Wall clock time and date at job start Tue Mar 31 2020 12:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.46217 * 126.95830 * 2 1 4 4 C 1.39778 * 134.16509 * 359.95923 * 3 2 1 5 5 C 1.36591 * 119.75711 * 180.32205 * 4 3 2 6 6 C 1.38847 * 120.46427 * 0.02562 * 5 4 3 7 7 C 1.37973 * 120.72245 * 0.02562 * 6 5 4 8 8 F 1.35094 * 120.09384 * 180.02562 * 7 6 5 9 9 C 1.39245 * 119.81225 * 359.96983 * 7 6 5 10 10 O 1.34740 * 133.22900 * 180.02562 * 9 7 6 11 11 C 1.34953 * 110.84995 * 180.02562 * 10 9 7 12 12 C 1.46819 * 125.14825 * 179.97438 * 11 10 9 13 13 O 1.21576 * 120.00119 * 180.02562 * 12 11 10 14 14 O 1.34851 * 120.00117 * 0.03168 * 12 11 10 15 15 C 1.45196 * 117.00485 * 182.98181 * 14 12 11 16 16 C 1.50702 * 112.85015 * 294.88642 * 15 14 12 17 17 H 1.08001 * 119.99494 * 118.51807 * 16 15 14 18 18 C 1.37872 * 120.00057 * 298.51962 * 16 15 14 19 19 N 1.31515 * 119.99993 * 1.77547 * 18 16 15 20 20 Si 1.86794 * 120.00209 * 181.77435 * 18 16 15 21 21 H 1.48499 * 109.47477 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47235 * 299.99739 * 20 18 16 23 23 H 1.48501 * 109.47165 * 59.99954 * 20 18 16 24 24 C 1.53784 * 113.61079 * 66.08032 * 15 14 12 25 25 C 1.53951 * 87.02211 * 89.23316 * 24 15 14 26 26 C 1.53784 * 113.61654 * 163.68644 * 15 14 12 27 27 H 1.08999 * 109.47280 * 270.19193 * 1 2 3 28 28 H 1.09000 * 109.47414 * 30.19086 * 1 2 3 29 29 H 1.09001 * 109.47265 * 150.19358 * 1 2 3 30 30 H 1.08000 * 120.11930 * 0.35218 * 4 3 2 31 31 H 1.07995 * 119.76720 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.63770 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00132 * 355.06113 * 19 18 16 34 34 H 1.09010 * 113.61257 * 203.75051 * 24 15 14 35 35 H 1.09001 * 113.61375 * 334.65042 * 24 15 14 36 36 H 1.08999 * 113.53890 * 270.81218 * 25 24 15 37 37 H 1.08993 * 113.74674 * 139.94106 * 25 24 15 38 38 H 1.08997 * 113.61466 * 25.35501 * 26 15 14 39 39 H 1.09002 * 113.61308 * 156.17334 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3860 1.1684 0.0000 4 6 2.1704 2.5494 -0.0007 5 6 3.2373 3.4022 -0.0071 6 6 4.5344 2.9068 -0.0135 7 6 4.7697 1.5473 -0.0140 8 9 6.0370 1.0792 -0.0197 9 6 3.6974 0.6591 -0.0074 10 8 3.6128 -0.6856 -0.0057 11 6 2.3241 -1.0859 0.0010 12 6 1.8729 -2.4830 0.0041 13 8 0.6842 -2.7380 0.0097 14 8 2.7771 -3.4835 0.0008 15 6 2.2603 -4.8389 -0.0632 16 6 1.4633 -5.2196 1.1578 17 1 0.4203 -5.4829 1.0613 18 6 2.0656 -5.2317 2.3980 19 7 3.3262 -4.8775 2.5203 20 14 1.0911 -5.7513 3.9045 21 1 1.9605 -5.6778 5.1061 22 1 -0.0715 -4.8440 4.0793 23 1 0.6092 -7.1446 3.7261 24 6 1.5515 -5.1660 -1.3882 25 6 2.9258 -5.6103 -1.9210 26 6 3.3175 -5.8833 -0.4591 27 1 -0.3634 0.0034 1.0276 28 1 -0.3634 0.8882 -0.5168 29 1 -0.3634 -0.8917 -0.5108 30 1 1.1638 2.9407 0.0043 31 1 3.0709 4.4692 -0.0081 32 1 5.3682 3.5932 -0.0190 33 1 3.8524 -4.6768 1.7305 34 1 0.8303 -5.9795 -1.3084 35 1 1.1480 -4.2896 -1.8954 36 1 3.4955 -4.8035 -2.3822 37 1 2.8881 -6.5081 -2.5378 38 1 4.3376 -5.5852 -0.2173 39 1 3.0808 -6.8930 -0.1236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810860022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:33 Heat of formation + Delta-G solvation = -96.794161 kcal Electronic energy + Delta-G solvation = -26863.095345 eV Core-core repulsion = 22844.966254 eV Total energy + Delta-G solvation = -4018.129092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.07533 -43.76933 -41.46359 -39.18985 -38.85943 -36.39114 -34.96738 -34.58391 -31.47539 -31.12298 -29.06144 -28.07112 -26.64372 -25.91269 -24.40473 -24.11152 -22.59813 -21.35825 -20.51162 -19.86866 -18.98489 -18.66826 -17.99287 -17.92269 -17.32699 -16.83480 -16.76726 -16.32975 -16.17648 -15.76156 -15.68561 -15.43477 -14.86128 -14.51016 -14.25624 -14.20460 -14.05198 -13.97202 -13.35378 -13.28979 -13.14740 -12.90524 -12.78167 -12.52491 -12.49940 -12.36725 -12.13753 -11.96732 -11.90875 -11.52734 -11.02944 -10.98215 -10.64655 -10.23521 -9.95017 -9.31546 -8.66598 -6.47187 -0.77400 0.02412 0.47983 1.10682 1.46753 1.53411 1.74138 1.78625 1.91393 2.41229 2.50046 2.87381 3.08453 3.22901 3.49103 3.59350 3.69796 3.74676 3.87482 4.00181 4.08529 4.12422 4.25401 4.33091 4.43885 4.66465 4.67098 4.77530 4.81069 4.83365 4.91852 4.92787 4.98208 5.07075 5.23062 5.23979 5.30236 5.34016 5.49078 5.57450 5.82652 5.97670 6.09777 6.50375 6.86685 7.37750 8.69942 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.004275 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.121906 B = 6548.626246 C = 6744.365951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.064 4.064 3 C -0.127 4.127 4 C -0.054 4.054 5 C -0.097 4.097 6 C -0.091 4.091 7 C 0.072 3.928 8 F -0.147 7.147 9 C 0.001 3.999 10 O -0.198 6.198 11 C -0.047 4.047 12 C 0.537 3.463 13 O -0.487 6.487 14 O -0.358 6.358 15 C 0.180 3.820 16 C -0.605 4.605 17 H 0.049 0.951 18 C -0.015 4.015 19 N -0.916 5.916 20 Si 1.107 2.893 21 H -0.282 1.282 22 H -0.280 1.280 23 H -0.259 1.259 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.110 4.110 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.178 0.822 31 H 0.197 0.803 32 H 0.187 0.813 33 H 0.267 0.733 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 18.195 -7.128 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.128 4.128 4 C -0.071 4.071 5 C -0.115 4.115 6 C -0.109 4.109 7 C 0.052 3.948 8 F -0.126 7.126 9 C -0.048 4.048 10 O -0.101 6.101 11 C -0.095 4.095 12 C 0.381 3.619 13 O -0.377 6.377 14 O -0.275 6.275 15 C 0.146 3.854 16 C -0.642 4.642 17 H 0.068 0.932 18 C -0.217 4.217 19 N -0.552 5.552 20 Si 0.929 3.071 21 H -0.208 1.208 22 H -0.206 1.206 23 H -0.184 1.184 24 C -0.176 4.176 25 C -0.160 4.160 26 C -0.148 4.148 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.090 0.910 30 H 0.195 0.805 31 H 0.214 0.786 32 H 0.204 0.796 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.091 17.675 -5.519 18.634 hybrid contribution 0.571 -0.711 -1.444 1.708 sum -1.520 16.964 -6.963 18.400 Atomic orbital electron populations 1.20578 0.84936 1.05039 1.04114 1.21861 0.98380 0.88542 0.97853 1.19866 0.89238 0.95869 1.07805 1.20975 1.03006 0.87569 0.95578 1.21260 0.89211 1.02698 0.98296 1.21604 1.01584 0.89761 0.97994 1.17132 0.75523 0.91576 1.10564 1.91487 1.37011 1.89540 1.94528 1.20464 0.97398 0.81312 1.05608 1.84138 1.27564 1.21675 1.76698 1.21119 0.81959 0.92765 1.13649 1.19414 0.84625 0.83848 0.73981 1.90774 1.16838 1.83751 1.46355 1.86560 1.40818 1.18263 1.81852 1.21340 0.93724 0.75474 0.94835 1.22253 0.97901 1.50045 0.93970 0.93231 1.27218 0.97257 0.92925 1.04334 1.70807 1.08869 1.41738 1.33757 0.83088 0.74046 0.77606 0.72399 1.20759 1.20615 1.18397 1.23315 0.97320 1.00757 0.96187 1.22859 0.95820 1.01776 0.95593 1.22942 0.97466 0.98290 0.96109 0.89513 0.86677 0.90953 0.80498 0.78639 0.79586 0.92245 0.89097 0.93239 0.90817 0.88611 0.93570 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 9.81 71.23 0.70 -1.78 16 2 C -0.06 -2.22 6.39 -18.34 -0.12 -2.33 16 3 C -0.13 -3.64 6.37 -20.24 -0.13 -3.77 16 4 C -0.05 -0.88 10.06 22.26 0.22 -0.65 16 5 C -0.10 -1.11 9.98 22.03 0.22 -0.89 16 6 C -0.09 -1.49 9.99 22.35 0.22 -1.26 16 7 C 0.07 2.03 7.32 22.45 0.16 2.20 16 8 F -0.15 -4.73 17.27 44.97 0.78 -3.95 16 9 C 0.00 0.03 7.39 23.11 0.17 0.20 16 10 O -0.20 -8.96 10.60 -12.56 -0.13 -9.10 16 11 C -0.05 -2.12 7.11 23.97 0.17 -1.95 16 12 C 0.54 27.64 7.32 70.07 0.51 28.16 16 13 O -0.49 -25.31 12.78 19.59 0.25 -25.05 16 14 O -0.36 -19.88 9.11 -55.89 -0.51 -20.39 16 15 C 0.18 9.50 0.11 -11.01 0.00 9.49 16 16 C -0.60 -35.04 7.35 25.60 0.19 -34.85 16 17 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 18 C -0.02 -0.89 5.40 84.65 0.46 -0.43 16 19 N -0.92 -57.44 13.51 21.45 0.29 -57.15 16 20 Si 1.11 51.87 29.90 68.60 2.05 53.93 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 C -0.14 -6.15 6.91 31.18 0.22 -5.93 16 25 C -0.12 -4.76 8.03 31.18 0.25 -4.51 16 26 C -0.11 -5.16 6.67 31.12 0.21 -4.95 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.33 6.38 -2.39 -0.02 2.32 16 30 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.20 0.29 8.06 -2.91 -0.02 0.26 16 32 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.27 17.10 5.76 -92.71 -0.53 16.56 16 34 H 0.09 3.87 8.09 -2.38 -0.02 3.85 16 35 H 0.05 2.21 7.32 -2.39 -0.02 2.19 16 36 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.05 2.24 7.77 -2.39 -0.02 2.22 16 39 H 0.09 4.16 8.09 -2.39 -0.02 4.14 16 Total: -1.00 -79.72 338.66 7.51 -72.21 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.33 Total: 12.76 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 3.46 Total: -23.26 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.29 Total: -57.15 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.39 Total: -54.54 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.78 Total: -3.95 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.93 kcal Total: -79.72 7.51 -72.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.581 kcal (2) G-P(sol) polarization free energy of solvation -79.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds