Wall clock time and date at job start Tue Mar 31 2020 12:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.46220 * 126.96160 * 2 1 4 4 C 1.39749 * 134.12228 * 0.03744 * 3 2 1 5 5 C 1.37787 * 119.57209 * 179.97438 * 4 3 2 6 6 F 1.35106 * 119.87377 * 179.97438 * 5 4 3 7 7 C 1.39055 * 120.25093 * 0.02562 * 5 4 3 8 8 C 1.37745 * 120.72801 * 359.97438 * 7 5 4 9 9 C 1.39010 * 120.03308 * 359.97438 * 8 7 5 10 10 O 1.34785 * 133.11470 * 180.37725 * 9 8 7 11 11 C 1.34947 * 110.85763 * 180.10897 * 10 9 8 12 12 C 1.46811 * 125.14073 * 179.81076 * 11 10 9 13 13 O 1.21577 * 119.99964 * 179.70020 * 12 11 10 14 14 O 1.34854 * 119.99883 * 359.70447 * 12 11 10 15 15 C 1.45198 * 116.99813 * 177.70955 * 14 12 11 16 16 C 1.50705 * 112.84845 * 65.17619 * 15 14 12 17 17 H 1.08001 * 119.99507 * 242.51158 * 16 15 14 18 18 C 1.37878 * 120.00360 * 62.51669 * 16 15 14 19 19 N 1.31519 * 119.99506 * 353.76501 * 18 16 15 20 20 Si 1.86799 * 119.99995 * 173.76992 * 18 16 15 21 21 H 1.48506 * 109.46985 * 90.00017 * 20 18 16 22 22 H 1.48505 * 109.46704 * 209.99299 * 20 18 16 23 23 H 1.48495 * 109.47086 * 329.99628 * 20 18 16 24 24 C 1.53779 * 113.61572 * 293.97637 * 15 14 12 25 25 C 1.53957 * 87.01863 * 220.04966 * 24 15 14 26 26 C 1.53779 * 87.11265 * 25.36184 * 25 24 15 27 27 H 1.09006 * 109.47085 * 270.02434 * 1 2 3 28 28 H 1.08998 * 109.47571 * 30.02334 * 1 2 3 29 29 H 1.09000 * 109.47382 * 150.03135 * 1 2 3 30 30 H 1.07996 * 120.21833 * 359.93451 * 4 3 2 31 31 H 1.08001 * 119.63237 * 179.97438 * 7 5 4 32 32 H 1.08008 * 119.98467 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99173 * 185.02629 * 19 18 16 34 34 H 1.09002 * 113.61353 * 334.56723 * 24 15 14 35 35 H 1.09002 * 113.61323 * 105.47392 * 24 15 14 36 36 H 1.09007 * 113.53713 * 270.81060 * 25 24 15 37 37 H 1.09005 * 113.74419 * 139.94737 * 25 24 15 38 38 H 1.08997 * 113.61244 * 220.08720 * 26 25 24 39 39 H 1.09001 * 113.68709 * 89.19921 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1684 0.0000 4 6 2.1696 2.5490 0.0007 5 6 3.2481 3.4065 0.0010 6 9 3.0457 4.7423 0.0011 7 6 4.5440 2.9022 0.0001 8 6 4.7706 1.5436 -0.0006 9 6 3.6979 0.6593 0.0002 10 8 3.6130 -0.6858 0.0063 11 6 2.3242 -1.0858 0.0017 12 6 1.8730 -2.4829 0.0022 13 8 0.6843 -2.7378 0.0032 14 8 2.7772 -3.4834 0.0016 15 6 2.2601 -4.8392 0.0539 16 6 1.4688 -5.2114 -1.1735 17 1 0.4212 -5.4591 -1.0859 18 6 2.0822 -5.2359 -2.4080 19 7 3.3225 -4.8173 -2.5344 20 14 1.1514 -5.8634 -3.9011 21 1 0.4414 -4.7335 -4.5527 22 1 2.1083 -6.4673 -4.8630 23 1 0.1649 -6.8882 -3.4747 24 6 1.5451 -5.1754 1.3732 25 6 2.2205 -6.5566 1.2940 26 6 3.3154 -5.8863 0.4474 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5133 30 1 1.1634 2.9413 0.0003 31 1 5.3821 3.5835 -0.0001 32 1 5.7821 1.1650 -0.0017 33 1 3.7298 -4.7657 -3.4132 34 1 1.8806 -4.5730 2.2175 35 1 0.4594 -5.2135 1.2841 36 1 1.6363 -7.2961 0.7462 37 1 2.5771 -6.9266 2.2554 38 1 3.6568 -6.4975 -0.3880 39 1 4.1365 -5.4784 1.0369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:31 Heat of formation + Delta-G solvation = -77.368807 kcal Electronic energy + Delta-G solvation = -26491.380666 eV Core-core repulsion = 22474.093921 eV Total energy + Delta-G solvation = -4017.286745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.00657 -42.42061 -39.33490 -37.69499 -37.13780 -34.55869 -33.65539 -32.37183 -30.52156 -29.79733 -27.61597 -26.26323 -24.69850 -24.56560 -22.96034 -22.65650 -21.01340 -19.87424 -18.66381 -18.23890 -17.40546 -16.85565 -16.59695 -16.34826 -15.60155 -15.55756 -15.23508 -14.84533 -14.37599 -14.23939 -14.01160 -13.88262 -13.61321 -13.22782 -12.98390 -12.81893 -12.52399 -12.33393 -12.00212 -11.90316 -11.67119 -11.18479 -11.10415 -11.04166 -10.97572 -10.58182 -10.34219 -10.02593 -10.00434 -9.89992 -9.66658 -8.90693 -8.66476 -8.64690 -8.55482 -8.19171 -6.18058 -4.31895 0.49138 1.03318 1.88253 2.60431 3.22230 3.29725 3.33265 3.36988 3.56703 3.72204 4.08090 4.29311 4.40882 4.55418 4.76461 4.90605 5.10218 5.14202 5.36668 5.50336 5.52673 5.68680 5.73127 5.79207 5.84180 5.88217 5.90669 6.01803 6.10510 6.16551 6.31003 6.44182 6.48653 6.50911 6.58323 6.84341 7.04647 7.08071 7.21560 7.45428 7.61133 7.76970 8.16764 8.70956 8.93639 9.38698 10.85840 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.003727 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.466784 B = 7510.657657 C = 7807.731997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.106 4.106 3 C -0.111 4.111 4 C -0.097 4.097 5 C 0.074 3.926 6 F -0.139 7.139 7 C -0.124 4.124 8 C -0.076 4.076 9 C 0.058 3.942 10 O -0.161 6.161 11 C 0.026 3.974 12 C 0.541 3.459 13 O -0.476 6.476 14 O -0.327 6.327 15 C 0.237 3.763 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.076 3.924 19 N -0.857 5.857 20 Si 0.894 3.106 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.160 4.160 25 C -0.130 4.130 26 C -0.107 4.107 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.265 0.735 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 11.889 5.802 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.112 4.112 4 C -0.116 4.116 5 C 0.055 3.945 6 F -0.118 7.118 7 C -0.142 4.142 8 C -0.094 4.094 9 C 0.009 3.991 10 O -0.061 6.061 11 C -0.023 4.023 12 C 0.383 3.617 13 O -0.366 6.366 14 O -0.242 6.242 15 C 0.204 3.796 16 C -0.555 4.555 17 H 0.089 0.911 18 C -0.131 4.131 19 N -0.493 5.493 20 Si 0.721 3.279 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.197 4.197 25 C -0.168 4.168 26 C -0.145 4.145 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.235 11.554 5.687 12.937 hybrid contribution -0.460 0.137 -0.996 1.105 sum 0.775 11.691 4.691 12.620 Atomic orbital electron populations 1.20427 0.87230 1.04054 1.02978 1.21270 0.97124 0.88770 1.03639 1.19485 0.92716 0.93243 1.05728 1.20392 0.99109 0.90599 1.01516 1.17288 0.93736 0.77268 1.06193 1.91498 1.95870 1.30104 1.94310 1.20863 0.95878 0.94827 1.02656 1.19787 0.97485 0.90010 1.02131 1.19804 0.95219 0.82077 1.01977 1.84250 1.27315 1.19597 1.74909 1.21580 0.80614 0.93756 1.06315 1.19018 0.84954 0.83035 0.74696 1.90809 1.16812 1.83056 1.45895 1.86708 1.39433 1.17738 1.80340 1.21390 0.91642 0.74319 0.92278 1.20958 0.96391 1.47516 0.90628 0.91087 1.25111 0.94616 0.94099 0.99243 1.70043 1.12314 1.43039 1.23862 0.86547 0.79748 0.79448 0.82182 1.20421 1.20915 1.19366 1.23578 1.00607 0.96870 0.98674 1.22561 0.99049 0.96438 0.98746 1.22906 0.95957 0.97031 0.98558 0.90646 0.91557 0.88552 0.84100 0.83491 0.83600 0.92542 0.92108 0.91548 0.90097 0.92826 0.90585 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.81 36.01 0.35 -0.97 16 2 C -0.11 -1.82 6.39 -102.26 -0.65 -2.47 16 3 C -0.11 -1.69 6.36 -105.20 -0.67 -2.36 16 4 C -0.10 -1.22 10.08 -39.18 -0.40 -1.62 16 5 C 0.07 0.87 7.29 -39.44 -0.29 0.59 16 6 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 7 C -0.12 -1.29 9.99 -39.46 -0.39 -1.69 16 8 C -0.08 -0.91 10.06 -39.48 -0.40 -1.31 16 9 C 0.06 0.93 7.40 -38.36 -0.28 0.64 16 10 O -0.16 -3.12 10.60 1.78 0.02 -3.10 16 11 C 0.03 0.53 7.10 -36.96 -0.26 0.27 16 12 C 0.54 12.70 7.50 34.20 0.26 12.96 16 13 O -0.48 -11.43 13.12 -19.32 -0.25 -11.68 16 14 O -0.33 -8.35 9.77 -42.75 -0.42 -8.76 16 15 C 0.24 5.85 0.47 -90.96 -0.04 5.81 16 16 C -0.52 -13.89 7.09 -34.44 -0.24 -14.13 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.08 2.05 5.30 -17.82 -0.09 1.96 16 19 N -0.86 -23.91 12.79 55.43 0.71 -23.20 16 20 Si 0.89 20.85 29.55 -169.99 -5.02 15.82 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 C -0.16 -3.40 6.57 -25.83 -0.17 -3.57 16 25 C -0.13 -2.53 7.81 -25.83 -0.20 -2.73 16 26 C -0.11 -2.39 7.28 -25.92 -0.19 -2.58 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.62 6.38 -51.93 -0.33 1.29 16 30 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 33 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.82 7.98 -51.93 -0.41 1.40 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -29.78 342.51 -7.96 -37.73 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.52 Total: 0.83 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.68 Total: -11.22 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.71 Total: -23.20 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.65 Total: -23.55 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.78 -7.96 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.636 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds