884 0.88306 0.92561 0.81610 0.81653 0.83038 0.81939 0.92780 0.92781 0.95293 0.91558 0.95992 0.95998 0.91552 0.95301 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.88 71.23 0.70 -0.90 16 2 C -0.07 -1.21 5.90 -19.66 -0.12 -1.33 16 3 C -0.08 -0.90 9.67 22.25 0.22 -0.68 16 4 C -0.12 -1.22 9.94 21.91 0.22 -1.00 16 5 C -0.07 -1.08 10.03 22.56 0.23 -0.85 16 6 C -0.11 -2.52 5.87 -21.49 -0.13 -2.65 16 7 C -0.02 -0.50 9.79 21.78 0.21 -0.28 16 8 C -0.24 -7.92 6.32 23.51 0.15 -7.77 16 9 C 0.53 20.92 7.93 70.07 0.56 21.48 16 10 O -0.53 -22.85 16.51 19.60 0.32 -22.53 16 11 O -0.35 -14.91 8.69 -57.62 -0.50 -15.41 16 12 C 0.10 4.48 4.27 71.98 0.31 4.78 16 13 C 0.06 3.18 0.58 -52.93 -0.03 3.15 16 14 C -0.12 -5.90 8.11 71.98 0.58 -5.32 16 15 C -0.12 -5.91 8.11 71.98 0.58 -5.32 16 16 C -0.53 -29.13 8.01 25.60 0.21 -28.93 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 18 C 0.03 1.51 5.15 84.66 0.44 1.94 16 19 N -0.90 -49.51 9.35 21.45 0.20 -49.31 16 20 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 S 0.15 4.36 22.39 -56.49 -1.26 3.10 16 25 C -0.14 -3.32 6.32 23.11 0.15 -3.18 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 0.80 8.08 -2.39 -0.02 0.78 16 28 H 0.06 0.90 7.62 -2.38 -0.02 0.88 16 29 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 30 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.16 3.91 7.96 -2.91 -0.02 3.89 16 33 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.03 1.31 7.68 -2.38 -0.02 1.30 16 36 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 37 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 40 H 0.03 1.31 7.68 -2.39 -0.02 1.29 16 41 H 0.26 13.75 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -64.98 355.76 6.09 -58.89 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.03 Total: 7.03 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 4.27 Total: -26.87 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.20 Total: -49.31 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.18 Total: -37.93 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.26 Total: 3.10 kcal Total: -64.98 6.09 -58.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808999968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.242 kcal (2) G-P(sol) polarization free energy of solvation -64.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds