Wall clock time and date at job start Tue Mar 31 2020 12:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38984 * 119.64937 * 2 1 4 4 C 1.37396 * 120.18773 * 180.02562 * 3 2 1 5 5 C 1.39900 * 120.17986 * 359.97232 * 4 3 2 6 6 S 1.75991 * 130.57656 * 180.02562 * 5 4 3 7 7 C 1.75482 * 91.62388 * 179.97438 * 6 5 4 8 8 C 1.46838 * 124.66592 * 179.97438 * 7 6 5 9 9 O 1.21570 * 120.00144 * 180.02562 * 8 7 6 10 10 O 1.34849 * 120.00018 * 0.02905 * 8 7 6 11 11 C 1.45193 * 117.00146 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46976 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47363 * 300.00270 * 12 11 10 14 14 C 1.52997 * 109.46995 * 60.00691 * 12 11 10 15 15 C 1.50705 * 109.47089 * 180.02562 * 12 11 10 16 16 H 1.08004 * 120.00150 * 1.36672 * 15 12 11 17 17 C 1.37873 * 120.00329 * 181.36132 * 15 12 11 18 18 N 1.31517 * 120.00378 * 193.96497 * 17 15 12 19 19 Si 1.86805 * 119.99858 * 13.96545 * 17 15 12 20 20 H 1.48494 * 109.46988 * 84.55311 * 19 17 15 21 21 H 1.48499 * 109.47210 * 204.55866 * 19 17 15 22 22 H 1.48507 * 109.46893 * 324.55533 * 19 17 15 23 23 C 1.33770 * 110.67059 * 359.76537 * 7 6 5 24 24 C 1.40057 * 119.86164 * 0.02584 * 5 4 3 25 25 C 1.35908 * 119.65321 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47010 * 269.97924 * 1 2 3 27 27 H 1.09003 * 109.46884 * 29.97653 * 1 2 3 28 28 H 1.09002 * 109.47111 * 149.97512 * 1 2 3 29 29 H 1.08002 * 119.90543 * 0.04548 * 3 2 1 30 30 H 1.08002 * 119.90540 * 179.97438 * 4 3 2 31 31 H 1.08992 * 109.47423 * 300.00232 * 11 10 8 32 32 H 1.09007 * 109.47156 * 60.00668 * 11 10 8 33 33 H 1.09000 * 109.47178 * 69.31800 * 13 12 11 34 34 H 1.09000 * 109.47225 * 189.31950 * 13 12 11 35 35 H 1.08999 * 109.47136 * 309.31473 * 13 12 11 36 36 H 1.09001 * 109.47501 * 59.99817 * 14 12 11 37 37 H 1.09000 * 109.47017 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.46728 * 299.99622 * 14 12 11 39 39 H 0.96996 * 119.99868 * 179.97438 * 18 17 15 40 40 H 1.08003 * 122.21554 * 180.24616 * 23 7 6 41 41 H 1.07998 * 119.75229 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2079 0.0000 4 6 3.5685 1.2208 -0.0005 5 6 4.2831 0.0181 -0.0005 6 16 6.0170 -0.2832 -0.0005 7 6 5.7657 -2.0200 0.0004 8 6 6.8413 -3.0195 0.0002 9 8 6.5700 -4.2046 0.0004 10 8 8.1302 -2.6230 0.0000 11 6 9.1407 -3.6657 0.0004 12 6 10.5315 -3.0280 -0.0006 13 6 10.6940 -2.1608 -1.2505 14 6 10.6949 -2.1590 1.2480 15 6 11.5803 -4.1102 -0.0008 16 1 11.2846 -5.1488 -0.0225 17 6 12.9172 -3.7746 0.0267 18 7 13.8289 -4.6819 -0.2478 19 14 13.4339 -2.0310 0.4540 20 1 13.5029 -1.8828 1.9299 21 1 14.7684 -1.7519 -0.1345 22 1 12.4410 -1.0722 -0.0939 23 6 4.4594 -2.3080 0.0057 24 6 3.5951 -1.2019 -0.0005 25 6 2.1794 -1.1811 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6473 2.1390 0.0007 30 1 4.0981 2.1620 -0.0009 31 1 9.0246 -4.2838 0.8906 32 1 9.0246 -4.2846 -0.8894 33 1 10.0495 -1.2853 -1.1716 34 1 11.7323 -1.8408 -1.3382 35 1 10.4162 -2.7383 -2.1321 36 1 10.5791 -2.7769 2.1385 37 1 11.6859 -1.7051 1.2475 38 1 9.9364 -1.3763 1.2477 39 1 14.7694 -4.4456 -0.2288 40 1 4.0939 -3.3244 0.0110 41 1 1.6298 -2.1107 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810675532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:52 Heat of formation + Delta-G solvation = -34.421657 kcal Electronic energy + Delta-G solvation = -23328.564904 eV Core-core repulsion = 19879.353663 eV Total energy + Delta-G solvation = -3449.211241 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.34467 -39.82476 -37.08897 -35.85495 -35.08139 -32.60039 -31.75742 -30.36725 -27.53336 -26.65639 -26.27869 -25.10860 -24.48769 -22.86016 -21.64465 -19.75025 -19.17897 -18.63995 -17.22011 -16.40387 -16.05523 -16.02425 -15.61461 -15.34723 -15.17896 -14.69930 -14.45153 -13.92577 -13.63243 -13.53848 -13.14634 -13.00559 -12.87163 -12.60428 -12.39473 -12.11365 -12.04217 -11.93864 -11.74594 -11.52721 -11.20205 -10.90404 -10.64209 -10.37622 -10.30894 -10.22223 -10.07663 -9.94584 -9.79857 -9.12723 -8.78971 -8.66865 -8.48320 -7.96376 -6.17347 -4.15886 0.00689 0.88785 1.20014 1.65855 1.70351 2.88055 2.88288 3.26614 3.34614 3.35274 3.39935 4.28917 4.35559 4.43117 4.54836 4.80828 4.90294 4.94671 5.14598 5.15139 5.20724 5.25230 5.40936 5.59278 5.61808 5.64205 5.73114 5.86150 5.90949 6.00637 6.10383 6.18744 6.23038 6.49536 6.51291 6.56053 6.67202 6.77053 6.78491 6.95335 7.20156 7.42109 7.67314 7.95385 8.39814 8.84800 9.45924 10.95242 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.032681 B = 0.002781 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.553013 B =10064.228968 C =10708.408346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.092 4.092 4 C -0.083 4.083 5 C -0.144 4.144 6 S 0.175 5.825 7 C -0.202 4.202 8 C 0.528 3.472 9 O -0.499 6.499 10 O -0.347 6.347 11 C 0.094 3.906 12 C 0.044 3.956 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.519 4.519 16 H 0.076 0.924 17 C 0.079 3.921 18 N -0.889 5.889 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.304 1.304 22 H -0.246 1.246 23 C -0.043 4.043 24 C -0.084 4.084 25 C -0.068 4.068 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.266 0.734 40 H 0.156 0.844 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.343 13.202 0.537 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.113 4.113 4 C -0.105 4.105 5 C -0.261 4.261 6 S 0.444 5.556 7 C -0.319 4.319 8 C 0.371 3.629 9 O -0.389 6.389 10 O -0.263 6.263 11 C 0.022 3.978 12 C 0.043 3.957 13 C -0.198 4.198 14 C -0.204 4.204 15 C -0.556 4.556 16 H 0.094 0.906 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.716 3.284 20 H -0.212 1.212 21 H -0.233 1.233 22 H -0.172 1.172 23 C -0.076 4.076 24 C -0.092 4.092 25 C -0.088 4.088 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.174 0.826 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.746 13.645 0.509 27.392 hybrid contribution -0.633 -0.287 0.320 0.765 sum -24.379 13.358 0.829 27.811 Atomic orbital electron populations 1.20808 0.90629 1.03028 1.02550 1.19443 0.96449 0.92850 1.00741 1.21019 0.93369 0.97856 0.99072 1.20482 0.93829 0.95568 1.00650 1.23255 0.98430 0.97429 1.06946 1.84607 0.99033 0.97312 1.74605 1.22827 0.95765 0.97783 1.15491 1.19716 0.83006 0.86538 0.73639 1.90865 1.84547 1.17599 1.45903 1.86573 1.14453 1.42478 1.82762 1.23525 0.84799 0.87530 1.01972 1.18599 0.89763 0.94865 0.92508 1.22237 1.00856 0.98177 0.98540 1.22302 0.99385 0.99170 0.99530 1.20639 0.89180 0.92927 1.52882 0.90561 1.24908 0.96317 0.97257 0.93959 1.69940 1.01194 1.34679 1.46741 0.87294 0.76315 0.86328 0.78418 1.21199 1.23288 1.17168 1.20228 0.90412 1.00469 0.96454 1.18117 0.94409 0.91235 1.05436 1.20676 0.91229 0.98341 0.98554 0.91005 0.91351 0.91353 0.85078 0.85158 0.91448 0.91346 0.94924 0.92602 0.93721 0.93107 0.94086 0.94089 0.92430 0.82617 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.99 36.01 0.36 -0.19 16 2 C -0.09 -0.70 5.83 -105.18 -0.61 -1.31 16 3 C -0.09 -0.67 9.67 -39.61 -0.38 -1.06 16 4 C -0.08 -0.73 10.07 -39.27 -0.40 -1.13 16 5 C -0.14 -1.62 6.50 -38.28 -0.25 -1.86 16 6 S 0.18 2.23 23.05 -107.50 -2.48 -0.25 16 7 C -0.20 -2.96 6.32 -37.67 -0.24 -3.20 16 8 C 0.53 9.44 7.93 34.21 0.27 9.71 16 9 O -0.50 -9.88 16.51 -19.32 -0.32 -10.20 16 10 O -0.35 -6.64 8.88 -40.90 -0.36 -7.00 16 11 C 0.09 1.99 4.26 37.16 0.16 2.15 16 12 C 0.04 1.01 0.58 -155.66 -0.09 0.92 16 13 C -0.14 -3.09 7.58 37.16 0.28 -2.81 16 14 C -0.15 -3.21 7.55 37.16 0.28 -2.93 16 15 C -0.52 -14.21 8.62 -34.44 -0.30 -14.51 16 16 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.08 2.22 5.32 -17.82 -0.09 2.12 16 18 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 19 Si 0.88 21.54 22.79 -169.99 -3.87 17.66 16 20 H -0.28 -6.87 7.10 56.52 0.40 -6.47 16 21 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.25 -5.55 4.65 56.52 0.26 -5.29 16 23 C -0.04 -0.54 9.79 -40.34 -0.40 -0.94 16 24 C -0.08 -0.94 5.87 -107.13 -0.63 -1.57 16 25 C -0.07 -0.60 9.64 -39.14 -0.38 -0.98 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 28 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 29 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 34 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 35 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.93 2.25 -51.93 -0.12 0.81 16 38 H 0.04 0.80 7.68 -51.93 -0.40 0.40 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.16 1.78 7.96 -52.48 -0.42 1.37 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -31.21 346.99 -8.92 -40.13 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.48 Total: -2.05 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.41 Total: -17.58 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.77 Total: -25.95 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.68 Total: -17.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -3.87 Total: 17.66 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.48 Total: -0.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.21 -8.92 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810675532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.707 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds