Wall clock time and date at job start Tue Mar 31 2020 12:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.46217 * 126.95830 * 2 1 4 4 C 1.39778 * 134.16509 * 359.95923 * 3 2 1 5 5 C 1.36591 * 119.75711 * 180.32205 * 4 3 2 6 6 C 1.38847 * 120.46427 * 0.02562 * 5 4 3 7 7 C 1.37973 * 120.72245 * 0.02562 * 6 5 4 8 8 F 1.35094 * 120.09384 * 180.02562 * 7 6 5 9 9 C 1.39245 * 119.81225 * 359.96983 * 7 6 5 10 10 O 1.34740 * 133.22900 * 180.02562 * 9 7 6 11 11 C 1.34953 * 110.84995 * 180.02562 * 10 9 7 12 12 C 1.46819 * 125.14825 * 179.97438 * 11 10 9 13 13 O 1.21576 * 120.00119 * 180.02562 * 12 11 10 14 14 O 1.34851 * 120.00117 * 0.03168 * 12 11 10 15 15 C 1.45196 * 117.00485 * 182.98181 * 14 12 11 16 16 C 1.50702 * 112.85015 * 294.88642 * 15 14 12 17 17 H 1.08001 * 119.99494 * 118.51807 * 16 15 14 18 18 C 1.37872 * 120.00057 * 298.51962 * 16 15 14 19 19 N 1.31515 * 119.99993 * 1.77547 * 18 16 15 20 20 Si 1.86794 * 120.00209 * 181.77435 * 18 16 15 21 21 H 1.48499 * 109.47477 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47235 * 299.99739 * 20 18 16 23 23 H 1.48501 * 109.47165 * 59.99954 * 20 18 16 24 24 C 1.53784 * 113.61079 * 66.08032 * 15 14 12 25 25 C 1.53951 * 87.02211 * 89.23316 * 24 15 14 26 26 C 1.53784 * 113.61654 * 163.68644 * 15 14 12 27 27 H 1.08999 * 109.47280 * 270.19193 * 1 2 3 28 28 H 1.09000 * 109.47414 * 30.19086 * 1 2 3 29 29 H 1.09001 * 109.47265 * 150.19358 * 1 2 3 30 30 H 1.08000 * 120.11930 * 0.35218 * 4 3 2 31 31 H 1.07995 * 119.76720 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.63770 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00132 * 355.06113 * 19 18 16 34 34 H 1.09010 * 113.61257 * 203.75051 * 24 15 14 35 35 H 1.09001 * 113.61375 * 334.65042 * 24 15 14 36 36 H 1.08999 * 113.53890 * 270.81218 * 25 24 15 37 37 H 1.08993 * 113.74674 * 139.94106 * 25 24 15 38 38 H 1.08997 * 113.61466 * 25.35501 * 26 15 14 39 39 H 1.09002 * 113.61308 * 156.17334 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3860 1.1684 0.0000 4 6 2.1704 2.5494 -0.0007 5 6 3.2373 3.4022 -0.0071 6 6 4.5344 2.9068 -0.0135 7 6 4.7697 1.5473 -0.0140 8 9 6.0370 1.0792 -0.0197 9 6 3.6974 0.6591 -0.0074 10 8 3.6128 -0.6856 -0.0057 11 6 2.3241 -1.0859 0.0010 12 6 1.8729 -2.4830 0.0041 13 8 0.6842 -2.7380 0.0097 14 8 2.7771 -3.4835 0.0008 15 6 2.2603 -4.8389 -0.0632 16 6 1.4633 -5.2196 1.1578 17 1 0.4203 -5.4829 1.0613 18 6 2.0656 -5.2317 2.3980 19 7 3.3262 -4.8775 2.5203 20 14 1.0911 -5.7513 3.9045 21 1 1.9605 -5.6778 5.1061 22 1 -0.0715 -4.8440 4.0793 23 1 0.6092 -7.1446 3.7261 24 6 1.5515 -5.1660 -1.3882 25 6 2.9258 -5.6103 -1.9210 26 6 3.3175 -5.8833 -0.4591 27 1 -0.3634 0.0034 1.0276 28 1 -0.3634 0.8882 -0.5168 29 1 -0.3634 -0.8917 -0.5108 30 1 1.1638 2.9407 0.0043 31 1 3.0709 4.4692 -0.0081 32 1 5.3682 3.5932 -0.0190 33 1 3.8524 -4.6768 1.7305 34 1 0.8303 -5.9795 -1.3084 35 1 1.1480 -4.2896 -1.8954 36 1 3.4955 -4.8035 -2.3822 37 1 2.8881 -6.5081 -2.5378 38 1 4.3376 -5.5852 -0.2173 39 1 3.0808 -6.8930 -0.1236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810860022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:33 Heat of formation + Delta-G solvation = -78.966424 kcal Electronic energy + Delta-G solvation = -26862.322277 eV Core-core repulsion = 22844.966254 eV Total energy + Delta-G solvation = -4017.356023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.96945 -42.49505 -39.63917 -37.96632 -37.28225 -34.59875 -33.62654 -32.46512 -30.41134 -30.08059 -27.72628 -26.12034 -24.88380 -24.45568 -23.06433 -22.62515 -21.17350 -20.05120 -18.80416 -18.10256 -17.50476 -17.23681 -16.69091 -16.63737 -15.80289 -15.44151 -15.35537 -15.15156 -14.72295 -14.00074 -13.93800 -13.77899 -13.45886 -13.19671 -13.03814 -12.76141 -12.44989 -12.35532 -12.18907 -12.15346 -12.00299 -11.49174 -11.45243 -10.90040 -10.64826 -10.49986 -10.27659 -10.20630 -10.07353 -9.85407 -9.75826 -9.14797 -8.85604 -8.53949 -8.27166 -8.14536 -6.44519 -4.24982 0.41474 1.03727 1.74999 2.41622 3.34050 3.34918 3.40709 3.46266 3.54867 3.61075 3.93772 4.45474 4.46182 4.49858 4.66557 4.92222 4.93744 5.21097 5.24770 5.32593 5.46096 5.49935 5.62069 5.72476 5.75887 5.79718 5.88411 5.93505 6.01809 6.15283 6.17804 6.27894 6.38371 6.41032 6.59469 6.63254 6.79699 6.96566 7.03018 7.23433 7.44692 7.98302 8.31226 8.68463 8.78325 9.52046 10.92936 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.004275 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.121906 B = 6548.626246 C = 6744.365951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.099 4.099 3 C -0.109 4.109 4 C -0.069 4.069 5 C -0.116 4.116 6 C -0.125 4.125 7 C 0.114 3.886 8 F -0.130 7.130 9 C 0.032 3.968 10 O -0.157 6.157 11 C 0.018 3.982 12 C 0.545 3.455 13 O -0.465 6.465 14 O -0.339 6.339 15 C 0.207 3.793 16 C -0.596 4.596 17 H 0.062 0.938 18 C 0.031 3.969 19 N -0.886 5.886 20 Si 1.065 2.935 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.284 1.284 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.109 4.109 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.280 0.720 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 14.412 -6.548 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.088 4.088 5 C -0.134 4.134 6 C -0.144 4.144 7 C 0.094 3.906 8 F -0.108 7.108 9 C -0.018 4.018 10 O -0.058 6.058 11 C -0.031 4.031 12 C 0.387 3.613 13 O -0.354 6.354 14 O -0.255 6.255 15 C 0.174 3.826 16 C -0.633 4.633 17 H 0.080 0.920 18 C -0.178 4.178 19 N -0.521 5.521 20 Si 0.893 3.107 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.211 1.211 24 C -0.181 4.181 25 C -0.187 4.187 26 C -0.146 4.146 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.859 13.888 -4.914 14.757 hybrid contribution 0.189 0.134 -1.573 1.590 sum -0.670 14.022 -6.487 15.464 Atomic orbital electron populations 1.20432 0.86952 1.03825 1.03412 1.21328 0.97215 0.88736 1.02834 1.19641 0.91079 0.94435 1.05829 1.20382 1.00151 0.89901 0.98330 1.20573 0.90909 1.00321 1.01580 1.20949 0.99210 0.91555 1.02697 1.16533 0.76510 0.90218 1.07345 1.91539 1.36184 1.89074 1.94031 1.19750 0.95075 0.82409 1.04574 1.84258 1.27407 1.19201 1.74887 1.21531 0.80705 0.93637 1.07198 1.18948 0.84845 0.82791 0.74747 1.90831 1.16568 1.82938 1.45024 1.86602 1.40022 1.17644 1.81202 1.21059 0.92151 0.75214 0.94186 1.22034 0.98355 1.50357 0.92558 0.91970 1.25912 0.97141 0.93448 1.01253 1.70698 1.07861 1.39031 1.34481 0.83606 0.75119 0.76518 0.75488 1.20645 1.21255 1.21055 1.23371 0.96090 1.00778 0.97895 1.22999 0.98206 1.00276 0.97202 1.22963 0.98916 0.99148 0.93617 0.90251 0.91349 0.88818 0.84557 0.84175 0.83430 0.90762 0.89659 0.92819 0.91193 0.92385 0.92173 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.81 36.00 0.35 -0.93 16 2 C -0.10 -1.70 6.39 -102.26 -0.65 -2.35 16 3 C -0.11 -1.64 6.37 -105.20 -0.67 -2.31 16 4 C -0.07 -0.75 10.06 -39.60 -0.40 -1.15 16 5 C -0.12 -1.04 9.98 -39.95 -0.40 -1.44 16 6 C -0.13 -1.30 9.99 -39.45 -0.39 -1.69 16 7 C 0.11 1.65 7.32 -39.30 -0.29 1.36 16 8 F -0.13 -2.02 17.27 2.25 0.04 -1.98 16 9 C 0.03 0.55 7.39 -38.29 -0.28 0.26 16 10 O -0.16 -3.27 10.60 1.91 0.02 -3.25 16 11 C 0.02 0.38 7.11 -36.95 -0.26 0.11 16 12 C 0.55 13.03 7.32 34.20 0.25 13.28 16 13 O -0.47 -11.36 12.78 -19.32 -0.25 -11.60 16 14 O -0.34 -8.72 9.11 -42.74 -0.39 -9.11 16 15 C 0.21 5.20 0.11 -90.96 -0.01 5.19 16 16 C -0.60 -16.52 7.35 -34.44 -0.25 -16.77 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.03 0.88 5.40 -17.82 -0.10 0.78 16 19 N -0.89 -26.40 13.51 55.43 0.75 -25.66 16 20 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.14 -3.11 6.91 -25.83 -0.18 -3.29 16 25 C -0.15 -2.88 8.03 -25.83 -0.21 -3.09 16 26 C -0.11 -2.44 6.67 -25.91 -0.17 -2.61 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.49 6.38 -51.93 -0.33 1.16 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.28 8.40 5.76 -40.82 -0.24 8.16 16 34 H 0.08 1.79 8.09 -51.92 -0.42 1.37 16 35 H 0.05 1.15 7.32 -51.93 -0.38 0.77 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.37 7.77 -51.93 -0.40 0.97 16 39 H 0.09 2.02 8.09 -51.93 -0.42 1.60 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -32.20 338.66 -7.83 -40.02 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.36 Total: 1.11 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.66 Total: -14.66 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.75 Total: -25.66 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.62 Total: -23.96 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.20 -7.83 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.945 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds