Wall clock time and date at job start Tue Mar 31 2020 12:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38984 * 119.64937 * 2 1 4 4 C 1.37396 * 120.18773 * 180.02562 * 3 2 1 5 5 C 1.39900 * 120.17986 * 359.97232 * 4 3 2 6 6 S 1.75991 * 130.57656 * 180.02562 * 5 4 3 7 7 C 1.75482 * 91.62388 * 179.97438 * 6 5 4 8 8 C 1.46838 * 124.66592 * 179.97438 * 7 6 5 9 9 O 1.21570 * 120.00144 * 180.02562 * 8 7 6 10 10 O 1.34849 * 120.00018 * 0.02905 * 8 7 6 11 11 C 1.45193 * 117.00146 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46976 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47363 * 300.00270 * 12 11 10 14 14 C 1.52997 * 109.46995 * 60.00691 * 12 11 10 15 15 C 1.50705 * 109.47089 * 180.02562 * 12 11 10 16 16 H 1.08004 * 120.00150 * 1.36672 * 15 12 11 17 17 C 1.37873 * 120.00329 * 181.36132 * 15 12 11 18 18 N 1.31517 * 120.00378 * 193.96497 * 17 15 12 19 19 Si 1.86805 * 119.99858 * 13.96545 * 17 15 12 20 20 H 1.48494 * 109.46988 * 84.55311 * 19 17 15 21 21 H 1.48499 * 109.47210 * 204.55866 * 19 17 15 22 22 H 1.48507 * 109.46893 * 324.55533 * 19 17 15 23 23 C 1.33770 * 110.67059 * 359.76537 * 7 6 5 24 24 C 1.40057 * 119.86164 * 0.02584 * 5 4 3 25 25 C 1.35908 * 119.65321 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47010 * 269.97924 * 1 2 3 27 27 H 1.09003 * 109.46884 * 29.97653 * 1 2 3 28 28 H 1.09002 * 109.47111 * 149.97512 * 1 2 3 29 29 H 1.08002 * 119.90543 * 0.04548 * 3 2 1 30 30 H 1.08002 * 119.90540 * 179.97438 * 4 3 2 31 31 H 1.08992 * 109.47423 * 300.00232 * 11 10 8 32 32 H 1.09007 * 109.47156 * 60.00668 * 11 10 8 33 33 H 1.09000 * 109.47178 * 69.31800 * 13 12 11 34 34 H 1.09000 * 109.47225 * 189.31950 * 13 12 11 35 35 H 1.08999 * 109.47136 * 309.31473 * 13 12 11 36 36 H 1.09001 * 109.47501 * 59.99817 * 14 12 11 37 37 H 1.09000 * 109.47017 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.46728 * 299.99622 * 14 12 11 39 39 H 0.96996 * 119.99868 * 179.97438 * 18 17 15 40 40 H 1.08003 * 122.21554 * 180.24616 * 23 7 6 41 41 H 1.07998 * 119.75229 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2079 0.0000 4 6 3.5685 1.2208 -0.0005 5 6 4.2831 0.0181 -0.0005 6 16 6.0170 -0.2832 -0.0005 7 6 5.7657 -2.0200 0.0004 8 6 6.8413 -3.0195 0.0002 9 8 6.5700 -4.2046 0.0004 10 8 8.1302 -2.6230 0.0000 11 6 9.1407 -3.6657 0.0004 12 6 10.5315 -3.0280 -0.0006 13 6 10.6940 -2.1608 -1.2505 14 6 10.6949 -2.1590 1.2480 15 6 11.5803 -4.1102 -0.0008 16 1 11.2846 -5.1488 -0.0225 17 6 12.9172 -3.7746 0.0267 18 7 13.8289 -4.6819 -0.2478 19 14 13.4339 -2.0310 0.4540 20 1 13.5029 -1.8828 1.9299 21 1 14.7684 -1.7519 -0.1345 22 1 12.4410 -1.0722 -0.0939 23 6 4.4594 -2.3080 0.0057 24 6 3.5951 -1.2019 -0.0005 25 6 2.1794 -1.1811 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6473 2.1390 0.0007 30 1 4.0981 2.1620 -0.0009 31 1 9.0246 -4.2838 0.8906 32 1 9.0246 -4.2846 -0.8894 33 1 10.0495 -1.2853 -1.1716 34 1 11.7323 -1.8408 -1.3382 35 1 10.4162 -2.7383 -2.1321 36 1 10.5791 -2.7769 2.1385 37 1 11.6859 -1.7051 1.2475 38 1 9.9364 -1.3763 1.2477 39 1 14.7694 -4.4456 -0.2288 40 1 4.0939 -3.3244 0.0110 41 1 1.6298 -2.1107 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810675532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:51 Heat of formation + Delta-G solvation = -50.864108 kcal Electronic energy + Delta-G solvation = -23329.277902 eV Core-core repulsion = 19879.353663 eV Total energy + Delta-G solvation = -3449.924239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61786 -40.76431 -38.68124 -36.96127 -36.58425 -33.88425 -33.23158 -31.23110 -28.51500 -28.05467 -27.76657 -27.08013 -25.76451 -23.55178 -22.74032 -21.06450 -20.67757 -19.77831 -18.35840 -17.99697 -17.61641 -17.57078 -17.19419 -16.30008 -16.21616 -15.52010 -15.35039 -15.11291 -14.96885 -14.78966 -14.61657 -14.26586 -13.98365 -13.89194 -13.77809 -13.66741 -13.38990 -13.00599 -12.73519 -12.45632 -12.34962 -12.20427 -12.05714 -12.00180 -11.92059 -11.83092 -11.67929 -11.54691 -11.11737 -10.69340 -10.65604 -10.45807 -9.58856 -8.79191 -8.35635 -6.38445 -0.92652 0.21408 0.27791 0.73712 0.79527 1.34634 1.36749 1.48245 1.48736 1.65630 2.30949 2.64291 2.99952 3.44829 3.66185 3.85941 3.89376 3.96578 4.07563 4.23299 4.24288 4.33337 4.45583 4.53396 4.61955 4.67298 4.75126 4.77797 4.80852 4.89530 4.92551 5.03158 5.05247 5.10038 5.19077 5.22670 5.29913 5.33188 5.39308 5.59603 5.61672 5.68623 5.89006 6.22197 6.48373 6.64258 7.26660 8.80752 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.032681 B = 0.002781 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.553013 B =10064.228968 C =10708.408346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.076 4.076 4 C -0.096 4.096 5 C -0.146 4.146 6 S 0.162 5.838 7 C -0.240 4.240 8 C 0.530 3.470 9 O -0.529 6.529 10 O -0.344 6.344 11 C 0.105 3.895 12 C 0.039 3.961 13 C -0.138 4.138 14 C -0.145 4.145 15 C -0.522 4.522 16 H 0.035 0.965 17 C 0.024 3.976 18 N -0.939 5.939 19 Si 0.940 3.060 20 H -0.278 1.278 21 H -0.309 1.309 22 H -0.212 1.212 23 C -0.021 4.021 24 C -0.108 4.108 25 C -0.072 4.072 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.150 0.850 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.267 0.733 40 H 0.161 0.839 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.713 16.895 0.813 33.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.097 4.097 4 C -0.118 4.118 5 C -0.262 4.262 6 S 0.431 5.569 7 C -0.357 4.357 8 C 0.375 3.625 9 O -0.421 6.421 10 O -0.260 6.260 11 C 0.032 3.968 12 C 0.038 3.962 13 C -0.196 4.196 14 C -0.202 4.202 15 C -0.560 4.560 16 H 0.053 0.947 17 C -0.174 4.174 18 N -0.577 5.577 19 Si 0.769 3.231 20 H -0.205 1.205 21 H -0.238 1.238 22 H -0.136 1.136 23 C -0.054 4.054 24 C -0.116 4.116 25 C -0.092 4.092 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.183 0.817 30 H 0.168 0.832 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.178 0.822 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.148 17.351 0.787 32.229 hybrid contribution 0.103 -1.446 0.216 1.465 sum -27.045 15.906 1.002 31.392 Atomic orbital electron populations 1.20881 0.88345 1.04196 1.03508 1.19866 0.98114 0.92382 0.99015 1.21507 0.92868 0.99276 0.96093 1.20830 0.94655 0.95454 1.00885 1.23421 0.97277 0.98473 1.07062 1.84422 1.01064 0.95832 1.75554 1.22556 0.95217 0.98183 1.19718 1.20203 0.82846 0.87002 0.72443 1.90840 1.84700 1.19008 1.47589 1.86542 1.14949 1.41317 1.83205 1.23115 0.85004 0.87657 1.01074 1.18537 0.89335 0.94134 0.94153 1.22173 1.00936 0.98838 0.97623 1.22249 0.99999 0.99529 0.98432 1.20873 0.90661 0.92449 1.52020 0.94709 1.25740 0.96243 1.01644 0.93771 1.70076 1.01644 1.37256 1.48765 0.86372 0.76280 0.81972 0.78481 1.20513 1.23776 1.13622 1.20450 0.90022 1.01365 0.93578 1.18240 0.95473 0.90648 1.07212 1.20974 0.90217 0.99983 0.98060 0.90012 0.89792 0.90723 0.81689 0.83249 0.92300 0.92523 0.92286 0.93255 0.93936 0.93212 0.94392 0.91407 0.92353 0.82173 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 9.99 71.24 0.71 0.13 16 2 C -0.09 -1.02 5.83 -20.23 -0.12 -1.14 16 3 C -0.08 -0.78 9.67 22.25 0.22 -0.57 16 4 C -0.10 -1.38 10.07 22.47 0.23 -1.16 16 5 C -0.15 -3.00 6.50 23.11 0.15 -2.85 16 6 S 0.16 3.99 23.05 -56.49 -1.30 2.69 16 7 C -0.24 -7.06 6.32 23.51 0.15 -6.91 16 8 C 0.53 19.30 7.93 70.07 0.56 19.86 16 9 O -0.53 -21.69 16.51 19.61 0.32 -21.37 16 10 O -0.34 -13.20 8.88 -57.62 -0.51 -13.71 16 11 C 0.10 4.54 4.26 71.98 0.31 4.85 16 12 C 0.04 1.81 0.58 -52.93 -0.03 1.78 16 13 C -0.14 -5.91 7.58 71.98 0.55 -5.36 16 14 C -0.15 -6.11 7.55 71.98 0.54 -5.57 16 15 C -0.52 -29.55 8.62 25.60 0.22 -29.33 16 16 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 17 C 0.02 1.41 5.32 84.65 0.45 1.86 16 18 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 19 Si 0.94 44.03 22.79 68.60 1.56 45.59 16 20 H -0.28 -12.69 7.10 99.48 0.71 -11.99 16 21 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 22 H -0.21 -8.78 4.65 99.48 0.46 -8.32 16 23 C -0.02 -0.51 9.79 21.78 0.21 -0.30 16 24 C -0.11 -2.26 5.87 -21.49 -0.13 -2.38 16 25 C -0.07 -1.08 9.64 22.55 0.22 -0.86 16 26 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.08 0.21 8.08 -2.39 -0.02 0.20 16 28 H 0.07 0.33 8.07 -2.39 -0.02 0.31 16 29 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 30 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 2.54 8.14 -2.38 -0.02 2.53 16 33 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 34 H 0.05 2.15 4.30 -2.39 -0.01 2.14 16 35 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.61 2.25 -2.39 -0.01 1.61 16 38 H 0.07 2.48 7.68 -2.39 -0.02 2.46 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.16 3.64 7.96 -2.91 -0.02 3.62 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -70.07 346.99 5.40 -64.67 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.80 Total: 8.18 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.23 Total: -27.94 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.30 Total: -58.11 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.19 Total: -35.08 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.56 Total: 45.59 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.30 Total: 2.69 kcal Total: -70.07 5.40 -64.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810675532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.804 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds