Wall clock time and date at job start Tue Mar 31 2020 11:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00430 * 2 1 4 4 H 1.48500 * 109.47217 * 240.00366 * 3 2 1 5 5 H 1.48506 * 109.46740 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47461 * 119.99670 * 3 2 1 7 7 C 1.37882 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99606 * 173.98071 * 7 2 1 9 9 C 1.50702 * 120.00077 * 353.98897 * 7 2 1 10 10 O 1.45201 * 112.90895 * 66.14413 * 9 7 2 11 11 C 1.34230 * 116.99900 * 54.04176 * 10 9 7 12 12 O 1.20834 * 119.99883 * 5.34288 * 11 10 9 13 13 C 1.50699 * 120.00270 * 185.34142 * 11 10 9 14 14 C 1.50694 * 109.47222 * 180.02562 * 13 11 10 15 15 C 1.33977 * 126.90984 * 265.02404 * 14 13 11 16 16 O 1.34473 * 110.15701 * 179.97438 * 15 14 13 17 17 C 1.34813 * 110.88883 * 0.02562 * 16 15 14 18 18 C 1.38932 * 133.46670 * 180.02562 * 17 16 15 19 19 C 1.38043 * 119.79848 * 179.97438 * 18 17 16 20 20 F 1.35108 * 119.68662 * 179.97438 * 19 18 17 21 21 C 1.38953 * 120.63212 * 359.97438 * 19 18 17 22 22 C 1.36717 * 120.38740 * 359.97438 * 21 19 18 23 23 C 1.39399 * 119.75455 * 359.77309 * 22 21 19 24 24 C 1.53779 * 113.61052 * 294.89822 * 9 7 2 25 25 C 1.53782 * 87.16989 * 220.05949 * 24 9 7 26 26 C 1.53778 * 87.08268 * 25.39145 * 25 24 9 27 27 H 0.96996 * 119.99805 * 5.03421 * 1 2 3 28 28 H 1.08995 * 109.46873 * 300.00578 * 13 11 10 29 29 H 1.09007 * 109.46796 * 60.00027 * 13 11 10 30 30 H 1.08002 * 124.91897 * 359.96282 * 15 14 13 31 31 H 1.08003 * 120.09482 * 359.93063 * 18 17 16 32 32 H 1.07994 * 119.80494 * 180.02562 * 21 19 18 33 33 H 1.08009 * 120.12129 * 180.02562 * 22 21 19 34 34 H 1.08999 * 113.61894 * 105.46946 * 24 9 7 35 35 H 1.09005 * 113.61461 * 334.64664 * 24 9 7 36 36 H 1.09005 * 113.61629 * 139.93903 * 25 24 9 37 37 H 1.08998 * 113.61617 * 270.75683 * 25 24 9 38 38 H 1.09002 * 113.61776 * 89.11449 * 26 25 24 39 39 H 1.09002 * 113.61353 * 219.93765 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0800 -1.1967 -0.0975 9 6 1.2572 -2.4956 0.1378 10 8 0.3988 -2.7771 -0.9990 11 6 0.9703 -2.7589 -2.2134 12 8 2.1652 -2.6118 -2.3166 13 6 0.1218 -2.9220 -3.4481 14 6 0.9995 -2.8660 -4.6718 15 6 1.2596 -1.7903 -5.4269 16 8 2.0854 -2.1208 -6.4354 17 6 2.4037 -3.4299 -6.3867 18 6 3.2017 -4.2495 -7.1752 19 6 3.3336 -5.5870 -6.8603 20 9 4.1098 -6.3820 -7.6289 21 6 2.6758 -6.1235 -5.7602 22 6 1.8872 -5.3321 -4.9722 23 6 1.7467 -3.9781 -5.2724 24 6 0.5553 -2.6625 1.4959 25 6 1.0004 -4.1341 1.4590 26 6 2.1508 -3.6814 0.5444 27 1 -0.4849 0.8368 -0.0737 28 1 -0.3905 -3.8834 -3.4124 29 1 -0.6145 -2.1194 -3.4915 30 1 0.8632 -0.8012 -5.2512 31 1 3.7166 -3.8414 -8.0324 32 1 2.7888 -7.1717 -5.5258 33 1 1.3781 -5.7536 -4.1179 34 1 -0.5257 -2.5320 1.4477 35 1 1.0158 -2.0871 2.2990 36 1 1.3340 -4.5137 2.4248 37 1 0.2851 -4.7945 0.9688 38 1 3.0486 -3.3841 1.0865 39 1 2.3587 -4.3741 -0.2711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:07 Heat of formation + Delta-G solvation = -90.964008 kcal Electronic energy + Delta-G solvation = -26485.977698 eV Core-core repulsion = 22468.101421 eV Total energy + Delta-G solvation = -4017.876277 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.01488 -43.56120 -41.08220 -38.84052 -38.69083 -35.87350 -34.89605 -34.40597 -31.84451 -30.71351 -29.17988 -28.31262 -26.32380 -24.71314 -24.52221 -23.43264 -22.67680 -20.94027 -19.98163 -18.99722 -18.84985 -18.45681 -17.70746 -17.54723 -17.02034 -16.89279 -16.68501 -16.46450 -16.29695 -16.02134 -15.64684 -15.39467 -15.07847 -14.82359 -13.99521 -13.97821 -13.82195 -13.63977 -13.36216 -13.21666 -13.01489 -12.97219 -12.81125 -12.61584 -12.33307 -12.07396 -11.90552 -11.76201 -11.63208 -11.19284 -10.88680 -10.79333 -10.40693 -10.26413 -9.78228 -9.16737 -8.15323 -6.30169 -0.28559 0.13496 1.12369 1.36322 1.37470 1.45109 1.61610 1.79928 2.34481 2.39617 2.59400 3.16773 3.20756 3.37830 3.50118 3.78196 3.88574 3.98094 4.00769 4.12445 4.16577 4.22355 4.35085 4.46869 4.57918 4.63099 4.73964 4.85387 4.88694 4.91217 5.06046 5.06505 5.11110 5.18806 5.30294 5.39246 5.53580 5.54942 5.68582 5.80636 5.99137 6.01330 6.52245 6.71039 7.36052 7.50660 8.87734 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.004043 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.677056 B = 6924.198874 C = 7866.609306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.040 0.960 9 C 0.213 3.787 10 O -0.351 6.351 11 C 0.455 3.545 12 O -0.534 6.534 13 C -0.036 4.036 14 C -0.170 4.170 15 C 0.024 3.976 16 O -0.195 6.195 17 C 0.054 3.946 18 C -0.147 4.147 19 C 0.116 3.884 20 F -0.132 7.132 21 C -0.159 4.159 22 C -0.047 4.047 23 C -0.137 4.137 24 C -0.096 4.096 25 C -0.124 4.124 26 C -0.151 4.151 27 H 0.265 0.735 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.235 0.765 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -9.650 -10.539 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.058 0.942 9 C 0.178 3.822 10 O -0.267 6.267 11 C 0.299 3.701 12 O -0.424 6.424 13 C -0.074 4.074 14 C -0.172 4.172 15 C -0.041 4.041 16 O -0.097 6.097 17 C 0.007 3.993 18 C -0.166 4.166 19 C 0.097 3.903 20 F -0.110 7.110 21 C -0.177 4.177 22 C -0.065 4.065 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.161 4.161 26 C -0.189 4.189 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.251 0.749 31 H 0.178 0.822 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.816 -9.366 -10.671 14.222 hybrid contribution 0.825 1.225 -0.010 1.477 sum 0.009 -8.141 -10.681 13.430 Atomic orbital electron populations 1.70066 1.06401 1.27686 1.48146 1.25557 0.95581 1.01392 0.93734 0.85938 0.78918 0.80198 0.78542 1.21099 1.19906 1.19457 1.21240 0.92828 0.91368 1.51811 0.94210 1.20816 0.87512 0.91804 0.82020 1.86321 1.45205 1.79642 1.15567 1.23683 0.87762 0.72867 0.85812 1.90563 1.18270 1.45602 1.87945 1.19647 0.95800 1.07614 0.84300 1.20604 1.04425 0.92976 0.99155 1.24332 0.92284 1.00524 0.86924 1.83999 1.55449 1.23849 1.46362 1.19321 0.99755 0.82820 0.97414 1.19780 1.02688 0.91214 1.02915 1.17156 0.93893 0.87499 0.91748 1.91518 1.72529 1.72874 1.74116 1.21003 0.99204 1.02702 0.94816 1.20364 0.96783 0.90383 0.98926 1.20071 1.01114 0.95694 0.96927 1.22675 0.99564 0.95377 0.95801 1.22845 0.97360 0.96160 0.99776 1.23406 0.98094 0.98262 0.99120 0.92583 0.85008 0.85635 0.74875 0.82185 0.81355 0.83173 0.92954 0.90851 0.89896 0.89888 0.90627 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.14 12.80 21.45 0.27 -47.86 16 2 C 0.04 2.19 5.36 84.66 0.45 2.64 16 3 Si 0.94 43.35 29.54 68.60 2.03 45.37 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -29.61 6.82 25.60 0.17 -29.44 16 8 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 9 C 0.21 10.47 0.35 -10.95 0.00 10.47 16 10 O -0.35 -16.72 9.91 -51.42 -0.51 -17.23 16 11 C 0.46 19.93 7.51 71.24 0.53 20.46 16 12 O -0.53 -27.04 14.43 21.94 0.32 -26.73 16 13 C -0.04 -1.13 6.36 29.10 0.19 -0.94 16 14 C -0.17 -5.27 4.85 -18.59 -0.09 -5.36 16 15 C 0.02 0.68 11.89 66.85 0.79 1.47 16 16 O -0.20 -5.85 10.58 -9.20 -0.10 -5.95 16 17 C 0.05 1.60 7.42 22.99 0.17 1.77 16 18 C -0.15 -3.64 10.04 22.39 0.22 -3.42 16 19 C 0.12 2.72 7.28 22.39 0.16 2.88 16 20 F -0.13 -2.95 17.25 44.97 0.78 -2.17 16 21 C -0.16 -3.46 9.96 22.08 0.22 -3.24 16 22 C -0.05 -1.18 10.05 22.19 0.22 -0.95 16 23 C -0.14 -4.12 6.38 -20.20 -0.13 -4.25 16 24 C -0.10 -4.25 7.01 31.12 0.22 -4.03 16 25 C -0.12 -4.47 8.03 31.12 0.25 -4.22 16 26 C -0.15 -6.47 7.09 31.18 0.22 -6.24 16 27 H 0.26 13.70 8.32 -92.71 -0.77 12.92 16 28 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.13 3.51 8.14 -2.38 -0.02 3.49 16 30 H 0.24 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 3.28 8.09 -2.38 -0.02 3.26 16 36 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 38 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 39 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 Total: -1.00 -67.84 345.58 7.48 -60.37 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.08 Total: 16.60 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.61 Total: -22.40 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.27 Total: -47.86 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.29 Total: -49.90 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.84 7.48 -60.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.597 kcal (2) G-P(sol) polarization free energy of solvation -67.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds