Wall clock time and date at job start Tue Mar 31 2020 11:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00430 * 2 1 4 4 H 1.48500 * 109.47217 * 240.00366 * 3 2 1 5 5 H 1.48506 * 109.46740 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47461 * 119.99670 * 3 2 1 7 7 C 1.37882 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99606 * 173.98071 * 7 2 1 9 9 C 1.50702 * 120.00077 * 353.98897 * 7 2 1 10 10 O 1.45201 * 112.90895 * 66.14413 * 9 7 2 11 11 C 1.34230 * 116.99900 * 54.04176 * 10 9 7 12 12 O 1.20834 * 119.99883 * 5.34288 * 11 10 9 13 13 C 1.50699 * 120.00270 * 185.34142 * 11 10 9 14 14 C 1.50694 * 109.47222 * 180.02562 * 13 11 10 15 15 C 1.33977 * 126.90984 * 265.02404 * 14 13 11 16 16 O 1.34473 * 110.15701 * 179.97438 * 15 14 13 17 17 C 1.34813 * 110.88883 * 0.02562 * 16 15 14 18 18 C 1.38932 * 133.46670 * 180.02562 * 17 16 15 19 19 C 1.38043 * 119.79848 * 179.97438 * 18 17 16 20 20 F 1.35108 * 119.68662 * 179.97438 * 19 18 17 21 21 C 1.38953 * 120.63212 * 359.97438 * 19 18 17 22 22 C 1.36717 * 120.38740 * 359.97438 * 21 19 18 23 23 C 1.39399 * 119.75455 * 359.77309 * 22 21 19 24 24 C 1.53779 * 113.61052 * 294.89822 * 9 7 2 25 25 C 1.53782 * 87.16989 * 220.05949 * 24 9 7 26 26 C 1.53778 * 87.08268 * 25.39145 * 25 24 9 27 27 H 0.96996 * 119.99805 * 5.03421 * 1 2 3 28 28 H 1.08995 * 109.46873 * 300.00578 * 13 11 10 29 29 H 1.09007 * 109.46796 * 60.00027 * 13 11 10 30 30 H 1.08002 * 124.91897 * 359.96282 * 15 14 13 31 31 H 1.08003 * 120.09482 * 359.93063 * 18 17 16 32 32 H 1.07994 * 119.80494 * 180.02562 * 21 19 18 33 33 H 1.08009 * 120.12129 * 180.02562 * 22 21 19 34 34 H 1.08999 * 113.61894 * 105.46946 * 24 9 7 35 35 H 1.09005 * 113.61461 * 334.64664 * 24 9 7 36 36 H 1.09005 * 113.61629 * 139.93903 * 25 24 9 37 37 H 1.08998 * 113.61617 * 270.75683 * 25 24 9 38 38 H 1.09002 * 113.61776 * 89.11449 * 26 25 24 39 39 H 1.09002 * 113.61353 * 219.93765 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0800 -1.1967 -0.0975 9 6 1.2572 -2.4956 0.1378 10 8 0.3988 -2.7771 -0.9990 11 6 0.9703 -2.7589 -2.2134 12 8 2.1652 -2.6118 -2.3166 13 6 0.1218 -2.9220 -3.4481 14 6 0.9995 -2.8660 -4.6718 15 6 1.2596 -1.7903 -5.4269 16 8 2.0854 -2.1208 -6.4354 17 6 2.4037 -3.4299 -6.3867 18 6 3.2017 -4.2495 -7.1752 19 6 3.3336 -5.5870 -6.8603 20 9 4.1098 -6.3820 -7.6289 21 6 2.6758 -6.1235 -5.7602 22 6 1.8872 -5.3321 -4.9722 23 6 1.7467 -3.9781 -5.2724 24 6 0.5553 -2.6625 1.4959 25 6 1.0004 -4.1341 1.4590 26 6 2.1508 -3.6814 0.5444 27 1 -0.4849 0.8368 -0.0737 28 1 -0.3905 -3.8834 -3.4124 29 1 -0.6145 -2.1194 -3.4915 30 1 0.8632 -0.8012 -5.2512 31 1 3.7166 -3.8414 -8.0324 32 1 2.7888 -7.1717 -5.5258 33 1 1.3781 -5.7536 -4.1179 34 1 -0.5257 -2.5320 1.4477 35 1 1.0158 -2.0871 2.2990 36 1 1.3340 -4.5137 2.4248 37 1 0.2851 -4.7945 0.9688 38 1 3.0486 -3.3841 1.0865 39 1 2.3587 -4.3741 -0.2711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:08 Heat of formation + Delta-G solvation = -75.726567 kcal Electronic energy + Delta-G solvation = -26485.316953 eV Core-core repulsion = 22468.101421 eV Total energy + Delta-G solvation = -4017.215532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.03913 -42.46240 -39.32357 -37.68105 -37.11292 -34.14870 -33.59972 -32.37602 -30.81867 -29.58596 -27.90672 -26.41268 -24.57032 -23.63952 -22.79751 -22.38954 -21.17851 -19.63975 -18.20379 -17.80873 -17.34962 -17.12050 -16.71062 -16.26841 -15.61180 -15.32164 -15.12672 -14.99024 -14.83478 -14.53608 -14.40907 -13.96531 -13.83873 -13.25674 -12.97945 -12.62856 -12.37236 -12.14430 -11.95285 -11.60654 -11.53597 -11.32847 -11.13495 -11.01055 -10.90165 -10.51815 -10.06208 -9.99951 -9.99519 -9.89557 -9.24211 -8.82280 -8.74362 -8.52055 -8.40720 -8.07428 -6.12164 -4.21452 0.75189 1.16613 2.29079 2.68055 3.25756 3.29929 3.35370 3.44790 3.51548 4.08647 4.21237 4.35071 4.42929 4.58850 4.80075 4.86588 5.15703 5.19451 5.26433 5.41077 5.63756 5.67253 5.72451 5.78966 5.81913 5.84802 5.97118 6.10233 6.16355 6.22252 6.36695 6.42427 6.48235 6.55159 6.76640 6.81557 7.10541 7.16088 7.24126 7.52513 7.78338 7.88338 8.34985 8.81270 9.22447 9.46983 10.92067 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.004043 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.677056 B = 6924.198874 C = 7866.609306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.065 0.935 9 C 0.236 3.764 10 O -0.342 6.342 11 C 0.463 3.537 12 O -0.497 6.497 13 C -0.050 4.050 14 C -0.147 4.147 15 C 0.023 3.977 16 O -0.188 6.188 17 C 0.077 3.923 18 C -0.145 4.145 19 C 0.119 3.881 20 F -0.135 7.135 21 C -0.169 4.169 22 C -0.035 4.035 23 C -0.118 4.118 24 C -0.095 4.095 25 C -0.152 4.152 26 C -0.152 4.152 27 H 0.262 0.738 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.212 0.788 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 -8.617 -10.246 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.202 3.798 10 O -0.258 6.258 11 C 0.304 3.696 12 O -0.385 6.385 13 C -0.088 4.088 14 C -0.148 4.148 15 C -0.041 4.041 16 O -0.089 6.089 17 C 0.029 3.971 18 C -0.164 4.164 19 C 0.099 3.901 20 F -0.114 7.114 21 C -0.187 4.187 22 C -0.053 4.053 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.189 4.189 26 C -0.190 4.190 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.229 0.771 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.455 -8.324 -10.377 13.311 hybrid contribution 0.654 0.946 -0.035 1.151 sum 0.199 -7.378 -10.412 12.763 Atomic orbital electron populations 1.70010 1.05772 1.27063 1.47678 1.25046 0.94835 0.99149 0.93938 0.86699 0.79829 0.82827 0.79023 1.20123 1.21166 1.19896 1.21150 0.93773 0.89367 1.51167 0.91665 1.20616 0.86363 0.91836 0.81032 1.86346 1.45210 1.79492 1.14759 1.22601 0.87469 0.74365 0.85121 1.90588 1.16408 1.43909 1.87558 1.19640 0.96476 1.05463 0.87171 1.20518 1.03342 0.92130 0.98843 1.23819 0.93093 0.99766 0.87451 1.84015 1.55302 1.23500 1.46118 1.19018 0.98714 0.82741 0.96643 1.19536 1.03178 0.91080 1.02652 1.17054 0.93915 0.87562 0.91550 1.91506 1.72640 1.73057 1.74179 1.20693 1.00709 1.01490 0.95849 1.20124 0.96136 0.90921 0.98111 1.19796 1.00703 0.94789 0.96571 1.22728 1.00608 0.92859 0.97111 1.22983 0.98951 0.98130 0.98845 1.23459 0.97627 0.99254 0.98631 0.92775 0.87934 0.87149 0.77136 0.83978 0.84171 0.84511 0.91882 0.90045 0.92986 0.91335 0.90238 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.58 12.80 55.43 0.71 -22.87 16 2 C 0.08 2.02 5.36 -17.82 -0.10 1.93 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.06 6.82 -34.44 -0.23 -14.29 16 8 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 9 C 0.24 5.78 0.35 -90.87 -0.03 5.74 16 10 O -0.34 -8.17 9.91 -39.26 -0.39 -8.56 16 11 C 0.46 10.17 7.51 36.01 0.27 10.44 16 12 O -0.50 -12.39 14.43 -18.76 -0.27 -12.66 16 13 C -0.05 -0.80 6.36 -29.04 -0.18 -0.98 16 14 C -0.15 -2.32 4.85 -102.65 -0.50 -2.82 16 15 C 0.02 0.34 11.89 29.23 0.35 0.69 16 16 O -0.19 -2.85 10.58 3.83 0.04 -2.81 16 17 C 0.08 1.15 7.42 -38.48 -0.29 0.86 16 18 C -0.15 -1.88 10.04 -39.40 -0.40 -2.27 16 19 C 0.12 1.49 7.28 -39.39 -0.29 1.20 16 20 F -0.14 -1.65 17.25 2.25 0.04 -1.61 16 21 C -0.17 -2.01 9.96 -39.87 -0.40 -2.41 16 22 C -0.03 -0.46 10.05 -39.70 -0.40 -0.86 16 23 C -0.12 -1.81 6.38 -105.14 -0.67 -2.48 16 24 C -0.10 -2.13 7.01 -25.92 -0.18 -2.31 16 25 C -0.15 -2.89 8.03 -25.92 -0.21 -3.10 16 26 C -0.15 -3.29 7.09 -25.83 -0.18 -3.47 16 27 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.21 2.43 8.06 -52.49 -0.42 2.01 16 31 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 39 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -31.31 345.58 -7.73 -39.04 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.61 Total: 2.41 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.43 Total: -14.15 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.71 Total: -22.87 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.62 Total: -24.02 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.31 -7.73 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.685 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds